(Circular) (Six-base) MAPSORT of: pFN21AE2436.seq Check: 163 from: 1 to: 6949 pFN21AE2436 6949 bp With 182 enzymes: SgfI * November 22, 2012 14:34 .. AarI CACCTGCnnnn'nnnn_ Cuts at: 3436 3436 Size: 6949 AatII G_ACGT'C Cuts at: 278 331 414 600 1536 4759 278 Size: 53 83 186 936 3223 2468 Fragments arranged by size: 3223 2468 936 186 83 53 AccI GT'mk_AC Cuts at: 1937 4292 1937 Size: 2355 4594 Acc65I G'GTAC_C Cuts at: 4270 4270 Size: 6949 AclI AA'CG_TT Cuts at: 1563 5076 5449 1563 Size: 3513 373 3063 Fragments arranged by size: 3513 3063 373 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 1632 3377 3421 3742 5012 6396 6664 1632 Size: 1745 44 321 1270 1384 268 1917 Fragments arranged by size: 1917 1745 1384 1270 321 268 44 AflII C'TTAA_G Cuts at: 820 1017 820 Size: 197 6752 AflIII A'CryG_T Cuts at: 1203 2664 5848 6825 1203 Size: 1461 3184 977 1327 Fragments arranged by size: 3184 1461 1327 977 AgeI A'CCGG_T Cuts at: 2439 5780 2439 Size: 3341 3608 AhdI GACnn_n'nnGTC Cuts at: 3438 5678 3438 Size: 2240 4709 AleI CACnn'nnGTG Cuts at: 1166 1166 Size: 6949 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1184 1184 Size: 6949 AlwNI CAG_nnn'CTG Cuts at: 2419 3523 4072 4692 6264 2419 Size: 1104 549 620 1572 3104 Fragments arranged by size: 3104 1572 1104 620 549 ApaI G_GGCC'C Cuts at: 2788 3226 4095 2788 Size: 438 869 5642 Fragments arranged by size: 5642 869 438 ApaLI G'TGCA_C Cuts at: 3937 5006 6162 3937 Size: 1069 1156 4724 Fragments arranged by size: 4724 1156 1069 ApoI r'AATT_y Cuts at: 1493 4194 4258 4484 4636 6745 1493 Size: 2701 64 226 152 2109 1697 Fragments arranged by size: 2701 2109 1697 226 152 64 AseI AT'TA_AT Cuts at: 160 1032 5503 160 Size: 872 4471 1606 Fragments arranged by size: 4471 1606 872 AsiSI GCG_AT'CGC Cuts at: 2001 2001 Size: 6949 AvaI C'yCGr_G Cuts at: 1870 1943 2098 3219 4274 1870 Size: 73 155 1121 1055 4545 Fragments arranged by size: 4545 1121 1055 155 73 BaeI ACnnnnGTAyCnnnnnnn_nnnnn' Cuts at: 2428 2461 2428 Size: 33 6916 BamHI G'GATC_C Cuts at: 4279 4646 4279 Size: 367 6582 BanI G'GyrC_C Cuts at: 618 943 1160 1787 3275 3534 4007 4270 5725 Size: 325 217 627 1488 259 473 263 1455 Cuts at: 5725 618 Size: 1842 Fragments arranged by size: 1842 1488 1455 627 473 325 263 259 217 BanII G_rGCy'C Cuts at: 1391 2788 2921 3226 3320 3500 4095 4268 1391 Size: 1397 133 305 94 180 595 173 4072 Fragments arranged by size: 4072 1397 595 305 180 173 133 94 BbeI G_GCGC'C Cuts at: 3538 3538 Size: 6949 BbsI GAAGACnn'nnnn_ Cuts at: 928 1899 928 Size: 971 5978 BbvCI CC'TCA_GC Cuts at: 3806 3806 Size: 6949 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1903 1937 5140 5174 1903 Size: 34 3203 34 3678 Fragments arranged by size: 3678 3203 34 34 BciVI GTATCCnnnnn_n' Cuts at: 2732 4841 6051 