Result of FASTA (ccds) for
pFN21AB7606
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7606, 356 aa
1>>>pF1KB7606 356 - 356 aa - 356 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.0179+/-0.000809; mu= 17.2629+/- 0.050
mean_var=185.3876+/-40.918, 0's: 0 Z-trim(114.1): 158 B-trim: 553 in 1/51
Lambda= 0.094196
statistics sampled from 14509 (14698) to 14509 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.785), E-opt: 0.2 (0.451), width: 16
Scan time: 2.390
The best scores are: opt bits E(32554)
CCDS30756.1 LHX8 gene_id:431707|Hs108|chr1 ( 356) 2471 347.6 9.6e-96
CCDS58008.1 LHX8 gene_id:431707|Hs108|chr1 ( 346) 2402 338.2 6.3e-93
CCDS56584.1 LHX6 gene_id:26468|Hs108|chr9 ( 366) 1412 203.7 2.1e-52
CCDS6837.2 LHX6 gene_id:26468|Hs108|chr9 ( 377) 1412 203.7 2.1e-52
CCDS56583.1 LHX6 gene_id:26468|Hs108|chr9 ( 363) 1366 197.4 1.6e-50
CCDS6838.2 LHX6 gene_id:26468|Hs108|chr9 ( 392) 1366 197.5 1.6e-50
CCDS59144.1 LHX6 gene_id:26468|Hs108|chr9 ( 176) 591 91.7 5.2e-19
CCDS6994.1 LHX3 gene_id:8022|Hs108|chr9 ( 397) 450 73.0 4.9e-13
CCDS6995.1 LHX3 gene_id:8022|Hs108|chr9 ( 402) 450 73.0 4.9e-13
CCDS1338.1 LHX4 gene_id:89884|Hs108|chr1 ( 390) 438 71.4 1.5e-12
CCDS10290.1 ISL2 gene_id:64843|Hs108|chr15 ( 359) 426 69.7 4.4e-12
CCDS43314.1 ISL1 gene_id:3670|Hs108|chr5 ( 349) 425 69.5 4.8e-12
CCDS6866.2 LMX1B gene_id:4010|Hs108|chr9 ( 395) 425 69.6 5.1e-12
CCDS55342.1 LMX1B gene_id:4010|Hs108|chr9 ( 402) 425 69.6 5.2e-12
CCDS55343.1 LMX1B gene_id:4010|Hs108|chr9 ( 406) 425 69.6 5.2e-12
CCDS9171.1 LHX5 gene_id:64211|Hs108|chr12 ( 402) 412 67.8 1.8e-11
CCDS11316.1 LHX1 gene_id:3975|Hs108|chr17 ( 406) 405 66.9 3.4e-11
CCDS1247.1 LMX1A gene_id:4009|Hs108|chr1 ( 382) 402 66.5 4.4e-11
>>CCDS30756.1 LHX8 gene_id:431707|Hs108|chr1 (356 aa)
initn: 2471 init1: 2471 opt: 2471 Z-score: 1832.4 bits: 347.6 E(32554): 9.6e-96
Smith-Waterman score: 2471; 99.7% identity (100.0% similar) in 356 aa overlap (1-356:1-356)
10 20 30 40 50 60
pF1KB7 MQILSRCQGLMSEECGRTTALAAGRTRKGAGEEGLVSPEGAGDEDSCSSSAPLSPSSSPR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 MQILSRCQGLMSEECGRTTALAAGRTRKGAGEEGLVSPEGAGDEDSCSSSAPLSPSSSPR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 SMASGSGCPPGKCVCNSCGLEIVDKYLLKVNDLCWHVRCLSCSVCRTSLGRHTSCYIKDK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 SMASGSGCPPGKCVCNSCGLEIVDKYLLKVNDLCWHVRCLSCSVCRTSLGRHTSCYIKDK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 DIFCKLDYFRRYGTRCSRCGRHIHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 DIFCKLDYFRRYGTRCSRCGRHIHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 EEKVLCRVHYDCMLDNLKREVENGNGISVEGALLTEQDVNHPKPAKRARTSFTADQLQVM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 EEKVLCRVHYDCMLDNLKREVENGNGISVEGALLTEQDVNHPKPAKRARTSFTADQLQVM
