FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB7606, 356 aa 1>>>pF1KB7606 356 - 356 aa - 356 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.0718+/-0.000325; mu= 23.1688+/- 0.021 mean_var=190.2542+/-40.737, 0's: 0 Z-trim(121.5): 370 B-trim: 2116 in 1/54 Lambda= 0.092984 statistics sampled from 37612 (38118) to 37612 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.779), E-opt: 0.2 (0.447), width: 16 Scan time: 8.920 The best scores are: opt bits E(85289) NP_001001933 (OMIM: 604425) LIM/homeobox protein L ( 356) 2471 343.3 4.8e-94 NP_001243043 (OMIM: 604425) LIM/homeobox protein L ( 346) 2402 334.0 2.9e-91 XP_016856806 (OMIM: 604425) PREDICTED: LIM/homeobo ( 363) 2234 311.5 1.8e-84 XP_016856805 (OMIM: 604425) PREDICTED: LIM/homeobo ( 363) 2234 311.5 1.8e-84 NP_001229262 (OMIM: 608215) LIM/homeobox protein L ( 366) 1412 201.3 2.9e-51 NP_954629 (OMIM: 608215) LIM/homeobox protein Lhx6 ( 377) 1412 201.3 2.9e-51 XP_011516824 (OMIM: 608215) PREDICTED: LIM/homeobo ( 378) 1378 196.7 6.8e-50 XP_011516823 (OMIM: 608215) PREDICTED: LIM/homeobo ( 407) 1378 196.8 7.1e-50 NP_001229263 (OMIM: 608215) LIM/homeobox protein L ( 363) 1366 195.1 2e-49 NP_055183 (OMIM: 608215) LIM/homeobox protein Lhx6 ( 392) 1366 195.2 2.1e-49 XP_005251973 (OMIM: 608215) PREDICTED: LIM/homeobo ( 230) 831 123.0 6.6e-28 NP_001229264 (OMIM: 608215) LIM/homeobox protein L ( 176) 591 90.6 2.9e-18 XP_005263467 (OMIM: 221750,600577) PREDICTED: LIM/ ( 386) 455 72.9 1.3e-12 XP_016870657 (OMIM: 221750,600577) PREDICTED: LIM/ ( 373) 450 72.2 2e-12 NP_835258 (OMIM: 221750,600577) LIM/homeobox prote ( 397) 450 72.3 2.1e-12 NP_055379 (OMIM: 221750,600577) LIM/homeobox prote ( 402) 450 72.3 2.1e-12 NP_203129 (OMIM: 262700,602146) LIM/homeobox prote ( 390) 438 70.7 6.3e-12 XP_005245407 (OMIM: 606066) PREDICTED: LIM/homeobo ( 336) 427 69.1 1.6e-11 NP_665804 (OMIM: 609481) insulin gene enhancer pro ( 359) 426 69.0 1.9e-11 NP_002193 (OMIM: 600366) insulin gene enhancer pro ( 349) 425 68.8 2e-11 NP_002307 (OMIM: 161200,602575) LIM homeobox trans ( 395) 425 68.9 2.1e-11 NP_001167618 (OMIM: 161200,602575) LIM homeobox tr ( 402) 425 68.9 2.1e-11 NP_001167617 (OMIM: 161200,602575) LIM homeobox tr ( 406) 425 69.0 2.2e-11 XP_016877994 (OMIM: 609481) PREDICTED: insulin gen ( 534) 426 69.3 2.2e-11 XP_006717386 (OMIM: 603759) PREDICTED: LIM/homeobo ( 314) 417 67.7 4e-11 NP_071758 (OMIM: 605992) LIM/homeobox protein Lhx5 ( 402) 412 67.2 7.2e-11 NP_005559 (OMIM: 601999) LIM/homeobox protein Lhx1 ( 406) 405 66.3 1.4e-10 XP_011507842 (OMIM: 600298) PREDICTED: LIM homeobo ( 279) 402 65.6 1.5e-10 NP_001167540 (OMIM: 600298) LIM homeobox transcrip ( 