2732 Size: 2109 1210 3630 Fragments arranged by size: 3630 2109 1210 BclI T'GATC_A Cuts at: 1548 1548 Size: 6949 BglI GCCn_nnn'nGGC Cuts at: 136 243 365 436 1067 1672 2630 2714 2884 Size: 107 122 71 631 605 958 84 170 Cuts at: 2884 5560 136 Size: 2676 1525 Fragments arranged by size: 2676 1525 958 631 605 170 122 107 84 71 BglII A'GATC_T Cuts at: 6944 6944 Size: 6949 BlpI GC'TnA_GC Cuts at: 4043 4366 4043 Size: 323 6626 Bme1580I G_kGCm'C Cuts at: 1790 2210 2500 2788 3226 3280 3941 4095 5010 Size: 420 290 288 438 54 661 154 915 Cuts at: 5010 6166 1790 Size: 1156 2573 Fragments arranged by size: 2573 1156 915 661 438 420 290 288 154 54 BmgBI CAC'GTC Cuts at: 1318 2557 2665 1318 Size: 1239 108 5602 Fragments arranged by size: 5602 1239 108 BmrI ACTGGGnnnn_n' Cuts at: 442 858 911 994 1393 1417 2770 4680 5638 Size: 416 53 83 399 24 1353 1910 958 Cuts at: 5638 442 Size: 1753 Fragments arranged by size: 1910 1753 1353 958 416 399 83 53 24 BmtI G_CTAG'C Cuts at: 1056 1056 Size: 6949 BplI GAGnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 2060 3115 2060 Size: 1055 5894 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 2095 2992 3281 3484 3806 3815 3859 4123 Size: 856 897 289 203 322 9 44 264 Cuts at: 4123 5609 1239 Size: 1486 2579 Fragments arranged by size: 2579 1486 897 856 322 289 264 203 44 9 Bpu10I CC'TnA_GC Cuts at: 2834 3806 2834 Size: 972 5977 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 2234 2434 5074 5939 6237 2234 Size: 200 2640 865 298 2946 Fragments arranged by size: 2946 2640 865 298 200 BsaI GGTCTCn'nnnn_ Cuts at: 882 1499 2726 3355 4081 5612 882 Size: 617 1227 629 726 1531 2219 Fragments arranged by size: 2219 1531 1227 726 629 617 BsaAI yAC'GTr Cuts at: 493 1204 2326 2743 3889 4740 493 Size: 711 1122 417 1146 851 2702 Fragments arranged by size: 2702 1146 1122 851 711 417 BsaBI GATnn'nnATC Cuts at: 3969 6943 3969 Size: 2974 3975 BsaHI Gr'CG_yC Cuts at: 275 328 411 597 1533 2467 3535 4756 5138 Size: 53 83 186 936 934 1068 1221 382 Cuts at: 5138 5773 275 Size: 635 1451 Fragments arranged by size: 1451 1221 1068 936 934 635 382 186 83 53 BsaWI w'CCGG_w Cuts at: 2439 5382 5780 6054 6201 6612 2439 Size: 2943 398 274 147 411 2776 Fragments arranged by size: 2943 2776 411 398 274 147 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 1178 1208 1373 1403 2306 2336 1178 Size: 30 165 30 903 30 5791 Fragments arranged by size: 5791 903 165 30 30 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 1186 2173 2742 3411 3812 4162 4235 1186 Size: 987 569 669 401 350 73 3900 Fragments arranged by size: 3900 987 669 569 401 350 73 BseYI C'CCAG_C Cuts at: 2051 2503 2642 2921 3026 3735 4202 6152 6648 Size: 452 139 279 105 709 467 1950 496 Cuts at: 6648 2051 Size: 2352 Fragments arranged