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 QAQFAQDNNPDAQTLQKLAERTGLSRRVIQVWFQNCRARHKKHVSPNHSSSTPVTAAPPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::.:::
CCDS30 QAQFAQDNNPDAQTLQKLAERTGLSRRVIQVWFQNCRARHKKHVSPNHSSSTPVTAVPPS
250 260 270 280 290 300
310 320 330 340 350
pF1KB7 RLSPPMLEEMAYSAYVPQDGTMLTALHSYMDAHSPTTLGLQPLLPHSMTQLPISHT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 RLSPPMLEEMAYSAYVPQDGTMLTALHSYMDAHSPTTLGLQPLLPHSMTQLPISHT
310 320 330 340 350
>>CCDS58008.1 LHX8 gene_id:431707|Hs108|chr1 (346 aa)
initn: 2402 init1: 2402 opt: 2402 Z-score: 1781.8 bits: 338.2 E(32554): 6.3e-93
Smith-Waterman score: 2402; 99.7% identity (100.0% similar) in 346 aa overlap (11-356:1-346)
10 20 30 40 50 60
pF1KB7 MQILSRCQGLMSEECGRTTALAAGRTRKGAGEEGLVSPEGAGDEDSCSSSAPLSPSSSPR
::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 MSEECGRTTALAAGRTRKGAGEEGLVSPEGAGDEDSCSSSAPLSPSSSPR
10 20 30 40 50
70 80 90 100 110 120
pF1KB7 SMASGSGCPPGKCVCNSCGLEIVDKYLLKVNDLCWHVRCLSCSVCRTSLGRHTSCYIKDK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 SMASGSGCPPGKCVCNSCGLEIVDKYLLKVNDLCWHVRCLSCSVCRTSLGRHTSCYIKDK
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB7 DIFCKLDYFRRYGTRCSRCGRHIHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 DIFCKLDYFRRYGTRCSRCGRHIHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALV
120 130 140 150 160 170
190 200 210 220 230 240
pF1KB7 EEKVLCRVHYDCMLDNLKREVENGNGISVEGALLTEQDVNHPKPAKRARTSFTADQLQVM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 EEKVLCRVHYDCMLDNLKREVENGNGISVEGALLTEQDVNHPKPAKRARTSFTADQLQVM
180 190 200 210 220 230
250 260 270 280 290 300
pF1KB7 QAQFAQDNNPDAQTLQKLAERTGLSRRVIQVWFQNCRARHKKHVSPNHSSSTPVTAAPPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::.:::
CCDS58 QAQFAQDNNPDAQTLQKLAERTGLSRRVIQVWFQNCRARHKKHVSPNHSSSTPVTAVPPS
240 250 260 270 280 290
310 320 330 340 350
pF1KB7 RLSPPMLEEMAYSAYVPQDGTMLTALHSYMDAHSPTTLGLQPLLPHSMTQLPISHT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 RLSPPMLEEMAYSAYVPQDGTMLTALHSYMDAHSPTTLGLQPLLPHSMTQLPISHT
300 310 320 330 340
>>CCDS56584.1 LHX6 gene_id:26468|Hs108|chr9 (366 aa)
initn: 1381 init1: 881 opt: 1412 Z-score: 1054.5 bits: 203.7 E(32554): 2.1e-52
Smith-Waterman score: 1412; 60.8% identity (80.4% similar) in 347 aa overlap (15-354:26-365)
10 20 30 40
pF1KB7 MQILSRCQGLMSEECGRTTALAAGRTRKGAGEEGLVSPEGAGDEDSCSS
: :: : . . .. . :: :.: ..