382) 402 65.8 1.8e-10 NP_796372 (OMIM: 600298) LIM homeobox transcriptio ( 382) 402 65.8 1.8e-10 XP_005271348 (OMIM: 603129) PREDICTED: LIM domain ( 165) 387 63.2 4.8e-10 NP_006760 (OMIM: 603129) LIM domain transcription ( 165) 387 63.2 4.8e-10 XP_011518400 (OMIM: 186921) PREDICTED: rhombotin-1 ( 145) 347 57.7 1.9e-08 XP_011518401 (OMIM: 186921) PREDICTED: rhombotin-1 ( 145) 347 57.7 1.9e-08 NP_001257357 (OMIM: 186921) rhombotin-1 isoform b ( 155) 347 57.8 1.9e-08 NP_002306 (OMIM: 186921) rhombotin-1 isoform a [Ho ( 156) 347 57.8 1.9e-08 XP_006718291 (OMIM: 186921) PREDICTED: rhombotin-1 ( 193) 347 57.9 2.1e-08 XP_011519064 (OMIM: 180386) PREDICTED: LIM domain ( 145) 340 56.8 3.6e-08 NP_061110 (OMIM: 180386) LIM domain only protein 3 ( 145) 340 56.8 3.6e-08 XP_011519065 (OMIM: 180386) PREDICTED: LIM domain ( 145) 340 56.8 3.6e-08 NP_001001395 (OMIM: 180386) LIM domain only protei ( 145) 340 56.8 3.6e-08 NP_001230538 (OMIM: 180386) LIM domain only protei ( 145) 340 56.8 3.6e-08 XP_006719174 (OMIM: 180386) PREDICTED: LIM domain ( 145) 340 56.8 3.6e-08 NP_001230539 (OMIM: 180386) LIM domain only protei ( 145) 340 56.8 3.6e-08 XP_006719173 (OMIM: 180386) PREDICTED: LIM domain ( 145) 340 56.8 3.6e-08 NP_001230540 (OMIM: 180386) LIM domain only protei ( 156) 340 56.8 3.7e-08 NP_001230541 (OMIM: 180386) LIM domain only protei ( 163) 340 56.9 3.8e-08 NP_005565 (OMIM: 180385) rhombotin-2 isoform 1 [Ho ( 227) 335 56.4 7.1e-08 XP_016873218 (OMIM: 180385) PREDICTED: rhombotin-2 ( 158) 320 54.1 2.4e-07 NP_001135788 (OMIM: 180385) rhombotin-2 isoform 2 ( 158) 320 54.1 2.4e-07 >>NP_001001933 (OMIM: 604425) LIM/homeobox protein Lhx8 (356 aa) initn: 2471 init1: 2471 opt: 2471 Z-score: 1809.3 bits: 343.3 E(85289): 4.8e-94 Smith-Waterman score: 2471; 99.7% identity (100.0% similar) in 356 aa overlap (1-356:1-356) 10 20 30 40 50 60 pF1KB7 MQILSRCQGLMSEECGRTTALAAGRTRKGAGEEGLVSPEGAGDEDSCSSSAPLSPSSSPR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MQILSRCQGLMSEECGRTTALAAGRTRKGAGEEGLVSPEGAGDEDSCSSSAPLSPSSSPR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB7 SMASGSGCPPGKCVCNSCGLEIVDKYLLKVNDLCWHVRCLSCSVCRTSLGRHTSCYIKDK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 SMASGSGCPPGKCVCNSCGLEIVDKYLLKVNDLCWHVRCLSCSVCRTSLGRHTSCYIKDK 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB7 DIFCKLDYFRRYGTRCSRCGRHIHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 DIFCKLDYFRRYGTRCSRCGRHIHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALV 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB7 EEKVLCRVHYDCMLDNLKREVENGNGISVEGALLTEQDVNHPKPAKRARTSFTADQLQVM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 