FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6510, 78 aa
  1>>>pF1KE6510 78 - 78 aa - 78 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.1073+/-0.000226; mu= 4.8828+/- 0.014
 mean_var=80.4862+/-15.850, 0's: 0 Z-trim(125.0): 2  B-trim: 307 in 1/54
 Lambda= 0.142960
 statistics sampled from 47662 (47664) to 47662 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.881), E-opt: 0.2 (0.559), width:  16
 Scan time:  4.290

The best scores are:                                      opt bits E(85289)
NP_001096046 (OMIM: 300944) putative chondrosarcom (  78)  551 121.4 1.5e-28
NP_705611 (OMIM: 300944) putative chondrosarcoma-a (  78)  551 121.4 1.5e-28


>>NP_001096046 (OMIM: 300944) putative chondrosarcoma-as  (78 aa)
 initn: 551 init1: 551 opt: 551  Z-score: 633.6  bits: 121.4 E(85289): 1.5e-28
Smith-Waterman score: 551; 100.0% identity (100.0% similar) in 78 aa overlap (1-78:1-78)

               10        20        30        40        50        60
pF1KE6 MSATTACWPAFTVLGEARGDQVDWSRLYRDTGLVKMSRKPRASSPFSNNHPSTPKRFPRQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSATTACWPAFTVLGEARGDQVDWSRLYRDTGLVKMSRKPRASSPFSNNHPSTPKRFPRQ
               10        20        30        40        50        60

               70        
pF1KE6 PRREKGPVKEVPGTKGSP
       ::::::::::::::::::
NP_001 PRREKGPVKEVPGTKGSP
               70        

>>NP_705611 (OMIM: 300944) putative chondrosarcoma-assoc  (78 aa)
 initn: 551 init1: 551 opt: 551  Z-score: 633.6  bits: 121.4 E(85289): 1.5e-28
Smith-Waterman score: 551; 100.0% identity (100.0% similar) in 78 aa overlap (1-78:1-78)

               10        20        30        40        50        60
pF1KE6 MSATTACWPAFTVLGEARGDQVDWSRLYRDTGLVKMSRKPRASSPFSNNHPSTPKRFPRQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_705 MSATTACWPAFTVLGEARGDQVDWSRLYRDTGLVKMSRKPRASSPFSNNHPSTPKRFPRQ
               10        20        30        40        50        60

               70        
pF1KE6 PRREKGPVKEVPGTKGSP
       ::::::::::::::::::
NP_705 PRREKGPVKEVPGTKGSP
               70        




78 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 13:57:36 2016 done: Tue Nov  8 13:57:36 2016
 Total Scan time:  4.290 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]