CCDS56 MRRGLCRRSAENPDAGPVMAQPGSGCKATTRCLEGTAPPAMAQSDAEALAGALDKDEGQA
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB7 SAPLSPSS----SPRSMASGSGCPPGKCVCNSCGLEIVDKYLLKVNDLCWHVRCLSCSVC
: : .::. :: : :: : :: .:.::::::.:.::::::.: :::::: ::::
CCDS56 S-PCTPSTPSVCSPPSAAS-SVPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVC
70 80 90 100 110
110 120 130 140 150 160
pF1KB7 RTSLGRHTSCYIKDKDIFCKLDYFRRYGTRCSRCGRHIHSTDWVRRAKGNVYHLACFACF
:::: ...:::::.:.::::.::: :.::.:.::::.:...::::::.::.:::::::::
CCDS56 RTSLRQQNSCYIKNKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACF
120 130 140 150 160 170
170 180 190 200 210 220
pF1KB7 SCKRQLSTGEEFALVEEKVLCRVHYDCMLDNLKREVENGNGISVEGALLTEQDVNHPKPA
::::::::::::.:::::::::.::: :..:::: .:::::...:::. .::: ..::::
CCDS56 SCKRQLSTGEEFGLVEEKVLCRIHYDTMIENLKRAAENGNGLTLEGAVPSEQD-SQPKPA
180 190 200 210 220 230
230 240 250 260 270 280
pF1KB7 KRARTSFTADQLQVMQAQFAQDNNPDAQTLQKLAERTGLSRRVIQVWFQNCRARHKKHVS
:::::::::.::::::::::::::::::::::::. :::::::::::::::::::::: .
CCDS56 KRARTSFTAEQLQVMQAQFAQDNNPDAQTLQKLADMTGLSRRVIQVWFQNCRARHKKH-T
240 250 260 270 280 290
290 300 310 320 330 340
pF1KB7 PNHSSSTPVTAAPPSRLSPPMLEEMAYSAYVPQDGTMLTALHSYMDAHSPTTLGLQPLLP
:.: .: ..:::::: . ... :. . . . ...::.:...: ..: : : ::
CCDS56 PQH--PVPPSGAPPSRLPSALSDDIHYTPFSSPERARMVTLHGYIESHPFSVLTL-PALP
300 310 320 330 340 350
350
pF1KB7 H---SMTQLPISHT
: . :::.:
CCDS56 HLPVGAPQLPLSR
360
>>CCDS6837.2 LHX6 gene_id:26468|Hs108|chr9 (377 aa)
initn: 1381 init1: 881 opt: 1412 Z-score: 1054.3 bits: 203.7 E(32554): 2.1e-52
Smith-Waterman score: 1412; 60.8% identity (80.4% similar) in 347 aa overlap (15-354:37-376)
10 20 30 40
pF1KB7 MQILSRCQGLMSEECGRTTALAAGRTRKGAGEEGLVSPEGAGDE
: :: : . . .. . :: :.
CCDS68 NAAPALPEGCRLPAEGGPATDQVMAQPGSGCKATTRCLEGTAPPAMAQSDAEALAGALDK
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB7 DSCSSSAPLSPSS----SPRSMASGSGCPPGKCVCNSCGLEIVDKYLLKVNDLCWHVRCL
: ..: : .::. :: : :: : :: .:.::::::.:.::::::.: ::::::
CCDS68 DEGQAS-PCTPSTPSVCSPPSAAS-SVPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCL
70 80 90 100 110 120
110 120 130 140 150 160
pF1KB7 SCSVCRTSLGRHTSCYIKDKDIFCKLDYFRRYGTRCSRCGRHIHSTDWVRRAKGNVYHLA
:::::::: ...:::::.:.::::.::: :.::.:.::::.:...::::::.::.::::
CCDS68 ECSVCRTSLRQQNSCYIKNKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLA
130 140 150 160 170 180
170 180 190 200 210 220
pF1KB7 CFACFSCKRQLSTGEEFALVEEKVLCRVHYDCMLDNLKREVENGNGISVEGALLTEQDVN
:::::::::::::::::.:::::::::.::: :..:::: .:::::...:::. .::: .