EEKVLCRVHYDCMLDNLKREVENGNGISVEGALLTEQDVNHPKPAKRARTSFTADQLQVM 190 200 210 220 230 240 250 260 270 280 290 300 pF1KB7 QAQFAQDNNPDAQTLQKLAERTGLSRRVIQVWFQNCRARHKKHVSPNHSSSTPVTAAPPS ::::::::::::::::::::::::::::::::::::::::::::::::::::::::.::: NP_001 QAQFAQDNNPDAQTLQKLAERTGLSRRVIQVWFQNCRARHKKHVSPNHSSSTPVTAVPPS 250 260 270 280 290 300 310 320 330 340 350 pF1KB7 RLSPPMLEEMAYSAYVPQDGTMLTALHSYMDAHSPTTLGLQPLLPHSMTQLPISHT :::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 RLSPPMLEEMAYSAYVPQDGTMLTALHSYMDAHSPTTLGLQPLLPHSMTQLPISHT 310 320 330 340 350 >>NP_001243043 (OMIM: 604425) LIM/homeobox protein Lhx8 (346 aa) initn: 2402 init1: 2402 opt: 2402 Z-score: 1759.4 bits: 334.0 E(85289): 2.9e-91 Smith-Waterman score: 2402; 99.7% identity (100.0% similar) in 346 aa overlap (11-356:1-346) 10 20 30 40 50 60 pF1KB7 MQILSRCQGLMSEECGRTTALAAGRTRKGAGEEGLVSPEGAGDEDSCSSSAPLSPSSSPR :::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MSEECGRTTALAAGRTRKGAGEEGLVSPEGAGDEDSCSSSAPLSPSSSPR 10 20 30 40 50 70 80 90 100 110 120 pF1KB7 SMASGSGCPPGKCVCNSCGLEIVDKYLLKVNDLCWHVRCLSCSVCRTSLGRHTSCYIKDK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 SMASGSGCPPGKCVCNSCGLEIVDKYLLKVNDLCWHVRCLSCSVCRTSLGRHTSCYIKDK 60 70 80 90 100 110 130 140 150 160 170 180 pF1KB7 DIFCKLDYFRRYGTRCSRCGRHIHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 DIFCKLDYFRRYGTRCSRCGRHIHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALV 120 130 140 150 160 170 190 200 210 220 230 240 pF1KB7 EEKVLCRVHYDCMLDNLKREVENGNGISVEGALLTEQDVNHPKPAKRARTSFTADQLQVM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 EEKVLCRVHYDCMLDNLKREVENGNGISVEGALLTEQDVNHPKPAKRARTSFTADQLQVM 180 190 200 210 220 230 250 260 270 280 290 300 pF1KB7 QAQFAQDNNPDAQTLQKLAERTGLSRRVIQVWFQNCRARHKKHVSPNHSSSTPVTAAPPS ::::::::::::::::::::::::::::::::::::::::::::::::::::::::.::: NP_001 QAQFAQDNNPDAQTLQKLAERTGLSRRVIQVWFQNCRARHKKHVSPNHSSSTPVTAVPPS 240 250 260 270 280 290 310 320 330 340 350 pF1KB7 RLSPPMLEEMAYSAYVPQDGTMLTALHSYMDAHSPTTLGLQPLLPHSMTQLPISHT :::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 RLSPPMLEEMAYSAYVPQDGTMLTALHSYMDAHSPTTLGLQPLLPHSMTQLPISHT 300 310 320 330 340 >>XP_016856806 (OMIM: 604425) PREDICTED: LIM/homeobox pr (363 aa) initn: 2233 init1: 2233 opt: 2234 Z-score: 1637.4 bits: 311.5 E(85289): 1.8e-84 Smith-Waterman score: 2234; 97.3% identity (98.8% similar) in 331 aa overlap (11-340:1-331) 10 20 30 40 50 60 pF1KB7 MQILSRCQGLMSEECGRTTALAAGRTRKGAGEEGLVSPEGAGDEDSCSSSAPLSPSSSPR :::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 MSEECGRTTALAAGRTRKGAGEEGLVSPEGAGDEDSCSSSAPLSPSSSPR 10 20 30 40 50 70 80 90 100 110 120 pF1KB7 