Result of FASTA (omim) for
pFN21AE3044
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3044, 183 aa
1>>>pF1KE3044 183 - 183 aa - 183 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.4710+/-0.000419; mu= 18.1672+/- 0.026
mean_var=77.8999+/-15.467, 0's: 0 Z-trim(113.5): 431 B-trim: 1123 in 2/51
Lambda= 0.145313
statistics sampled from 22323 (22825) to 22323 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.656), E-opt: 0.2 (0.268), width: 16
Scan time: 5.400
The best scores are: opt bits E(85289)
NP_066361 (OMIM: 179540) ras-related protein Rap-2 ( 183) 1109 241.6 5.5e-64
NP_002877 (OMIM: 179541) ras-related protein Rap-2 ( 183) 1050 229.2 2.9e-60
XP_016857452 (OMIM: 179520) PREDICTED: ras-related ( 184) 744 165.1 5.9e-41
XP_016857453 (OMIM: 179520) PREDICTED: ras-related ( 184) 744 165.1 5.9e-41
NP_001010935 (OMIM: 179520) ras-related protein Ra ( 184) 744 165.1 5.9e-41
NP_001278825 (OMIM: 179520) ras-related protein Ra ( 184) 744 165.1 5.9e-41
NP_002875 (OMIM: 179520) ras-related protein Rap-1 ( 184) 744 165.1 5.9e-41
XP_016857451 (OMIM: 179520) PREDICTED: ras-related ( 184) 744 165.1 5.9e-41
NP_056461 (OMIM: 179530) ras-related protein Rap-1 ( 184) 731 162.3 3.9e-40
NP_001010942 (OMIM: 179530) ras-related protein Ra ( 184) 731 162.3 3.9e-40
XP_016857449 (OMIM: 179520) PREDICTED: ras-related ( 195) 689 153.6 1.8e-37
XP_016857450 (OMIM: 179520) PREDICTED: ras-related ( 195) 689 153.6 1.8e-37
XP_011518955 (OMIM: 109800,114480,137215,163200,19 ( 188) 583 131.3 8.7e-31
NP_004976 (OMIM: 109800,114480,137215,163200,19007 ( 188) 583 131.3 8.7e-31
NP_203524 (OMIM: 109800,114480,137215,163200,19007 ( 189) 581 130.9 1.2e-30
XP_006719132 (OMIM: 109800,114480,137215,163200,19 ( 189) 581 130.9 1.2e-30
XP_016874782 (OMIM: 109800,114480,137215,163200,19 ( 227) 581 131.0 1.3e-30
NP_005334 (OMIM: 109800,137550,162900,163200,18847 ( 189) 578 130.3 1.8e-30
NP_001123914 (OMIM: 109800,137550,162900,163200,18 ( 189) 578 130.3 1.8e-30
NP_002515 (OMIM: 114500,137550,162900,163200,16479 ( 189) 574 129.4 3.2e-30
NP_008843 (OMIM: 609591,615355) GTP-binding protei ( 219) 574 129.5 3.6e-30
NP_001243750 (OMIM: 609591,615355) GTP-binding pro ( 236) 574 129.5 3.7e-30
NP_002921 (OMIM: 609592) GTP-binding protein Rit2 ( 217) 568 128.2 8.4e-30
XP_016860111 (OMIM: 179551) PREDICTED: ras-related ( 206) 549 124.2 1.3e-28
XP_005263786 (OMIM: 179551) PREDICTED: ras-related ( 206) 549 124.2 1.3e-28
XP_005263784 (OMIM: 179551) PREDICTED: ras-related ( 206) 549 124.2 1.3e-28
NP_002872 (OMIM: 179551) ras-related protein Ral-B ( 206) 549 124.2 1.3e-28
XP_005263785 (OMIM: 179551) PREDICTED: ras-related ( 206) 549 124.2 1.3e-28
XP_016860110 (OMIM: 179551) PREDICTED: ras-related ( 228) 549 124.3 1.4e-28
XP_005263781 (OMIM: 179551) PREDICTED: ras-related ( 228) 549 124.3 1.4e-28
XP_011509875 (OMIM: 179551) PREDICTED: ras-related ( 229) 549 124.3 1.4e-28
NP_060064 (OMIM: 607863) GTP-binding protein Di-Ra ( 199) 541 122.5 4e-28
NP_789765 (OMIM: 109800,137550,162900,163200,18847 ( 170) 534 121.0 1e-27
NP_036382 (OMIM: 600098) ras-related protein R-Ras ( 204) 530 120.2 2e-27
NP_005393 (OMIM: 179550) ras-related protein Ral-A ( 206) 521 118.4 7.5e-27
XP_006715825 (OMIM: 179550) PREDICTED: ras-related ( 206) 521 118.4 7.5e-27
XP_011513768 (OMIM: 179550) PREDICTED: ras-related ( 206) 521 118.4 7.5e-27