CCDS68 CFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTMIENLKRAAENGNGLTLEGAVPSEQD-S
190 200 210 220 230 240
230 240 250 260 270 280
pF1KB7 HPKPAKRARTSFTADQLQVMQAQFAQDNNPDAQTLQKLAERTGLSRRVIQVWFQNCRARH
.:::::::::::::.::::::::::::::::::::::::. :::::::::::::::::::
CCDS68 QPKPAKRARTSFTAEQLQVMQAQFAQDNNPDAQTLQKLADMTGLSRRVIQVWFQNCRARH
250 260 270 280 290 300
290 300 310 320 330 340
pF1KB7 KKHVSPNHSSSTPVTAAPPSRLSPPMLEEMAYSAYVPQDGTMLTALHSYMDAHSPTTLGL
::: .:.: .: ..:::::: . ... :. . . . ...::.:...: ..: :
CCDS68 KKH-TPQH--PVPPSGAPPSRLPSALSDDIHYTPFSSPERARMVTLHGYIESHPFSVLTL
310 320 330 340 350 360
350
pF1KB7 QPLLPH---SMTQLPISHT
: ::: . :::.:
CCDS68 -PALPHLPVGAPQLPLSR
370
>>CCDS56583.1 LHX6 gene_id:26468|Hs108|chr9 (363 aa)
initn: 1337 init1: 881 opt: 1366 Z-score: 1020.7 bits: 197.4 E(32554): 1.6e-50
Smith-Waterman score: 1366; 61.9% identity (82.0% similar) in 323 aa overlap (15-333:8-324)
10 20 30 40 50
pF1KB7 MQILSRCQGLMSEECGRTTALAAGRTRKGAGEEGLVSPEGAGDEDSCSSSAPLSPSS---
: :: : . . .. . :: :.: ..: : .::.
CCDS56 MAQPGSGCKATTRCLEGTAPPAMAQSDAEALAGALDKDEGQAS-PCTPSTPSV
10 20 30 40 50
60 70 80 90 100 110
pF1KB7 -SPRSMASGSGCPPGKCVCNSCGLEIVDKYLLKVNDLCWHVRCLSCSVCRTSLGRHTSCY
:: : :: : :: .:.::::::.:.::::::.: :::::: :::::::: ...:::
CCDS56 CSPPSAAS-SVPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNSCY
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB7 IKDKDIFCKLDYFRRYGTRCSRCGRHIHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEE
::.:.::::.::: :.::.:.::::.:...::::::.::.::::::::::::::::::::
CCDS56 IKNKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEE
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB7 FALVEEKVLCRVHYDCMLDNLKREVENGNGISVEGALLTEQDVNHPKPAKRARTSFTADQ
:.:::::::::.::: :..:::: .:::::...:::. .::: ..:::::::::::::.:
CCDS56 FGLVEEKVLCRIHYDTMIENLKRAAENGNGLTLEGAVPSEQD-SQPKPAKRARTSFTAEQ
180 190 200 210 220 230
240 250 260 270 280 290
pF1KB7 LQVMQAQFAQDNNPDAQTLQKLAERTGLSRRVIQVWFQNCRARHKKHVSPNHSSSTPVTA
:::::::::::::::::::::::. :::::::::::::::::::::: .:.: .: ..
CCDS56 LQVMQAQFAQDNNPDAQTLQKLADMTGLSRRVIQVWFQNCRARHKKH-TPQH--PVPPSG
240 250 260 270 280
300 310 320 330 340 350
pF1KB7 APPSRLSPPMLEEMAYSAYVPQDGTMLTALHSYMDAHSPTTLGLQPLLPHSMTQLPISHT
:::::: . ... :. . . . ...::.:....