SMASGSGCPPGKCVCNSCGLEIVDKYLLKVNDLCWHVRCLSCSVCRTSLGRHTSCYIKDK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 SMASGSGCPPGKCVCNSCGLEIVDKYLLKVNDLCWHVRCLSCSVCRTSLGRHTSCYIKDK 60 70 80 90 100 110 130 140 150 160 170 180 pF1KB7 DIFCKLDYFRRYGTRCSRCGRHIHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 DIFCKLDYFRRYGTRCSRCGRHIHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALV 120 130 140 150 160 170 190 200 210 220 230 240 pF1KB7 EEKVLCRVHYDCMLDNLKREVENGNGISVEGALLTEQDVNHPKPAKRARTSFTADQLQVM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 EEKVLCRVHYDCMLDNLKREVENGNGISVEGALLTEQDVNHPKPAKRARTSFTADQLQVM 180 190 200 210 220 230 250 260 270 280 290 300 pF1KB7 QAQFAQDNNPDAQTLQKLAERTGLSRRVIQVWFQNCRARHKKHVSPNHSSSTPVTAAPPS ::::::::::::::::::::::::::::::::::::::::::::::::::::::::.::: XP_016 QAQFAQDNNPDAQTLQKLAERTGLSRRVIQVWFQNCRARHKKHVSPNHSSSTPVTAVPPS 240 250 260 270 280 290 310 320 330 340 350 pF1KB7 RLSPPMLEEMAYSAYVPQDGTMLTALHSYMD-AHSPTTLGLQPLLPHSMTQLPISHT ::::::::::::::::::::::::::::::: .:. . . : XP_016 RLSPPMLEEMAYSAYVPQDGTMLTALHSYMDDTHAAVHIHLPGRMWRFQGYSNNGSSSGS 300 310 320 330 340 350 XP_016 TLICKYNENIFLF 360 >>XP_016856805 (OMIM: 604425) PREDICTED: LIM/homeobox pr (363 aa) initn: 2233 init1: 2233 opt: 2234 Z-score: 1637.4 bits: 311.5 E(85289): 1.8e-84 Smith-Waterman score: 2234; 97.3% identity (98.8% similar) in 331 aa overlap (11-340:1-331) 10 20 30 40 50 60 pF1KB7 MQILSRCQGLMSEECGRTTALAAGRTRKGAGEEGLVSPEGAGDEDSCSSSAPLSPSSSPR :::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 MSEECGRTTALAAGRTRKGAGEEGLVSPEGAGDEDSCSSSAPLSPSSSPR 10 20 30 40 50 70 80 90 100 110 120 pF1KB7 SMASGSGCPPGKCVCNSCGLEIVDKYLLKVNDLCWHVRCLSCSVCRTSLGRHTSCYIKDK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 SMASGSGCPPGKCVCNSCGLEIVDKYLLKVNDLCWHVRCLSCSVCRTSLGRHTSCYIKDK 60 70 80 90 100 110 130 140 150 160 170 180 pF1KB7 DIFCKLDYFRRYGTRCSRCGRHIHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 DIFCKLDYFRRYGTRCSRCGRHIHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALV 120 130 140 150 160 170 190 200 210 220 230 240 pF1KB7 EEKVLCRVHYDCMLDNLKREVENGNGISVEGALLTEQDVNHPKPAKRARTSFTADQLQVM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 EEKVLCRVHYDCMLDNLKREVENGNGISVEGALLTEQDVNHPKPAKRARTSFTADQLQVM 180 190 200 210 220 230 250 260 270 280 290 300 pF1KB7 QAQFAQDNNPDAQTLQKLAERTGLSRRVIQVWFQNCRARHKKHVSPNHSSSTPVTAAPPS ::::::::::::::::::::::::::::::::::::::::::::::::::::::::.::: XP_016 QAQFAQDNNPDAQTLQKLAERTGLSRRVIQVWFQNCRARHKKHVSPNHSSSTPVTAVPPS 240 250 260 270 280 290 310 320 330 340 350 pF1KB7 RLSPPMLEEMAYSAYVPQDGTMLTALHSYMD-AHSPTTLGLQPLLPHSMTQLPISHT ::::::::::::::::::::::::::::::: .:. . . : XP_016 RLSPPMLEEMAYSAYVPQDGTMLTALHSYMDDTHAAVHIHLPGRMWRFQGYSNNGSSSGS 300 310 320 330 