FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE9617, 344 aa 1>>>pF1KE9617 344 - 344 aa - 344 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.6136+/-0.000367; mu= 14.4552+/- 0.023 mean_var=67.2637+/-13.621, 0's: 0 Z-trim(113.5): 7 B-trim: 0 in 0/53 Lambda= 0.156381 statistics sampled from 22804 (22811) to 22804 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.655), E-opt: 0.2 (0.267), width: 16 Scan time: 7.960 The best scores are: opt bits E(85289) NP_201576 (OMIM: 611503) centromere protein L isof ( 344) 2315 531.2 1.2e-150 NP_001164653 (OMIM: 611503) centromere protein L i ( 344) 2315 531.2 1.2e-150 NP_001120653 (OMIM: 611503) centromere protein L i ( 390) 1404 325.7 1e-88 >>NP_201576 (OMIM: 611503) centromere protein L isoform (344 aa) initn: 2315 init1: 2315 opt: 2315 Z-score: 2825.4 bits: 531.2 E(85289): 1.2e-150 Smith-Waterman score: 2315; 100.0% identity (100.0% similar) in 344 aa overlap (1-344:1-344) 10 20 30 40 50 60 pF1KE9 MDSYSAPESTPSASSRPEDYFIGATPLQKRLESVRKQSSFILTPPRRKIPQCSQLQEDVD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_201 MDSYSAPESTPSASSRPEDYFIGATPLQKRLESVRKQSSFILTPPRRKIPQCSQLQEDVD 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE9 PQKVAFLLHKQWTLYSLTPLYKFSYSNLKEYSRLLNAFIVAEKQKGLAVEVGEDFNIKVI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_201 PQKVAFLLHKQWTLYSLTPLYKFSYSNLKEYSRLLNAFIVAEKQKGLAVEVGEDFNIKVI 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE9 FSTLLGMKGTQRDPEAFLVQIVSKSQLPSENREGKVLWTGWFCCVFGDSLLETVSEDFTC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_201 FSTLLGMKGTQRDPEAFLVQIVSKSQLPSENREGKVLWTGWFCCVFGDSLLETVSEDFTC 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE9 LPLFLANGAESNTAIIGTWFQKTFDCYFSPLAINAFNLSWMAAMWTACKMDHYVATTEFL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_201 LPLFLANGAESNTAIIGTWFQKTFDCYFSPLAINAFNLSWMAAMWTACKMDHYVATTEFL 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE9 WSVPCSPQSLDISFAIHPEDAKALWDSVHKTPGEVTQEEVDLFMDCLYSHFHRHFKIHLS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_201 WSVPCSPQSLDISFAIHPEDAKALWDSVHKTPGEVTQEEVDLFMDCLYSHFHRHFKIHLS 250 260 270 280 290 300 310 320 330 340 pF1KE9 ATRLVRVSTSVASAHTDGKIKILCHKYLIGVLAYLTELAIFQIE :::::::::::::::::::::::::::::::::::::::::::: NP_201 ATRLVRVSTSVASAHTDGKIKILCHKYLIGVLAYLTELAIFQIE 310 320 330 340 >>NP_001164653 (OMIM: 611503) centromere protein L isofo (344 aa) initn: 2315 init1: 2315 opt: 2315 Z-score: 2825.4 bits: 531.2 E(85289): 1.2e-150 Smith-Waterman score: 2315; 100.0% identity (100.0% similar) in 344 aa overlap (1-344:1-344) 10 20 30 40 50 60 pF1KE9 MDSYSAPESTPSASSRPEDYFIGATPLQKRLESVRKQSSFILTPPRRKIPQCSQLQEDVD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MDSYSAPESTPSASSRPEDYFIGATPLQKRLESVRKQSSFILTPPRRKIPQCSQLQEDVD 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE9 PQKVAFLLHKQWTLYSLTPLYKFSYSNLKEYSRLLNAFIVAEKQKGLAVEVGEDFNIKVI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 