CCDS56 APPSRLPSALSDDIHYTPFSSPERARMVTLHGYIESQVQCGQVHCRLPYTAPPVHLKADM
290 300 310 320 330 340
CCDS56 DGPLSNRGEKVILFQY
350 360
>>CCDS6838.2 LHX6 gene_id:26468|Hs108|chr9 (392 aa)
initn: 1337 init1: 881 opt: 1366 Z-score: 1020.4 bits: 197.5 E(32554): 1.6e-50
Smith-Waterman score: 1366; 61.9% identity (82.0% similar) in 323 aa overlap (15-333:37-353)
10 20 30 40
pF1KB7 MQILSRCQGLMSEECGRTTALAAGRTRKGAGEEGLVSPEGAGDE
: :: : . . .. . :: :.
CCDS68 NAAPALPEGCRLPAEGGPATDQVMAQPGSGCKATTRCLEGTAPPAMAQSDAEALAGALDK
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB7 DSCSSSAPLSPSS----SPRSMASGSGCPPGKCVCNSCGLEIVDKYLLKVNDLCWHVRCL
: ..: : .::. :: : :: : :: .:.::::::.:.::::::.: ::::::
CCDS68 DEGQAS-PCTPSTPSVCSPPSAAS-SVPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCL
70 80 90 100 110 120
110 120 130 140 150 160
pF1KB7 SCSVCRTSLGRHTSCYIKDKDIFCKLDYFRRYGTRCSRCGRHIHSTDWVRRAKGNVYHLA
:::::::: ...:::::.:.::::.::: :.::.:.::::.:...::::::.::.::::
CCDS68 ECSVCRTSLRQQNSCYIKNKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLA
130 140 150 160 170 180
170 180 190 200 210 220
pF1KB7 CFACFSCKRQLSTGEEFALVEEKVLCRVHYDCMLDNLKREVENGNGISVEGALLTEQDVN
:::::::::::::::::.:::::::::.::: :..:::: .:::::...:::. .::: .
CCDS68 CFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTMIENLKRAAENGNGLTLEGAVPSEQD-S
190 200 210 220 230 240
230 240 250 260 270 280
pF1KB7 HPKPAKRARTSFTADQLQVMQAQFAQDNNPDAQTLQKLAERTGLSRRVIQVWFQNCRARH
.:::::::::::::.::::::::::::::::::::::::. :::::::::::::::::::
CCDS68 QPKPAKRARTSFTAEQLQVMQAQFAQDNNPDAQTLQKLADMTGLSRRVIQVWFQNCRARH
250 260 270 280 290 300
290 300 310 320 330 340
pF1KB7 KKHVSPNHSSSTPVTAAPPSRLSPPMLEEMAYSAYVPQDGTMLTALHSYMDAHSPTTLGL
::: .:.: .: ..:::::: . ... :. . . . ...::.:....
CCDS68 KKH-TPQH--PVPPSGAPPSRLPSALSDDIHYTPFSSPERARMVTLHGYIESQVQCGQVH
310 320 330 340 350 360
350
pF1KB7 QPLLPHSMTQLPISHT
CCDS68 CRLPYTAPPVHLKADMDGPLSNRGEKVILFQY
370 380 390
>>CCDS59144.1 LHX6 gene_id:26468|Hs108|chr9 (176 aa)
initn: 571 init1: 403 opt: 591 Z-score: 454.7 bits: 91.7 E(32554): 5.2e-19
Smith-Waterman score: 591; 64.1% identity (85.9% similar) in 142 aa overlap (193-333:1-137)
170 180 190 200 210 220
pF1KB7 ACFSCKRQLSTGEEFALVEEKVLCRVHYDCMLDNLKREVENGNGISVEGALLTEQDVNHP
:..:::: .:::::...:::. .::: ..:
CCDS59 MIENLKRAAENGNGLTLEGAVPSEQD-SQP
10 20
230 240 250 260 270 280
pF1KB7 KPAKRARTSFTADQLQVMQAQFAQDNNPDAQTLQKLAERTGLSRRVIQVWFQNCRARHKK
::::::::::::.::::::::::::::::::::::::. :::::::::::::::::::::
CCDS59 KPAKRARTSFTAEQLQVMQAQFAQDNNPDAQTLQKLADMTGLSRRVIQVWFQNCRARHKK
30 40 50 60 70 80
290 300 310 320 330 340
pF1KB7 HVSPNHSSSTPVTAAPPSRLSPPMLEEMAYSAYV-PQDGTMLTALHSYMDAHSPTTLGLQ
: .:.: .: ..:::::: . ... :. . :. . :.: ::.:....
