Result of FASTA (ccds) for
pFN21AE3895
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3895, 123 aa
1>>>pF1KE3895 123 - 123 aa - 123 aa
Library: human.CCDS.faa
18921897 residues in 33420 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.7000+/-0.000528; mu= 13.5384+/- 0.032
mean_var=53.0945+/-10.472, 0's: 0 Z-trim(111.8): 11 B-trim: 0 in 0/52
Lambda= 0.176015
statistics sampled from 12846 (12856) to 12846 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.779), E-opt: 0.2 (0.385), width: 16
Scan time: 0.820
The best scores are: opt bits E(33420)
CCDS30654.1 THEMIS2 gene_id:9473|Hs109|chr1 ( 123) 830 217.7 1.5e-57
CCDS30653.1 THEMIS2 gene_id:9473|Hs109|chr1 ( 260) 526 140.7 4.8e-34
CCDS65461.1 THEMIS2 gene_id:9473|Hs109|chr1 ( 514) 526 140.8 8.5e-34
CCDS41290.1 THEMIS2 gene_id:9473|Hs109|chr1 ( 643) 526 140.9 1e-33
CCDS34534.1 THEMIS gene_id:387357|Hs109|chr6 ( 641) 258 72.8 3.1e-13
CCDS55056.1 THEMIS gene_id:387357|Hs109|chr6 ( 680) 258 72.9 3.3e-13
>>CCDS30654.1 THEMIS2 gene_id:9473|Hs109|chr1 (123 aa)
initn: 830 init1: 830 opt: 830 Z-score: 1146.9 bits: 217.7 E(33420): 1.5e-57
Smith-Waterman score: 830; 100.0% identity (100.0% similar) in 123 aa overlap (1-123:1-123)
10 20 30 40 50 60
pF1KE3 MEPVPLQDFVRALDPASLPRVLRVCSGVYFEGSIYEISGNECCLSTGDLIKVTQVRLQKV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 MEPVPLQDFVRALDPASLPRVLRVCSGVYFEGSIYEISGNECCLSTGDLIKVTQVRLQKV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 VCENPKTSQTMELAPNFQVFSSLRIAATRSAAQTQGEDLARVHQGWLQYVQQDSCPQEGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 VCENPKTSQTMELAPNFQVFSSLRIAATRSAAQTQGEDLARVHQGWLQYVQQDSCPQEGP
70 80 90 100 110 120
pF1KE3 QAR
:::
CCDS30 QAR
>>CCDS30653.1 THEMIS2 gene_id:9473|Hs109|chr1 (260 aa)
initn: 525 init1: 525 opt: 526 Z-score: 724.9 bits: 140.7 E(33420): 4.8e-34
Smith-Waterman score: 526; 95.2% identity (96.4% similar) in 84 aa overlap (1-83:1-84)
10 20 30 40 50 60
pF1KE3 MEPVPLQDFVRALDPASLPRVLRVCSGVYFEGSIYEISGNECCLSTGDLIKVTQVRLQKV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 MEPVPLQDFVRALDPASLPRVLRVCSGVYFEGSIYEISGNECCLSTGDLIKVTQVRLQKV
10 20 30 40 50 60
70 80 90 100 110
pF1KE3 VCENPKTSQTMELAPNFQ-VFSSLRIAATRSAAQTQGEDLARVHQGWLQYVQQDSCPQEG
:::::::::::::::::: :. :
CCDS30 VCENPKTSQTMELAPNFQGYFTPLNTPQSYETLEELVSATTQSSKQLPTCFMSTHRIVTE
70 80 90 100 110 120
>--
initn: 319 init1: 305 opt: 308 Z-score: 425.7 bits: 85.3 E(33420): 2.2e-17
Smith-Waterman score: 308; 86.5% identity (94.2% similar) in 52 aa overlap (72-123:209-260)
50 60 70 80 90 100
pF1KE3 CCLSTGDLIKVTQVRLQKVVCENPKTSQTMELAPNFQVFSSLRIAATRSAAQTQGEDLAR
:. ...::::::::::::::::::::::
CCDS30 LQVLQDPALKDLVLTCPTLPWHSLILRPQYEIQAIMHIFSSLRIAATRSAAQTQGEDLAR
180 190 200 210 220 230
110 120
pF1KE3 VHQGWLQYVQQDSCPQEGPQAR
::::::::::::::::::::::
CCDS30 VHQGWLQYVQQDSCPQEGPQAR
240 250 260
>>CCDS65461.1 THEMIS2 gene_id:9473|Hs109|chr1 (514 aa)
initn: 525 init1: 525 opt: 526 Z-score: 720.5 bits: 140.8 E(33420): 8.5e-34
