FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3035, 168 aa 1>>>pF1KE3035 168 - 168 aa - 168 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.9954+/-0.000647; mu= 14.3050+/- 0.039 mean_var=64.6551+/-12.815, 0's: 0 Z-trim(110.9): 23 B-trim: 114 in 1/49 Lambda= 0.159504 statistics sampled from 11970 (11987) to 11970 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.761), E-opt: 0.2 (0.368), width: 16 Scan time: 1.520 The best scores are: opt bits E(32554) CCDS31070.1 GREM2 gene_id:64388|Hs108|chr1 ( 168) 1150 272.5 8.5e-74 CCDS10029.1 GREM1 gene_id:26585|Hs108|chr15 ( 184) 622 151.0 3.4e-37 CCDS53927.1 GREM1 gene_id:26585|Hs108|chr15 ( 143) 577 140.6 3.7e-34 CCDS196.2 NBL1 gene_id:4681|Hs108|chr1 ( 181) 249 65.2 2.3e-11 CCDS72720.1 NBL1 gene_id:4681|Hs108|chr1 ( 215) 249 65.2 2.7e-11 CCDS41278.1 NBL1 gene_id:4681|Hs108|chr1 ( 216) 249 65.2 2.7e-11 >>CCDS31070.1 GREM2 gene_id:64388|Hs108|chr1 (168 aa) initn: 1150 init1: 1150 opt: 1150 Z-score: 1438.4 bits: 272.5 E(32554): 8.5e-74 Smith-Waterman score: 1150; 100.0% identity (100.0% similar) in 168 aa overlap (1-168:1-168) 10 20 30 40 50 60 pF1KE3 MFWKLSLSLFLVAVLVKVAEARKNRPAGAIPSPYKDGSSNNSERWQHQIKEVLASSQEAL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 MFWKLSLSLFLVAVLVKVAEARKNRPAGAIPSPYKDGSSNNSERWQHQIKEVLASSQEAL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 VVTERKYLKSDWCKTQPLRQTVSEEGCRSRTILNRFCYGQCNSFYIPRHVKKEEESFQSC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 VVTERKYLKSDWCKTQPLRQTVSEEGCRSRTILNRFCYGQCNSFYIPRHVKKEEESFQSC 70 80 90 100 110 120 130 140 150 160 pF1KE3 AFCKPQRVTSVLVELECPGLDPPFRLKKIQKVKQCRCMSVNLSDSDKQ :::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 AFCKPQRVTSVLVELECPGLDPPFRLKKIQKVKQCRCMSVNLSDSDKQ 130 140 150 160 >>CCDS10029.1 GREM1 gene_id:26585|Hs108|chr15 (184 aa) initn: 675 init1: 614 opt: 622 Z-score: 781.2 bits: 151.0 E(32554): 3.4e-37 Smith-Waterman score: 647; 55.5% identity (75.1% similar) in 173 aa overlap (9-162:12-183) 10 20 30 40 50 pF1KE3 MFWKLSLSLFLVAVLVKVAEARKNRPAGAIPSPYKDGSSNNSERWQHQIK------- :.:...:. .::..:. :::: : : .. :.::. : . CCDS10 MSRTAYTVGALLLLLGTLLPAAEGKKKGSQGAIPPPDK-AQHNDSEQTQSPQQPGSRNRG 10 20 30 40 50 60 70 80 90 pF1KE3 ------------EVLASSQEALVVTERKYLKSDWCKTQPLRQTVSEEGCRSRTILNRFCY ::: :::::: :::::::: ::::::::.::. :::: ::::.::::: CCDS10 RGQGRGTAMPGEEVLESSQEALHVTERKYLKRDWCKTQPLKQTIHEEGCNSRTIINRFCY 60 70 80 90 100 110 100 110 120 130 140 150 pF1KE3 GQCNSFYIPRHVKKEEESFQSCAFCKPQRVTSVLVELECPGLDPPFRLKKIQKVKQCRCM :::::::::::..::: :::::.::::.. :...: :.:: :.:: . :.. .::::::. CCDS10 GQCNSFYIPRHIRKEEGSFQSCSFCKPKKFTTMMVTLNCPELQPPTKKKRVTRVKQCRCI 120 130 140 150 160 170 160 pF1KE3 SVNLSDSDKQ :..: CCDS10 SIDLD 180 >>CCDS53927.1 GREM1 gene_id:26585|Hs108|chr15 (143 aa) initn: 617 init1: 576 opt: 577 Z-score: 726.8 bits: 140.6 E(32554): 3.7e-34 Smith-Waterman score: 592; 55.2% identity (74.0% similar) in 154 aa overlap (9-162:12-142) 10 20 30 40 50 pF1KE3 MFWKLSLSLFLVAVLVKVAEARKNRPAGAIPSPYKDGSSNNSERWQHQIKEVLASSQ :.:...:. .::..:. :::: : : CCDS53 