340 350 XP_016 TLICKYNENIFLF 360 >>NP_001229262 (OMIM: 608215) LIM/homeobox protein Lhx6 (366 aa) initn: 1381 init1: 881 opt: 1412 Z-score: 1041.5 bits: 201.3 E(85289): 2.9e-51 Smith-Waterman score: 1412; 60.8% identity (80.4% similar) in 347 aa overlap (15-354:26-365) 10 20 30 40 pF1KB7 MQILSRCQGLMSEECGRTTALAAGRTRKGAGEEGLVSPEGAGDEDSCSS : :: : . . .. . :: :.: .. NP_001 MRRGLCRRSAENPDAGPVMAQPGSGCKATTRCLEGTAPPAMAQSDAEALAGALDKDEGQA 10 20 30 40 50 60 50 60 70 80 90 100 pF1KB7 SAPLSPSS----SPRSMASGSGCPPGKCVCNSCGLEIVDKYLLKVNDLCWHVRCLSCSVC : : .::. :: : :: : :: .:.::::::.:.::::::.: :::::: :::: NP_001 S-PCTPSTPSVCSPPSAAS-SVPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVC 70 80 90 100 110 110 120 130 140 150 160 pF1KB7 RTSLGRHTSCYIKDKDIFCKLDYFRRYGTRCSRCGRHIHSTDWVRRAKGNVYHLACFACF :::: ...:::::.:.::::.::: :.::.:.::::.:...::::::.::.::::::::: NP_001 RTSLRQQNSCYIKNKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACF 120 130 140 150 160 170 170 180 190 200 210 220 pF1KB7 SCKRQLSTGEEFALVEEKVLCRVHYDCMLDNLKREVENGNGISVEGALLTEQDVNHPKPA ::::::::::::.:::::::::.::: :..:::: .:::::...:::. .::: ..:::: NP_001 SCKRQLSTGEEFGLVEEKVLCRIHYDTMIENLKRAAENGNGLTLEGAVPSEQD-SQPKPA 180 190 200 210 220 230 230 240 250 260 270 280 pF1KB7 KRARTSFTADQLQVMQAQFAQDNNPDAQTLQKLAERTGLSRRVIQVWFQNCRARHKKHVS :::::::::.::::::::::::::::::::::::. :::::::::::::::::::::: . NP_001 KRARTSFTAEQLQVMQAQFAQDNNPDAQTLQKLADMTGLSRRVIQVWFQNCRARHKKH-T 240 250 260 270 280 290 290 300 310 320 330 340 pF1KB7 PNHSSSTPVTAAPPSRLSPPMLEEMAYSAYVPQDGTMLTALHSYMDAHSPTTLGLQPLLP :.: .: ..:::::: . ... :. . . . ...::.:...: ..: : : :: NP_001 PQH--PVPPSGAPPSRLPSALSDDIHYTPFSSPERARMVTLHGYIESHPFSVLTL-PALP 300 310 320 330 340 350 350 pF1KB7 H---SMTQLPISHT : . :::.: NP_001 HLPVGAPQLPLSR 360 >>NP_954629 (OMIM: 608215) LIM/homeobox protein Lhx6 iso (377 aa) initn: 1381 init1: 881 opt: 1412 Z-score: 1041.4 bits: 201.3 E(85289): 2.9e-51 Smith-Waterman score: 1412; 60.8% identity (80.4% similar) in 347 aa overlap (15-354:37-376) 10 20 30 40 pF1KB7 MQILSRCQGLMSEECGRTTALAAGRTRKGAGEEGLVSPEGAGDE : :: : . . .. . :: :. NP_954 NAAPALPEGCRLPAEGGPATDQVMAQPGSGCKATTRCLEGTAPPAMAQSDAEALAGALDK 10 20 30 40 50 60 50 60 70 80 90 100 pF1KB7 DSCSSSAPLSPSS----SPRSMASGSGCPPGKCVCNSCGLEIVDKYLLKVNDLCWHVRCL : ..: : .::. :: : :: : :: .:.::::::.:.::::::.: :::::: NP_954 DEGQAS-PCTPSTPSVCSPPSAAS-SVPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCL 70 80 90 100 110 120 110 120 130 140 150 160 pF1KB7 SCSVCRTSLGRHTSCYIKDKDIFCKLDYFRRYGTRCSRCGRHIHSTDWVRRAKGNVYHLA :::::::: ...:::::.:.::::.::: :.::.:.::::.:...::::::.::.:::: NP_954 ECSVCRTSLRQQNSCYIKNKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLA 130 140 