by size: 2352 1950 709 496 467 452 279 139 105 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 1163 1736 2222 2689 1163 Size: 573 486 467 5423 Fragments arranged by size: 5423 573 486 467 BsiEI CG_ry'CG Cuts at: 1540 1815 2001 2888 4107 4399 5160 6188 1540 Size: 275 186 887 1219 292 761 1028 2301 Fragments arranged by size: 2301 1219 1028 887 761 292 275 186 BsiHKAI G_wGCw'C Cuts at: 2340 3941 4227 5010 5095 6166 2340 Size: 1601 286 783 85 1071 3123 Fragments arranged by size: 3123 1601 1071 783 286 85 BsiWI C'GTAC_G Cuts at: 2322 2322 Size: 6949 BsmI GAATG_Cn' Cuts at: 2169 2280 4460 4553 2169 Size: 111 2180 93 4565 Fragments arranged by size: 4565 2180 111 93 BsmBI CGTCTCn'nnnn_ Cuts at: 2309 2458 2309 Size: 149 6800 Bsp1286I G_dGCh'C Cuts at: 1391 1790 2210 2340 2500 2788 2921 3226 3280 Size: 399 420 130 160 288 133 305 54 Cuts at: 3280 3320 3500 3941 4095 4227 4268 5010 5095 Size: 40 180 441 154 132 41 742 85 Cuts at: 5095 6166 1391 Size: 1071 2174 Fragments arranged by size: 2174 1071 742 441 420 399 305 288 180 160 154 133 132 130 85 54 41 40 BspEI T'CCGG_A Cuts at: 6612 6612 Size: 6949 BspHI T'CATG_A Cuts at: 4838 6568 4838 Size: 1730 5219 BspMI ACCTGCnnnn'nnnn_ Cuts at: 844 2244 2708 3436 4304 844 Size: 1400 464 728 868 3489 Fragments arranged by size: 3489 1400 868 728 464 BsrBI CCG'CTC Cuts at: 1394 1823 4836 1394 Size: 429 3013 3507 Fragments arranged by size: 3507 3013 429 BsrDI GCAATG_nn' Cuts at: 65 1248 5444 5618 65 Size: 1183 4196 174 1396 Fragments arranged by size: 4196 1396 1183 174 BsrFI r'CCGG_y Cuts at: 1700 1810 2439 4227 5593 5780 1700 Size: 110 629 1788 1366 187 2869 Fragments arranged by size: 2869 1788 1366 629 187 110 BsrGI T'GTAC_A Cuts at: 96 96 Size: 6949 BssHII G'CGCG_C Cuts at: 1925 3508 1925 Size: 1583 5366 BssSI C'ACGA_G Cuts at: 4145 5009 6021 4145 Size: 864 1012 5073 Fragments arranged by size: 5073 1012 864 BstAPI GCAn_nnn'nTGC Cuts at: 794 3582 794 Size: 2788 4161 BstBI TT'CG_AA Cuts at: 5753 5753 Size: 6949 BstEII G'GTnAC_C Cuts at: 1184 2827 1184 Size: 1643 5306 BstXI CCAn_nnnn'nTGG Cuts at: 3251 3251 Size: 6949 BstYI r'GATC_y Cuts at: 1972 4279 4646 5031 5048 6500 6586 6598 6944 Size: 2307 367 385 17 1452 86 12 346 Cuts at: 6944 1972 Size: 1977 Fragments arranged by size: 2307 1977 1452 385 367 346 86 17 12 BtgI C'CryG_G Cuts at: 513 1065 2310 3250 3528 3726 4107 513 Size: 552 1245 940 278 198 381 3355 Fragments arranged by size: 3355 1245 940 552 381 278 198 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 487 1170 1226 2527 3814 487 Size: 683 56 1301 1287 3622 Fragments arranged by size: 3622 1301 1287 683 56 BtsI GCAGTG_nn' Cuts at: 2498 2820 4120 4465 5259 5279 2498 Size: 322 1300 345 794 20 4168 Fragments arranged by size: 4168 1300 794 