PQKVAFLLHKQWTLYSLTPLYKFSYSNLKEYSRLLNAFIVAEKQKGLAVEVGEDFNIKVI 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE9 FSTLLGMKGTQRDPEAFLVQIVSKSQLPSENREGKVLWTGWFCCVFGDSLLETVSEDFTC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 FSTLLGMKGTQRDPEAFLVQIVSKSQLPSENREGKVLWTGWFCCVFGDSLLETVSEDFTC 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE9 LPLFLANGAESNTAIIGTWFQKTFDCYFSPLAINAFNLSWMAAMWTACKMDHYVATTEFL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 LPLFLANGAESNTAIIGTWFQKTFDCYFSPLAINAFNLSWMAAMWTACKMDHYVATTEFL 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE9 WSVPCSPQSLDISFAIHPEDAKALWDSVHKTPGEVTQEEVDLFMDCLYSHFHRHFKIHLS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 WSVPCSPQSLDISFAIHPEDAKALWDSVHKTPGEVTQEEVDLFMDCLYSHFHRHFKIHLS 250 260 270 280 290 300 310 320 330 340 pF1KE9 ATRLVRVSTSVASAHTDGKIKILCHKYLIGVLAYLTELAIFQIE :::::::::::::::::::::::::::::::::::::::::::: NP_001 ATRLVRVSTSVASAHTDGKIKILCHKYLIGVLAYLTELAIFQIE 310 320 330 340 >>NP_001120653 (OMIM: 611503) centromere protein L isofo (390 aa) initn: 1404 init1: 1404 opt: 1404 Z-score: 1713.7 bits: 325.7 E(85289): 1e-88 Smith-Waterman score: 2124; 87.8% identity (87.8% similar) in 376 aa overlap (15-344:15-390) 10 20 30 40 50 60 pF1KE9 MDSYSAPESTPSASSRPEDYFIGATPLQKRLESVRKQSSFILTPPRRKIPQCSQLQEDVD :::::::::::::::::::::::::::::::::::::::::::::: NP_001 MDSYSAPESTPSASSRPEDYFIGATPLQKRLESVRKQSSFILTPPRRKIPQCSQLQEDVD 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE9 PQKVAFLLHKQWTLYSLTPLYKFSYSNLKEYSRLLNAFIVAEKQKGLAVEVGEDFNIKVI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 PQKVAFLLHKQWTLYSLTPLYKFSYSNLKEYSRLLNAFIVAEKQKGLAVEVGEDFNIKVI 70 80 90 100 110 120 130 140 pF1KE9 FSTLLGMKGTQRDPEAFLVQ---------------------------------------- :::::::::::::::::::: NP_001 FSTLLGMKGTQRDPEAFLVQGLILSPRLEYSGTILVDCNLCLLGSSDPSTLAFQVAGTAG 130 140 150 160 170 180 150 160 170 180 190 pF1KE9 ------IVSKSQLPSENREGKVLWTGWFCCVFGDSLLETVSEDFTCLPLFLANGAESNTA :::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 ACHHTRIVSKSQLPSENREGKVLWTGWFCCVFGDSLLETVSEDFTCLPLFLANGAESNTA 190 200 210 220 230 240 200 210 220 230 240 250 pF1KE9 IIGTWFQKTFDCYFSPLAINAFNLSWMAAMWTACKMDHYVATTEFLWSVPCSPQSLDISF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 IIGTWFQKTFDCYFSPLAINAFNLSWMAAMWTACKMDHYVATTEFLWSVPCSPQSLDISF 250 260 270 280 290 300 260 270 280 290 300 310 pF1KE9 AIHPEDAKALWDSVHKTPGEVTQEEVDLFMDCLYSHFHRHFKIHLSATRLVRVSTSVASA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 AIHPEDAKALWDSVHKTPGEVTQEEVDLFMDCLYSHFHRHFKIHLSATRLVRVSTSVASA 310 320 330 340 350 360 320 330 340 pF1KE9 HTDGKIKILCHKYLIGVLAYLTELAIFQIE :::::::::::::::::::::::::::::: NP_001 HTDGKIKILCHKYLIGVLAYLTELAIFQIE 370 380 390 344 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 06:24:01 2016 done: Sun Nov 6 06:24:02 2016 Total Scan time: 7.960 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]