Smith-Waterman score: 526; 95.2% identity (96.4% similar) in 84 aa overlap (1-83:1-84)
10 20 30 40 50 60
pF1KE3 MEPVPLQDFVRALDPASLPRVLRVCSGVYFEGSIYEISGNECCLSTGDLIKVTQVRLQKV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 MEPVPLQDFVRALDPASLPRVLRVCSGVYFEGSIYEISGNECCLSTGDLIKVTQVRLQKV
10 20 30 40 50 60
70 80 90 100 110
pF1KE3 VCENPKTSQTMELAPNFQ-VFSSLRIAATRSAAQTQGEDLARVHQGWLQYVQQDSCPQEG
:::::::::::::::::: :. :
CCDS65 VCENPKTSQTMELAPNFQGYFTPLNTPQSYETLEELVSATTQSSKQLPTCFMSTHRIVTE
70 80 90 100 110 120
>>CCDS41290.1 THEMIS2 gene_id:9473|Hs109|chr1 (643 aa)
initn: 546 init1: 525 opt: 526 Z-score: 719.0 bits: 140.9 E(33420): 1e-33
Smith-Waterman score: 526; 95.2% identity (96.4% similar) in 84 aa overlap (1-83:1-84)
10 20 30 40 50 60
pF1KE3 MEPVPLQDFVRALDPASLPRVLRVCSGVYFEGSIYEISGNECCLSTGDLIKVTQVRLQKV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 MEPVPLQDFVRALDPASLPRVLRVCSGVYFEGSIYEISGNECCLSTGDLIKVTQVRLQKV
10 20 30 40 50 60
70 80 90 100 110
pF1KE3 VCENPKTSQTMELAPNFQ-VFSSLRIAATRSAAQTQGEDLARVHQGWLQYVQQDSCPQEG
:::::::::::::::::: :. :
CCDS41 VCENPKTSQTMELAPNFQGYFTPLNTPQSYETLEELVSATTQSSKQLPTCFMSTHRIVTE
70 80 90 100 110 120
>>CCDS34534.1 THEMIS gene_id:387357|Hs109|chr6 (641 aa)
initn: 278 init1: 228 opt: 258 Z-score: 351.3 bits: 72.8 E(33420): 3.1e-13
Smith-Waterman score: 258; 40.6% identity (71.7% similar) in 106 aa overlap (6-105:5-108)
10 20 30 40 50 60
pF1KE3 MEPVPLQDFVRALDPASLPRVLRVCSGVYFEGSIYEISGNECCLSTGDLIKVTQVRLQKV
:..::..:: .:::::.. .:.:.::::::. :::::.:::..::.: ....:.
CCDS34 MALSLEEFVHSLDLRTLPRVLEIQAGIYLEGSIYEMFGNECCFSTGEVIKITGLKVKKI
10 20 30 40 50
70 80 90 100 110
pF1KE3 V---CENPK---TSQTMELAPNFQVFSSLRIAATRSAAQTQGEDLARVHQGWLQYVQQDS
. ::. . . : .:: :: . ..:.: .. :. : .: :
CCDS34 IAEICEQIEGCESLQPFELPMNFPGL--FKIVADKTPYLTMEEITRTIHIGPSRLGHPCF
60 70 80 90 100 110
120
pF1KE3 CPQEGPQAR
CCDS34 YHQKDIKLENLIIKQGEQIMLNSVEEIDGEIMVSCAVARNHQTHSFNLPLSQEGEFYECE
120 130 140 150 160 170
>>CCDS55056.1 THEMIS gene_id:387357|Hs109|chr6 (680 aa)
initn: 278 init1: 228 opt: 258 Z-score: 350.9 bits: 72.9 E(33420): 3.3e-13
Smith-Waterman score: 258; 40.6% identity (71.7% similar) in 106 aa overlap (6-105:5-108)
10 20 30 40 50 60
pF1KE3 MEPVPLQDFVRALDPASLPRVLRVCSGVYFEGSIYEISGNECCLSTGDLIKVTQVRLQKV
:..::..:: .:::::.. .:.:.::::::. :::::.:::..::.: ....:.
CCDS55 MALSLEEFVHSLDLRTLPRVLEIQAGIYLEGSIYEMFGNECCFSTGEVIKITGLKVKKI
10 20 30 40 50
70 80 90 100 110
pF1KE3 V---CENPK---TSQTMELAPNFQVFSSLRIAATRSAAQTQGEDLARVHQGWLQYVQQDS
. ::. . . : .:: :: . ..:.: .. :. : .: :
CCDS55 IAEICEQIEGCESLQPFELPMNFPGL--FKIVADKTPYLTMEEITRTIHIGPSRLGHPCF
60 70 80 90 100 110
120
pF1KE3 CPQEGPQAR
CCDS55 YHQKDIKLENLIIKQGEQIMLNSVEEIDGEIMVSCAVARNHQTHSFNLPLSQEGEFYECE
120 130 140 150 160 170
123 residues in 1 query sequences
18921897 residues in 33420 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Wed Aug 4 20:31:13 2021 done: Wed Aug 4 20:31:14 2021
Total Scan time: 0.820 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]