345 322 20 ClaI AT'CG_AT Cuts at: 1554 1554 Size: 6949 CspCI CAAnnnnnGTGGnnnnnnnnnn_nn' Cuts at: 529 564 529 Size: 35 6914 DraI TTT'AAA Cuts at: 4253 4253 Size: 6949 DraIII CAC_nnn'GTG Cuts at: 2205 3936 2205 Size: 1731 5218 DrdI GACnn_nn'nnGTC Cuts at: 809 1316 2121 5956 809 Size: 507 805 3835 1802 Fragments arranged by size: 3835 1802 805 507 EaeI y'GGCC_r Cuts at: 8 62 1487 1537 1812 1830 2527 2885 2994 Size: 54 1425 50 275 18 697 358 109 Cuts at: 2994 3114 3154 3171 3375 3450 4104 4396 5285 Size: 120 40 17 204 75 654 292 889 Cuts at: 5285 6914 8 Size: 1629 43 Fragments arranged by size: 1629 1425 889 697 654 358 292 275 204 120 109 75 54 50 43 40 18 17 EagI C'GGCC_G Cuts at: 1537 1812 2885 4104 4396 1537 Size: 275 1073 1219 292 4090 Fragments arranged by size: 4090 1219 1073 292 275 EarI CTCTTCn'nnn_ Cuts at: 1353 2051 2822 2909 3353 3635 4879 1353 Size: 698 771 87 444 282 1244 3423 Fragments arranged by size: 3423 1244 771 698 444 282 87 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 387 1451 1589 2648 2766 5536 5910 6056 387 Size: 1064 138 1059 118 2770 374 146 1280 Fragments arranged by size: 2770 1280 1064 1059 374 146 138 118 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 1632 2095 2992 3281 3377 3421 3484 3742 Size: 393 463 897 289 96 44 63 258 Cuts at: 3742 3806 3815 3859 4123 5012 5609 6396 6664 Size: 64 9 44 264 889 597 787 268 Cuts at: 6664 1239 Size: 1524 Fragments arranged by size: 1524 897 889 787 597 463 393 289 268 264 258 96 64 63 44 44 9 EcoNI CCTnn'n_nnAGG Cuts at: 2957 2957 Size: 6949 EcoO109I rG'GnC_Cy Cuts at: 2079 2233 2250 2578 2784 2785 2966 3223 3404 Size: 154 17 328 206 1 181 257 181 Cuts at: 3404 3670 3679 4091 4092 2079 Size: 266 9 412 1 4936 Fragments arranged by size: 4936 412 328 266 257 206 181 181 154 17 9 1 1 EcoRI G'AATT_C Cuts at: 4258 4636 4258 Size: 378 6571 FspI TGC'GCA Cuts at: 5455 5455 Size: 6949 HaeII r_GCGC'y Cuts at: 1678 2625 3538 3572 6096 1678 Size: 947 913 34 2524 2531 Fragments arranged by size: 2531 2524 947 913 34 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 1373 1405 1540 1572 2730 2762 3424 3456 5590 Size: 32 135 32 1158 32 662 32 2134 Cuts at: 5590 5622 5664 5696 1373 Size: 32 42 32 2626 Fragments arranged by size: 2626 2134 1158 662 135 42 32 32 32 32 32 32 HincII GTy'rAC Cuts at: 669 1657 1938 3589 4293 4539 669 Size: 988 281 1651 704 246 3079 Fragments arranged by size: 3079 1651 988 704 281 246 HindIII A'AGCT_T Cuts at: 748 748 Size: 6949 HpaI GTT'AAC Cuts at: 4539 4539 Size: 6949 KasI G'GCGC_C Cuts at: 3534 3534 Size: 6949 KpnI G_GTAC'C Cuts at: 4274 4274 Size: 6949 MfeI C'AATT_G Cuts at: 4548 4548 Size: 6949 MluI A'CGCG_T Cuts at: 6825 6825 Size: 6949 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 1305 