CCDS59 H-TPQH--PVPPSGAPPSRLPSALSDDIHYTPFSSPERARMVT-LHGYIESQVQCGQVHC
90 100 110 120 130 140
350
pF1KB7 PLLPHSMTQLPISHT
CCDS59 RLPYTAPPVHLKADMDGPLSNRGEKVILFQY
150 160 170
>>CCDS6994.1 LHX3 gene_id:8022|Hs108|chr9 (397 aa)
initn: 486 init1: 252 opt: 450 Z-score: 347.6 bits: 73.0 E(32554): 4.9e-13
Smith-Waterman score: 535; 38.6% identity (67.1% similar) in 210 aa overlap (74-282:30-214)
50 60 70 80 90 100
pF1KB7 EDSCSSSAPLSPSSSPRSMASGSGCPPGKCVCNSCGLEIVDKYLLKVNDLCWHVRCLSCS
.: .: .:.:...::. : :: .::.::
CCDS69 MLLETGLERDRARPGAAAVCTLGGTREIPLCAGCDQHILDRFILKALDRHWHSKCLKCS
10 20 30 40 50
110 120 130 140 150 160
pF1KB7 VCRTSLGRHTSCYIKDKDIFCKLDYFRRYGTRCSRCGRHIHSTDWVRRAKGNVYHLACFA
:.: :... :. . ....:: :.:.:.::.:. : : :. ::::. :::: :::
CCDS69 DCHTPLAER--CFSRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLHCFA
60 70 80 90 100 110
170 180 190 200 210 220
pF1KB7 CFSCKRQLSTGEEFALVEE-KVLCRVHYDCMLDNLKREVENGNGISVEGALLTEQDVNHP
: :::::.::.:: :.:. ...:.. :. .::.:
CCDS69 CVVCKRQLATGDEFYLMEDSRLVCKADYETA---KQREAEA-------------------
120 130 140 150
230 240 250 260 270 280
pF1KB7 KPAKRARTSFTADQLQVMQAQFAQDNNPDAQTLQKLAERTGLSRRVIQVWFQNCRARHKK
::: ::..:: ::..... . . .: .. ..:. .:::. ::.:::::: ::..:.
CCDS69 -TAKRPRTTITAKQLETLKSAYNTSPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKR
160 170 180 190 200 210
290 300 310 320 330 340
pF1KB7 HVSPNHSSSTPVTAAPPSRLSPPMLEEMAYSAYVPQDGTMLTALHSYMDAHSPTTLGLQP
CCDS69 LKKDAGRQRWGQYFRNMKRSRGGSKSDKDSVQEGQDSDAEVSFPDEPSLAEMGPANGLYG
220 230 240 250 260 270
>>CCDS6995.1 LHX3 gene_id:8022|Hs108|chr9 (402 aa)
initn: 486 init1: 252 opt: 450 Z-score: 347.5 bits: 73.0 E(32554): 4.9e-13
Smith-Waterman score: 535; 38.6% identity (67.1% similar) in 210 aa overlap (74-282:35-219)
50 60 70 80 90 100
pF1KB7 EDSCSSSAPLSPSSSPRSMASGSGCPPGKCVCNSCGLEIVDKYLLKVNDLCWHVRCLSCS
.: .: .:.:...::. : :: .::.::
CCDS69 GELGPARESAGGDLLLALLARRADLRREIPLCAGCDQHILDRFILKALDRHWHSKCLKCS
10 20 30 40 50 60
110 120 130 140 150 160
pF1KB7 VCRTSLGRHTSCYIKDKDIFCKLDYFRRYGTRCSRCGRHIHSTDWVRRAKGNVYHLACFA
:.: :... :. . ....:: :.:.:.::.:. : : :. ::::. :::: :::
CCDS69 DCHTPLAER--CFSRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLHCFA
70 80 90 100 110 120
170 180 190 200 210 220
pF1KB7 CFSCKRQLSTGEEFALVEE-KVLCRVHYDCMLDNLKREVENGNGISVEGALLTEQDVNHP
: :::::.::.:: :.:. ...:.. :. .::.:
CCDS69 CVVCKRQLATGDEFYLMEDSRLVCKADYETA---KQREAEA-------------------
130 140 150 160
230 240 250 260 270 280
pF1KB7 KPAKRARTSFTADQLQVMQAQFAQDNNPDAQTLQKLAERTGLSRRVIQVWFQNCRARHKK
::: ::..:: ::..... . . .: .. ..:. .:::. ::.:::::: ::..:.
