FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE2559, 147 aa 1>>>pF1KE2559 147 - 147 aa - 147 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.1682+/-0.000602; mu= 12.4176+/- 0.036 mean_var=60.2680+/-11.976, 0's: 0 Z-trim(111.5): 13 B-trim: 74 in 1/49 Lambda= 0.165208 statistics sampled from 12380 (12390) to 12380 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.765), E-opt: 0.2 (0.381), width: 16 Scan time: 1.830 The best scores are: opt bits E(32554) CCDS31074.1 MAP1LC3C gene_id:440738|Hs108|chr1 ( 147) 969 238.5 1.1e-63 CCDS13238.1 MAP1LC3A gene_id:84557|Hs108|chr20 ( 121) 466 118.5 1.2e-27 CCDS10960.1 MAP1LC3B gene_id:81631|Hs108|chr16 ( 125) 443 113.1 5.5e-26 CCDS41841.1 MAP1LC3B2 gene_id:643246|Hs108|chr12 ( 125) 432 110.4 3.4e-25 CCDS13237.1 MAP1LC3A gene_id:84557|Hs108|chr20 ( 125) 399 102.6 7.9e-23 CCDS8620.1 GABARAPL1 gene_id:23710|Hs108|chr12 ( 117) 309 81.1 2.1e-16 CCDS10921.1 GABARAPL2 gene_id:11345|Hs108|chr16 ( 117) 306 80.4 3.5e-16 CCDS11092.1 GABARAP gene_id:11337|Hs108|chr17 ( 117) 296 78.0 1.8e-15 >>CCDS31074.1 MAP1LC3C gene_id:440738|Hs108|chr1 (147 aa) initn: 969 init1: 969 opt: 969 Z-score: 1256.5 bits: 238.5 E(32554): 1.1e-63 Smith-Waterman score: 969; 100.0% identity (100.0% similar) in 147 aa overlap (1-147:1-147) 10 20 30 40 50 60 pF1KE2 MPPPQKIPSVRPFKQRKSLAIRQEEVAGIRAKFPNKIPVVVERYPRETFLPPLDKTKFLV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 MPPPQKIPSVRPFKQRKSLAIRQEEVAGIRAKFPNKIPVVVERYPRETFLPPLDKTKFLV 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 PQELTMTQFLSIIRSRMVLRATEAFYLLVNNKSLVSMSATMAEIYRDYKDEDGFVYMTYA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 PQELTMTQFLSIIRSRMVLRATEAFYLLVNNKSLVSMSATMAEIYRDYKDEDGFVYMTYA 70 80 90 100 110 120 130 140 pF1KE2 SQETFGCLESAAPRDGSSLEDRPCNPL ::::::::::::::::::::::::::: CCDS31 SQETFGCLESAAPRDGSSLEDRPCNPL 130 140 >>CCDS13238.1 MAP1LC3A gene_id:84557|Hs108|chr20 (121 aa) initn: 466 init1: 466 opt: 466 Z-score: 609.9 bits: 118.5 E(32554): 1.2e-27 Smith-Waterman score: 466; 59.2% identity (85.0% similar) in 120 aa overlap (7-126:1-120) 10 20 30 40 50 60 pF1KE2 MPPPQKIPSVRPFKQRKSLAIRQEEVAGIRAKFPNKIPVVVERYPRETFLPPLDKTKFLV .:: ::::::.:.: : .:: :: . :.::::..::: : :: :::::::: CCDS13 MPSDRPFKQRRSFADRCKEVQQIRDQHPSKIPVIIERYKGEKQLPVLDKTKFLV 10 20 30 40 50 70 80 90 100 110 120 pF1KE2 PQELTMTQFLSIIRSRMVLRATEAFYLLVNNKSLVSMSATMAEIYRDYKDEDGFVYMTYA :....:.....::: :. : :.::.::::..:.::.:. .:.::.. ::::::.::.:: CCDS13 