FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6510, 78 aa
  1>>>pF1KE6510 78 - 78 aa - 78 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6726+/-0.00048; mu= 7.4920+/- 0.029
 mean_var=81.8872+/-16.022, 0's: 0 Z-trim(117.5): 1  B-trim: 0 in 0/52
 Lambda= 0.141731
 statistics sampled from 18224 (18225) to 18224 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.886), E-opt: 0.2 (0.56), width:  16
 Scan time:  1.120

The best scores are:                                      opt bits E(32554)
CCDS76047.1 CSAG1 gene_id:158511|Hs108|chrX        (  78)  551 120.3 1.2e-28


>>CCDS76047.1 CSAG1 gene_id:158511|Hs108|chrX             (78 aa)
 initn: 551 init1: 551 opt: 551  Z-score: 627.8  bits: 120.3 E(32554): 1.2e-28
Smith-Waterman score: 551; 100.0% identity (100.0% similar) in 78 aa overlap (1-78:1-78)

               10        20        30        40        50        60
pF1KE6 MSATTACWPAFTVLGEARGDQVDWSRLYRDTGLVKMSRKPRASSPFSNNHPSTPKRFPRQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 MSATTACWPAFTVLGEARGDQVDWSRLYRDTGLVKMSRKPRASSPFSNNHPSTPKRFPRQ
               10        20        30        40        50        60

               70        
pF1KE6 PRREKGPVKEVPGTKGSP
       ::::::::::::::::::
CCDS76 PRREKGPVKEVPGTKGSP
               70        




78 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 13:57:35 2016 done: Tue Nov  8 13:57:35 2016
 Total Scan time:  1.120 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]