CCDS69 -TAKRPRTTITAKQLETLKSAYNTSPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKR
170 180 190 200 210
290 300 310 320 330 340
pF1KB7 HVSPNHSSSTPVTAAPPSRLSPPMLEEMAYSAYVPQDGTMLTALHSYMDAHSPTTLGLQP
CCDS69 LKKDAGRQRWGQYFRNMKRSRGGSKSDKDSVQEGQDSDAEVSFPDEPSLAEMGPANGLYG
220 230 240 250 260 270
>>CCDS1338.1 LHX4 gene_id:89884|Hs108|chr1 (390 aa)
initn: 513 init1: 267 opt: 438 Z-score: 338.8 bits: 71.4 E(32554): 1.5e-12
Smith-Waterman score: 518; 37.8% identity (66.0% similar) in 209 aa overlap (75-282:30-214)
50 60 70 80 90 100
pF1KB7 DSCSSSAPLSPSSSPRSMASGSGCPPGKCVCNSCGLEIVDKYLLKVNDLCWHVRCLSCSV
: .:. .:.::..::: : :: ::.:.
CCDS13 MMQSATVPAEGAVKGLPEMLGVPMQQIPQCAGCNQHILDKFILKVLDRHWHSSCLKCAD
10 20 30 40 50
110 120 130 140 150 160
pF1KB7 CRTSLGRHTSCYIKDKDIFCKLDYFRRYGTRCSRCGRHIHSTDWVRRAKGNVYHLACFAC
:. .:. :. . ...:: :.:.:.::.:. : . : :. ::.:. :::: ::::
CCDS13 CQMQLA--DRCFSRAGSVYCKEDFFKRFGTKCTACQQGIPPTQVVRKAQDFVYHLHCFAC
60 70 80 90 100 110
170 180 190 200 210 220
pF1KB7 FSCKRQLSTGEEFALVEE-KVLCRVHYDCMLDNLKREVENGNGISVEGALLTEQDVNHPK
. :.:::.::.:: :.:. ...:. :. .: . : :
CCDS13 IICNRQLATGDEFYLMEDGRLVCKEDYETAKQN--DDSEAG-------------------
120 130 140 150
230 240 250 260 270 280
pF1KB7 PAKRARTSFTADQLQVMQAQFAQDNNPDAQTLQKLAERTGLSRRVIQVWFQNCRARHKKH
::: ::..:: ::.... . .. .: .. ..:. .:::. ::.:::::: ::..:.
CCDS13 -AKRPRTTITAKQLETLKNAYKNSPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRL
160 170 180 190 200 210
290 300 310 320 330 340
pF1KB7 VSPNHSSSTPVTAAPPSRLSPPMLEEMAYSAYVPQDGTMLTALHSYMDAHSPTTLGLQPL
CCDS13 KKDAGRHRWGQFYKSVKRSRGSSKQEKESSAEDCGVSDSELSFREDQILSELGHTNRIYG
220 230 240 250 260 270
356 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 04:39:42 2016 done: Sun Nov 6 04:39:43 2016
Total Scan time: 2.390 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]