150 160 170 180 170 180 190 200 210 220 pF1KB7 CFACFSCKRQLSTGEEFALVEEKVLCRVHYDCMLDNLKREVENGNGISVEGALLTEQDVN :::::::::::::::::.:::::::::.::: :..:::: .:::::...:::. .::: . NP_954 CFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTMIENLKRAAENGNGLTLEGAVPSEQD-S 190 200 210 220 230 240 230 240 250 260 270 280 pF1KB7 HPKPAKRARTSFTADQLQVMQAQFAQDNNPDAQTLQKLAERTGLSRRVIQVWFQNCRARH .:::::::::::::.::::::::::::::::::::::::. ::::::::::::::::::: NP_954 QPKPAKRARTSFTAEQLQVMQAQFAQDNNPDAQTLQKLADMTGLSRRVIQVWFQNCRARH 250 260 270 280 290 300 290 300 310 320 330 340 pF1KB7 KKHVSPNHSSSTPVTAAPPSRLSPPMLEEMAYSAYVPQDGTMLTALHSYMDAHSPTTLGL ::: .:.: .: ..:::::: . ... :. . . . ...::.:...: ..: : NP_954 KKH-TPQH--PVPPSGAPPSRLPSALSDDIHYTPFSSPERARMVTLHGYIESHPFSVLTL 310 320 330 340 350 360 350 pF1KB7 QPLLPH---SMTQLPISHT : ::: . :::.: NP_954 -PALPHLPVGAPQLPLSR 370 >>XP_011516824 (OMIM: 608215) PREDICTED: LIM/homeobox pr (378 aa) initn: 1358 init1: 881 opt: 1378 Z-score: 1016.7 bits: 196.7 E(85289): 6.8e-50 Smith-Waterman score: 1378; 59.8% identity (79.8% similar) in 341 aa overlap (15-351:8-342) 10 20 30 40 50 pF1KB7 MQILSRCQGLMSEECGRTTALAAGRTRKGAGEEGLVSPEGAGDEDSCSSSAPLSPSS--- : :: : . . .. . :: :.: ..: : .::. XP_011 MAQPGSGCKATTRCLEGTAPPAMAQSDAEALAGALDKDEGQAS-PCTPSTPSV 10 20 30 40 50 60 70 80 90 100 110 pF1KB7 -SPRSMASGSGCPPGKCVCNSCGLEIVDKYLLKVNDLCWHVRCLSCSVCRTSLGRHTSCY :: : :: : :: .:.::::::.:.::::::.: :::::: :::::::: ...::: XP_011 CSPPSAAS-SVPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNSCY 60 70 80 90 100 110 120 130 140 150 160 170 pF1KB7 IKDKDIFCKLDYFRRYGTRCSRCGRHIHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEE ::.:.::::.::: :.::.:.::::.:...::::::.::.:::::::::::::::::::: XP_011 IKNKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEE 120 130 140 150 160 170 180 190 200 210 220 230 pF1KB7 FALVEEKVLCRVHYDCMLDNLKREVENGNGISVEGALLTEQDVNHPKPAKRARTSFTADQ :.:::::::::.::: :..:::: .:::::...:::. .::: ..:::::::::::::.: XP_011 FGLVEEKVLCRIHYDTMIENLKRAAENGNGLTLEGAVPSEQD-SQPKPAKRARTSFTAEQ 180 190 200 210 220 230 240 250 260 270 280 290 pF1KB7 LQVMQAQFAQDNNPDAQTLQKLAERTGLSRRVIQVWFQNCRARHKKHVSPNHSSSTPVTA :::::::::::::::::::::::. :::::::::::::::::::::: .:.: .: .. XP_011 LQVMQAQFAQDNNPDAQTLQKLADMTGLSRRVIQVWFQNCRARHKKH-TPQHP--VPPSG 240 250 260 270 280 300 310 320 330 340 350 pF1KB7 APPSRLSPPMLEEMAYSAYVPQDGTMLTALHSYMDAHSPTTLGLQPLLPHSMTQLPISHT :::::: . ... :. . . . ...::.:..... :. : . :: XP_011 APPSRLPSALSDDIHYTPFSSPERARMVTLHGYIETNARLLAGMCDWCGHLIWQLQRIIP 290 300 310 320 330 340 XP_011 PQSLHYGAANNTADKAWMSPRASLQVIITFR 350 360 370 >>XP_011516823 (OMIM: 608215) PREDICTED: LIM/homeobox pr (407 aa) initn: 1358 init1: 881 opt: 1378 