6063 6247 1305 Size: 4758 184 2007 Fragments arranged by size: 4758 2007 184 MscI TGG'CCA Cuts at: 10 64 1489 1832 3173 3377 3452 10 Size: 54 1425 343 1341 204 75 3507 Fragments arranged by size: 3507 1425 1341 343 204 75 54 MslI CAynn'nnrTG Cuts at: 518 1166 4025 4907 5266 5425 518 Size: 648 2859 882 359 159 2042 Fragments arranged by size: 2859 2042 882 648 359 159 MspA1I CmG'CkG Cuts at: 1606 2881 2932 3717 4365 5042 6190 6435 1606 Size: 1275 51 785 648 677 1148 245 2120 Fragments arranged by size: 2120 1275 1148 785 677 648 245 51 NarI GG'CG_CC Cuts at: 3535 3535 Size: 6949 NcoI C'CATG_G Cuts at: 513 1065 2310 3726 513 Size: 552 1245 1416 3736 Fragments arranged by size: 3736 1416 1245 552 NdeI CA'TA_TG Cuts at: 387 387 Size: 6949 NheI G'CTAG_C Cuts at: 1052 1052 Size: 6949 NotI GC'GGCC_GC Cuts at: 2885 4396 2885 Size: 1511 5438 NspI r_CATG'y Cuts at: 1132 1229 3562 3745 4307 5852 1132 Size: 97 2333 183 562 1545 2229 Fragments arranged by size: 2333 2229 1545 562 183 97 PasI CC'CwG_GG Cuts at: 1348 2788 1348 Size: 1440 5509 PciI A'CATG_T Cuts at: 5848 5848 Size: 6949 PflMI CCAn_nnn'nTGG Cuts at: 1108 3598 1108 Size: 2490 4459 PfoI T'CCnGG_A Cuts at: 2256 3381 3783 3875 2256 Size: 1125 402 92 5330 Fragments arranged by size: 5330 1125 402 92 PmeI GTTT'AAAC Cuts at: 4253 4253 Size: 6949 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 5018 5050 6531 6563 5018 Size: 32 1481 32 5404 Fragments arranged by size: 5404 1481 32 32 PpuMI rG'GwC_Cy Cuts at: 2079 2233 2250 3404 3670 2079 Size: 154 17 1154 266 5358 Fragments arranged by size: 5358 1154 266 154 17 PshAI GACnn'nnGTC Cuts at: 1613 2858 1613 Size: 1245 5704 PsiI TTA'TAA Cuts at: 4519 4519 Size: 6949 PspOMI G'GGCC_C Cuts at: 2784 3222 4091 2784 Size: 438 869 5642 Fragments arranged by size: 5642 869 438 PstI C_TGCA'G Cuts at: 830 2346 2415 4216 4301 830 Size: 1516 69 1801 85 3478 Fragments arranged by size: 3478 1801 1516 85 69 PvuI CG_AT'CG Cuts at: 2001 2001 Size: 6949 SalI G'TCGA_C Cuts at: 1936 4291 1936 Size: 2355 4594 SanDI GG'GwC_CC Cuts at: 3404 3670 3404 Size: 266 6683 SapI GCTCTTCn'nnn_ Cuts at: 2909 3635 2909 Size: 726 6223 SbfI CC_TGCA'GG Cuts at: 4301 4301 Size: 6949 ScaI AGT'ACT Cuts at: 4055 5197 6909 4055 Size: 1142 1712 4095 Fragments arranged by size: 4095 1712 1142 SfcI C'TryA_G Cuts at: 826 1045 2342 2368 2411 2490 4212 4297 5432 Size: 219 1297 26 43 79 1722 85 1135 Cuts at: 5432 6113 6304 826 Size: 681 191 1471 Fragments arranged by size: 1722 1471 1297 1135 681 219 191 85 79 43 26 SfiI GGCCn_nnn'nGGCC Cuts at: 2884 2884 Size: 6949 SfoI GGC'GCC Cuts at: 3536 3536 Size: 6949 SgfI GCG_AT'CGC Cuts at: 2001 2001 Size: 6949 SgrAI Cr'CCGG_yG Cuts at: 1700 1700 Size: 6949 SmaI CCC'GGG Cuts at: 1872 3221 4276 1872 Size: 1349 