MSRTAYTVGALLLLLGTLLPAAEGKKKGSQGAIPPPDK---------------------- 10 20 30 60 70 80 90 100 110 pF1KE3 EALVVTERKYLKSDWCKTQPLRQTVSEEGCRSRTILNRFCYGQCNSFYIPRHVKKEEESF :: :::::::: ::::::::.::. :::: ::::.::::::::::::::::..::: :: CCDS53 -ALHVTERKYLKRDWCKTQPLKQTIHEEGCNSRTIINRFCYGQCNSFYIPRHIRKEEGSF 40 50 60 70 80 90 120 130 140 150 160 pF1KE3 QSCAFCKPQRVTSVLVELECPGLDPPFRLKKIQKVKQCRCMSVNLSDSDKQ :::.::::.. :...: :.:: :.:: . :.. .::::::.:..: CCDS53 QSCSFCKPKKFTTMMVTLNCPELQPPTKKKRVTRVKQCRCISIDLD 100 110 120 130 140 >>CCDS196.2 NBL1 gene_id:4681|Hs108|chr1 (181 aa) initn: 231 init1: 217 opt: 249 Z-score: 317.4 bits: 65.2 E(32554): 2.3e-11 Smith-Waterman score: 249; 35.9% identity (62.0% similar) in 92 aa overlap (69-159:31-122) 40 50 60 70 80 90 pF1KE3 SNNSERWQHQIKEVLASSQEALVVTERKYLKSDWCKTQPLRQTVSEEGCRSRTILNRFCY :: ::... . : :.. ::....: :: : CCDS19 MMLRVLVGAVLPAMLLAAPPPINKLALFPDKSAWCEAKNITQIVGHSGCEAKSIQNRACL 10 20 30 40 50 60 100 110 120 130 140 150 pF1KE3 GQCNSFYIPRHVKKEEESFQSCAFCKPQRVTSVLVELECPGLDPPFRLKK-IQKVKQCRC ::: :. .: . ::. : : : . .: ::::: . :. : ..:. .: : CCDS19 GQCFSYSVPNTFPQSTESLVHCDSCMPAQSMWEIVTLECPGHEEVPRVDKLVEKILHCSC 70 80 90 100 110 120 160 pF1KE3 MSVNLSDSDKQ .. CCDS19 QACGKEPSHEGLSVYVQGEDGPGSQPGTHPHPHPHPHPGGQTPEPEDPPGAPHTEEEGAE 130 140 150 160 170 180 >>CCDS72720.1 NBL1 gene_id:4681|Hs108|chr1 (215 aa) initn: 248 init1: 217 opt: 249 Z-score: 316.3 bits: 65.2 E(32554): 2.7e-11 Smith-Waterman score: 249; 35.9% identity (62.0% similar) in 92 aa overlap (69-159:65-156) 40 50 60 70 80 90 pF1KE3 SNNSERWQHQIKEVLASSQEALVVTERKYLKSDWCKTQPLRQTVSEEGCRSRTILNRFCY :: ::... . : :.. ::....: :: : CCDS72 MMLRVLVGAVLPAMLLAAPPPINKLALFPDKSAWCEAKNITQIVGHSGCEAKSIQNRACL 40 50 60 70 80 90 100 110 120 130 140 150 pF1KE3 GQCNSFYIPRHVKKEEESFQSCAFCKPQRVTSVLVELECPGLDPPFRLKK-IQKVKQCRC ::: :. .: . ::. : : : . .: ::::: . :. : ..:. .: : CCDS72 GQCFSYSVPNTFPQSTESLVHCDSCMPAQSMWEIVTLECPGHEEVPRVDKLVEKILHCSC 100 110 120 130 140 150 160 pF1KE3 MSVNLSDSDKQ .. CCDS72 QACGKEPSHEGLSVYVQGEDGPGSQPGTHPHPHPHPHPGGQTPEPEDPPGAPHTEEEGAE 160 170 180 190 200 210 >>CCDS41278.1 NBL1 gene_id:4681|Hs108|chr1 (216 aa) initn: 231 init1: 217 opt: 249 Z-score: 316.3 bits: 65.2 E(32554): 2.7e-11 Smith-Waterman score: 249; 35.9% identity (62.0% similar) in 92 aa overlap (69-159:66-157) 40 50 60 70 80 90 pF1KE3 SNNSERWQHQIKEVLASSQEALVVTERKYLKSDWCKTQPLRQTVSEEGCRSRTILNRFCY :: ::... . : :.. ::....: :: : CCDS41 MMLRVLVGAVLPAMLLAAPPPINKLALFPDKSAWCEAKNITQIVGHSGCEAKSIQNRACL 40 50 60 70 80 90 100 110 120 130 140 150 pF1KE3 GQCNSFYIPRHVKKEEESFQSCAFCKPQRVTSVLVELECPGLDPPFRLKK-IQKVKQCRC ::: :. .: . ::. : : : . .: ::::: . :. : ..:. .: : CCDS41 GQCFSYSVPNTFPQSTESLVHCDSCMPAQSMWEIVTLECPGHEEVPRVDKLVEKILHCSC 100 110 120 130 140 150 160 pF1KE3 MSVNLSDSDKQ .. CCDS41 QACGKEPSHEGLSVYVQGEDGPGSQPGTHPHPHPHPHPGGQTPEPEDPPGAPHTEEEGAE 160 170 180 190 200 210 168 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 12:38:47 2016 done: Sun Nov 6 12:38:48 2016 Total Scan time: 1.520 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]