Z-score: 1016.4 bits: 196.8 E(85289): 7.1e-50 Smith-Waterman score: 1378; 59.8% identity (79.8% similar) in 341 aa overlap (15-351:37-371) 10 20 30 40 pF1KB7 MQILSRCQGLMSEECGRTTALAAGRTRKGAGEEGLVSPEGAGDE : :: : . . .. . :: :. XP_011 NAAPALPEGCRLPAEGGPATDQVMAQPGSGCKATTRCLEGTAPPAMAQSDAEALAGALDK 10 20 30 40 50 60 50 60 70 80 90 100 pF1KB7 DSCSSSAPLSPSS----SPRSMASGSGCPPGKCVCNSCGLEIVDKYLLKVNDLCWHVRCL : ..: : .::. :: : :: : :: .:.::::::.:.::::::.: :::::: XP_011 DEGQAS-PCTPSTPSVCSPPSAAS-SVPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCL 70 80 90 100 110 120 110 120 130 140 150 160 pF1KB7 SCSVCRTSLGRHTSCYIKDKDIFCKLDYFRRYGTRCSRCGRHIHSTDWVRRAKGNVYHLA :::::::: ...:::::.:.::::.::: :.::.:.::::.:...::::::.::.:::: XP_011 ECSVCRTSLRQQNSCYIKNKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLA 130 140 150 160 170 180 170 180 190 200 210 220 pF1KB7 CFACFSCKRQLSTGEEFALVEEKVLCRVHYDCMLDNLKREVENGNGISVEGALLTEQDVN :::::::::::::::::.:::::::::.::: :..:::: .:::::...:::. .::: . XP_011 CFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTMIENLKRAAENGNGLTLEGAVPSEQD-S 190 200 210 220 230 240 230 240 250 260 270 280 pF1KB7 HPKPAKRARTSFTADQLQVMQAQFAQDNNPDAQTLQKLAERTGLSRRVIQVWFQNCRARH .:::::::::::::.::::::::::::::::::::::::. ::::::::::::::::::: XP_011 QPKPAKRARTSFTAEQLQVMQAQFAQDNNPDAQTLQKLADMTGLSRRVIQVWFQNCRARH 250 260 270 280 290 300 290 300 310 320 330 340 pF1KB7 KKHVSPNHSSSTPVTAAPPSRLSPPMLEEMAYSAYVPQDGTMLTALHSYMDAHSPTTLGL ::: .:.: .: ..:::::: . ... :. . . . ...::.:..... :. XP_011 KKH-TPQHP--VPPSGAPPSRLPSALSDDIHYTPFSSPERARMVTLHGYIETNARLLAGM 310 320 330 340 350 360 350 pF1KB7 QPLLPHSMTQLPISHT : . :: XP_011 CDWCGHLIWQLQRIIPPQSLHYGAANNTADKAWMSPRASLQVIITFR 370 380 390 400 >>NP_001229263 (OMIM: 608215) LIM/homeobox protein Lhx6 (363 aa) initn: 1337 init1: 881 opt: 1366 Z-score: 1008.1 bits: 195.1 E(85289): 2e-49 Smith-Waterman score: 1366; 61.9% identity (82.0% similar) in 323 aa overlap (15-333:8-324) 10 20 30 40 50 pF1KB7 MQILSRCQGLMSEECGRTTALAAGRTRKGAGEEGLVSPEGAGDEDSCSSSAPLSPSS--- : :: : . . .. . :: :.: ..: : .::. NP_001 MAQPGSGCKATTRCLEGTAPPAMAQSDAEALAGALDKDEGQAS-PCTPSTPSV 10 20 30 40 50 60 70 80 90 100 110 pF1KB7 -SPRSMASGSGCPPGKCVCNSCGLEIVDKYLLKVNDLCWHVRCLSCSVCRTSLGRHTSCY :: : :: : :: .:.::::::.:.::::::.: :::::: :::::::: ...::: NP_001 CSPPSAAS-SVPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNSCY 60 70 80 90 100 110 120 130 140 150 160 170 pF1KB7 IKDKDIFCKLDYFRRYGTRCSRCGRHIHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEE ::.:.::::.::: :.::.:.::::.:...::::::.::.:::::::::::::::::::: NP_001 IKNKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEE 120 130 140 150 160 170 180 190 200 210 220 230 pF1KB7 