1055 4545 Fragments arranged by size: 4545 1349 1055 SmlI C'TyrA_G Cuts at: 820 1017 1943 2213 2449 5053 5954 6216 820 Size: 197 926 270 236 2604 901 262 1553 Fragments arranged by size: 2604 1553 926 901 270 262 236 197 SnaBI TAC'GTA Cuts at: 493 4740 493 Size: 4247 2702 SpeI A'CTAG_T Cuts at: 152 152 Size: 6949 SphI G_CATG'C Cuts at: 1132 4307 1132 Size: 3175 3774 SspI AAT'ATT Cuts at: 5 52 4873 5 Size: 47 4821 2081 Fragments arranged by size: 4821 2081 47 StuI AGG'CCT Cuts at: 1517 2694 1517 Size: 1177 5772 StyI C'CwwG_G Cuts at: 513 1065 2310 3321 3372 3564 3675 3726 4388 Size: 552 1245 1011 51 192 111 51 662 Cuts at: 4388 513 Size: 3074 Fragments arranged by size: 3074 1245 1011 662 552 192 111 51 51 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 325 1580 2414 2703 4976 4993 5146 5331 5776 Size: 1255 834 289 2273 17 153 185 445 Cuts at: 5776 325 Size: 1498 Fragments arranged by size: 2273 1498 1255 834 445 289 185 153 17 TatI w'GTAC_w Cuts at: 96 370 450 483 534 1977 3708 4053 4131 Size: 274 80 33 51 1443 1731 345 78 Cuts at: 4131 4167 5195 6907 96 Size: 36 1028 1712 138 Fragments arranged by size: 1731 1712 1443 1028 345 274 138 80 78 51 36 33 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 6909 6941 6909 Size: 32 6917 Tth111I GACn'n_nGTC Cuts at: 1316 3128 1316 Size: 1812 5137 XbaI T'CTAG_A Cuts at: 4285 4285 Size: 6949 XcmI CCAnnnn_n'nnnnTGG Cuts at: 2070 2070 Size: 6949 XhoI C'TCGA_G Cuts at: 1943 1943 Size: 6949 XmaI C'CCGG_G Cuts at: 1870 3219 4274 1870 Size: 1349 1055 4545 Fragments arranged by size: 4545 1349 1055 XmnI GAAnn'nnTTC Cuts at: 5078 5078 Size: 6949 ZraI GAC'GTC Cuts at: 276 329 412 598 1534 4757 276 Size: 53 83 186 936 3223 2468 Fragments arranged by size: 3223 2468 936 186 83 53 Enzymes that do cut: AarI AatII AccI Acc65I AclI AcuI AflII AflIII AgeI AhdI AleI AlfI AlwNI ApaI ApaLI ApoI AseI AsiSI AvaI BaeI BamHI BanI BanII BbeI BbsI BbvCI BcgI BciVI BclI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI BplI BpmI Bpu10I BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsiWI BsmI BsmBI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI BstAPI BstBI BstEII BstXI BstYI BtgI BtgZI BtsI ClaI CspCI DraI DraIII DrdI EaeI EagI EarI EciI Eco57MI EcoNI EcoO109I EcoRI FspI HaeII Hin4I HincII HindIII HpaI KasI KpnI MfeI MluI MmeI MscI MslI MspA1I NarI NcoI NdeI NheI NotI NspI PasI PciI PflMI PfoI PmeI PpiI PpuMI PshAI PsiI PspOMI PstI PvuI SalI SanDI SapI SbfI ScaI SfcI SfiI SfoI SgfI SgrAI SmaI SmlI SnaBI SpeI SphI SspI StuI StyI TaqII TatI TstI Tth111I XbaI XcmI XhoI XmaI XmnI ZraI Enzymes that do not cut: AfeI AloI AscI AvrII BfrBI BstZ17I Bsu36I EcoICRI EcoRV FalI FseI FspAI NaeI NgoMIV NruI NsiI PacI PmlI PspXI PsrI PvuII RsrII SacI SacII SexAI SrfI SwaI