PDHVNMSELVKIIRRRLQLNPTQAFFLLVNQHSMVSVSTPIADIYEQEKDEDGFLYMVYA 60 70 80 90 100 110 130 140 pF1KE2 SQETFGCLESAAPRDGSSLEDRPCNPL :::::: CCDS13 SQETFGF 120 >>CCDS10960.1 MAP1LC3B gene_id:81631|Hs108|chr16 (125 aa) initn: 443 init1: 443 opt: 443 Z-score: 580.0 bits: 113.1 E(32554): 5.5e-26 Smith-Waterman score: 443; 55.0% identity (84.2% similar) in 120 aa overlap (7-126:1-120) 10 20 30 40 50 60 pF1KE2 MPPPQKIPSVRPFKQRKSLAIRQEEVAGIRAKFPNKIPVVVERYPRETFLPPLDKTKFLV .:: . ::::... : :.: :: . :.::::..::: : :: :::::::: CCDS10 MPSEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLV 10 20 30 40 50 70 80 90 100 110 120 pF1KE2 PQELTMTQFLSIIRSRMVLRATEAFYLLVNNKSLVSMSATMAEIYRDYKDEDGFVYMTYA :....:.....::: :. : :..::.::::..:.::.:. ..:.:.. ::::::.::.:: CCDS10 PDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVYA 60 70 80 90 100 110 130 140 pF1KE2 SQETFGCLESAAPRDGSSLEDRPCNPL :::::: CCDS10 SQETFGMKLSV 120 >>CCDS41841.1 MAP1LC3B2 gene_id:643246|Hs108|chr12 (125 aa) initn: 432 init1: 432 opt: 432 Z-score: 565.9 bits: 110.4 E(32554): 3.4e-25 Smith-Waterman score: 432; 54.2% identity (83.3% similar) in 120 aa overlap (7-126:1-120) 10 20 30 40 50 60 pF1KE2 MPPPQKIPSVRPFKQRKSLAIRQEEVAGIRAKFPNKIPVVVERYPRETFLPPLDKTKFLV .:: . ::::... : :.: :: . :.::::..::: : :: :::::::: CCDS41 MPSEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLV 10 20 30 40 50 70 80 90 100 110 120 pF1KE2 PQELTMTQFLSIIRSRMVLRATEAFYLLVNNKSLVSMSATMAEIYRDYKDEDGFVYMTYA :....:.....::: :. : :..::.::::..:.::.:. ..:.:.. ::::::.::. : CCDS41 PDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVCA 60 70 80 90 100 110 130 140 pF1KE2 SQETFGCLESAAPRDGSSLEDRPCNPL :::::: CCDS41 SQETFGMKLSV 120 >>CCDS13237.1 MAP1LC3A gene_id:84557|Hs108|chr20 (125 aa) initn: 399 init1: 399 opt: 399 Z-score: 523.4 bits: 102.6 E(32554): 7.9e-23 Smith-Waterman score: 399; 57.9% identity (84.1% similar) in 107 aa overlap (20-126:18-124) 10 20 30 40 50 60 pF1KE2 MPPPQKIPSVRPFKQRKSLAIRQEEVAGIRAKFPNKIPVVVERYPRETFLPPLDKTKFLV : : .:: :: . :.::::..::: : :: :::::::: CCDS13 MKMRFFSSPCGKAAVDPADRCKEVQQIRDQHPSKIPVIIERYKGEKQLPVLDKTKFLV 10 20 30 40 50 70 80 90 100 110 120 pF1KE2 PQELTMTQFLSIIRSRMVLRATEAFYLLVNNKSLVSMSATMAEIYRDYKDEDGFVYMTYA :....:.....::: :. : :.::.::::..:.::.:. .:.::.. ::::::.::.:: CCDS13 PDHVNMSELVKIIRRRLQLNPTQAFFLLVNQHSMVSVSTPIADIYEQEKDEDGFLYMVYA 60 70 80 90 100 110 130 140 pF1KE2 SQETFGCLESAAPRDGSSLEDRPCNPL :::::: CCDS13 SQETFGF 120 >>CCDS8620.1 