FALVEEKVLCRVHYDCMLDNLKREVENGNGISVEGALLTEQDVNHPKPAKRARTSFTADQ :.:::::::::.::: :..:::: .:::::...:::. .::: ..:::::::::::::.: NP_001 FGLVEEKVLCRIHYDTMIENLKRAAENGNGLTLEGAVPSEQD-SQPKPAKRARTSFTAEQ 180 190 200 210 220 230 240 250 260 270 280 290 pF1KB7 LQVMQAQFAQDNNPDAQTLQKLAERTGLSRRVIQVWFQNCRARHKKHVSPNHSSSTPVTA :::::::::::::::::::::::. :::::::::::::::::::::: .:.: .: .. NP_001 LQVMQAQFAQDNNPDAQTLQKLADMTGLSRRVIQVWFQNCRARHKKH-TPQH--PVPPSG 240 250 260 270 280 300 310 320 330 340 350 pF1KB7 APPSRLSPPMLEEMAYSAYVPQDGTMLTALHSYMDAHSPTTLGLQPLLPHSMTQLPISHT :::::: . ... :. . . . ...::.:.... NP_001 APPSRLPSALSDDIHYTPFSSPERARMVTLHGYIESQVQCGQVHCRLPYTAPPVHLKADM 290 300 310 320 330 340 NP_001 DGPLSNRGEKVILFQY 350 360 >>NP_055183 (OMIM: 608215) LIM/homeobox protein Lhx6 iso (392 aa) initn: 1337 init1: 881 opt: 1366 Z-score: 1007.9 bits: 195.2 E(85289): 2.1e-49 Smith-Waterman score: 1366; 61.9% identity (82.0% similar) in 323 aa overlap (15-333:37-353) 10 20 30 40 pF1KB7 MQILSRCQGLMSEECGRTTALAAGRTRKGAGEEGLVSPEGAGDE : :: : . . .. . :: :. NP_055 NAAPALPEGCRLPAEGGPATDQVMAQPGSGCKATTRCLEGTAPPAMAQSDAEALAGALDK 10 20 30 40 50 60 50 60 70 80 90 100 pF1KB7 DSCSSSAPLSPSS----SPRSMASGSGCPPGKCVCNSCGLEIVDKYLLKVNDLCWHVRCL : ..: : .::. :: : :: : :: .:.::::::.:.::::::.: :::::: NP_055 DEGQAS-PCTPSTPSVCSPPSAAS-SVPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCL 70 80 90 100 110 120 110 120 130 140 150 160 pF1KB7 SCSVCRTSLGRHTSCYIKDKDIFCKLDYFRRYGTRCSRCGRHIHSTDWVRRAKGNVYHLA :::::::: ...:::::.:.::::.::: :.::.:.::::.:...::::::.::.:::: NP_055 ECSVCRTSLRQQNSCYIKNKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLA 130 140 150 160 170 180 170 180 190 200 210 220 pF1KB7 CFACFSCKRQLSTGEEFALVEEKVLCRVHYDCMLDNLKREVENGNGISVEGALLTEQDVN :::::::::::::::::.:::::::::.::: :..:::: .:::::...:::. .::: . NP_055 CFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTMIENLKRAAENGNGLTLEGAVPSEQD-S 190 200 210 220 230 240 230 240 250 260 270 280 pF1KB7 HPKPAKRARTSFTADQLQVMQAQFAQDNNPDAQTLQKLAERTGLSRRVIQVWFQNCRARH .:::::::::::::.::::::::::::::::::::::::. ::::::::::::::::::: NP_055 QPKPAKRARTSFTAEQLQVMQAQFAQDNNPDAQTLQKLADMTGLSRRVIQVWFQNCRARH 250 260 270 280 290 300 290 300 310 320 330 340 pF1KB7 KKHVSPNHSSSTPVTAAPPSRLSPPMLEEMAYSAYVPQDGTMLTALHSYMDAHSPTTLGL ::: .:.: .: ..:::::: . ... :. . . . ...::.:.... NP_055 KKH-TPQH--PVPPSGAPPSRLPSALSDDIHYTPFSSPERARMVTLHGYIESQVQCGQVH 310 320 330 340 350 360 350 pF1KB7 QPLLPHSMTQLPISHT NP_055 CRLPYTAPPVHLKADMDGPLSNRGEKVILFQY 370 380 390 356 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 04:39:43 2016 done: Sun Nov 6 04:39:44 2016 Total Scan time: 8.920 Total Display time: 0.030 Function used was FASTA [36.3.4 Apr, 2011]