GABARAPL1 gene_id:23710|Hs108|chr12 (117 aa) initn: 308 init1: 142 opt: 309 Z-score: 407.9 bits: 81.1 E(32554): 2.1e-16 Smith-Waterman score: 309; 39.5% identity (76.3% similar) in 114 aa overlap (13-126:5-116) 10 20 30 40 50 60 pF1KE2 MPPPQKIPSVRPFKQRKSLAIRQEEVAGIRAKFPNKIPVVVERYPRETFLPPLDKTKFLV .:. . . :..: :: :.:...::.::. :. .: ::: :.:: CCDS86 MKFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKAR-VPDLDKRKYLV 10 20 30 40 50 70 80 90 100 110 120 pF1KE2 PQELTMTQFLSIIRSRMVLRATEAFYLLVNNKSLVSMSATMAEIYRDYKDEDGFVYMTYA :..::. :: .::.:. :: .:....::: .. ::::...:.: ..:: :.:..:. CCDS86 PSDLTVGQFYFLIRKRIHLRPEDALFFFVNN-TIPPTSATMGQLYEDNHEEDYFLYVAYS 60 70 80 90 100 110 130 140 pF1KE2 SQETFGCLESAAPRDGSSLEDRPCNPL .. ..: CCDS86 DESVYGK >>CCDS10921.1 GABARAPL2 gene_id:11345|Hs108|chr16 (117 aa) initn: 303 init1: 115 opt: 306 Z-score: 404.0 bits: 80.4 E(32554): 3.5e-16 Smith-Waterman score: 306; 43.0% identity (78.1% similar) in 114 aa overlap (13-126:5-116) 10 20 30 40 50 60 pF1KE2 MPPPQKIPSVRPFKQRKSLAIRQEEVAGIRAKFPNKIPVVVERYPRETFLPPLDKTKFLV ::. .:: : : : ::::.:...::.::. .. .:: :.:: CCDS10 MKWMFKEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSGSQIVD-IDKRKYLV 10 20 30 40 50 70 80 90 100 110 120 pF1KE2 PQELTMTQFLSIIRSRMVLRATEAFYLLVNNKSLVSMSATMAEIYRDYKDEDGFVYMTYA :...:..::. :::.:. : . .:..:.:. :.. . : ::...:. ::::::.:..:. CCDS10 PSDITVAQFMWIIRKRIQLPSEKAIFLFVD-KTVPQSSLTMGQLYEKEKDEDGFLYVAYS 60 70 80 90 100 110 130 140 pF1KE2 SQETFGCLESAAPRDGSSLEDRPCNPL ...::: CCDS10 GENTFGF >>CCDS11092.1 GABARAP gene_id:11337|Hs108|chr17 (117 aa) initn: 308 init1: 138 opt: 296 Z-score: 391.1 bits: 78.0 E(32554): 1.8e-15 Smith-Waterman score: 296; 38.6% identity (76.3% similar) in 114 aa overlap (13-126:5-116) 10 20 30 40 50 60 pF1KE2 MPPPQKIPSVRPFKQRKSLAIRQEEVAGIRAKFPNKIPVVVERYPRETFLPPLDKTKFLV .:... . :. : :: :.:...::.::. :. . ::: :.:: CCDS11 MKFVYKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAPKAR-IGDLDKKKYLV 10 20 30 40 50 70 80 90 100 110 120 pF1KE2 PQELTMTQFLSIIRSRMVLRATEAFYLLVNNKSLVSMSATMAEIYRDYKDEDGFVYMTYA :..::. :: .::.:. ::: .:....::: . ::::...:.....:: :.:..:. CCDS11 PSDLTVGQFYFLIRKRIHLRAEDALFFFVNN-VIPPTSATMGQLYQEHHEEDFFLYIAYS 60 70 80 90 100 110 130 140 pF1KE2 SQETFGCLESAAPRDGSSLEDRPCNPL .. ..: CCDS11 DESVYGL 147 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Fri Nov 4 21:30:55 2016 done: Fri Nov 4 21:30:55 2016 Total Scan time: 1.830 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]