NP_001239019 (OMIM: 608435) ras-related protein M- ( 208) 518 117.7 1.2e-26
NP_001078518 (OMIM: 608435) ras-related protein M- ( 208) 518 117.7 1.2e-26
XP_005247285 (OMIM: 608435) PREDICTED: ras-related ( 208) 518 117.7 1.2e-26
NP_036351 (OMIM: 608435) ras-related protein M-Ras ( 208) 518 117.7 1.2e-26
XP_016861376 (OMIM: 608435) PREDICTED: ras-related ( 208) 518 117.7 1.2e-26
NP_660156 (OMIM: 607862) GTP-binding protein Di-Ra ( 198) 511 116.2 3.1e-26
XP_011526015 (OMIM: 607862) PREDICTED: GTP-binding ( 232) 511 116.3 3.5e-26
NP_006261 (OMIM: 165090) ras-related protein R-Ras ( 218) 507 115.5 6e-26
NP_001243749 (OMIM: 609591,615355) GTP-binding pro ( 183) 481 109.9 2.3e-24
NP_001259006 (OMIM: 609592) GTP-binding protein Ri ( 153) 459 105.2 5.1e-23
XP_011509876 (OMIM: 179551) PREDICTED: ras-related ( 195) 449 103.2 2.5e-22
XP_005247286 (OMIM: 608435) PREDICTED: ras-related ( 170) 445 102.3 4.2e-22
NP_116307 (OMIM: 612664) ras-related and estrogen- ( 199) 437 100.7 1.5e-21
>>NP_066361 (OMIM: 179540) ras-related protein Rap-2a pr (183 aa)
initn: 1126 init1: 1109 opt: 1109 Z-score: 1269.8 bits: 241.6 E(85289): 5.5e-64
Smith-Waterman score: 1109; 91.3% identity (97.3% similar) in 183 aa overlap (1-183:1-183)
10 20 30 40 50 60
pF1KE3 MREYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_066 MREYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 TEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIVRVKRYEKVPLILVGNKVDL
::::::::::::::::::::::::::::::::::::::::.:::::::::.:::::::::
NP_066 TEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 EPEREVMSSEGRALAQEWGCPFMETSAKSKSMVDELFAEIVRQMNYSSLPEKQDQCCTTC
: :::: ::::::::.::::::::::::::.:::::::::::::::.. :.:.: ::..:
NP_066 ESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQMNYAAQPDKDDPCCSAC
130 140 150 160 170 180
pF1KE3 VVQ
.:
NP_066 NIQ
>>NP_002877 (OMIM: 179541) ras-related protein Rap-2b [H (183 aa)
initn: 1067 init1: 1050 opt: 1050 Z-score: 1203.0 bits: 229.2 E(85289): 2.9e-60
Smith-Waterman score: 1050; 86.3% identity (96.2% similar) in 182 aa overlap (1-182:1-182)
10 20 30 40 50 60
pF1KE3 MREYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAG
::::::::::::::::::::::::::.:::::::::::::::::::::::::::::::::
NP_002 MREYKVVVLGSGGVGKSALTVQFVTGSFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 TEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIVRVKRYEKVPLILVGNKVDL
::::::::::::::::::::::::::::::::::::::::.::::::.::.:::::::::
NP_002 TEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYERVPMILVGNKVDL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 EPEREVMSSEGRALAQEWGCPFMETSAKSKSMVDELFAEIVRQMNYSSLPEKQDQCCTTC
: :::: .::.:::.::.:::::::::.:. ::::::::::::::.. :. .. ::..:
NP_002 EGEREVSYGEGKALAEEWSCPFMETSAKNKASVDELFAEIVRQMNYAAQPNGDEGCCSAC
130 140 150 160 170 180
pF1KE3 VVQ
:.
NP_002 VIL
>>XP_016857452 (OMIM: 179520) PREDICTED: ras-related pro (184 aa)
initn: 703 init1: 634 opt: 744 Z-score: 856.2 bits: 165.1 E(85289): 5.9e-41
Smith-Waterman score: 744; 61.7% identity (83.1% similar) in 183 aa overlap (1-182:1-183)
10 20 30 40 50 60
pF1KE3 MREYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAG
:::::.:::::::::::::::::: : :.::::::::: :::..::: . .::::::::
XP_016 MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 TEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIVRVKRYEKVPLILVGNKVDL
::::..:::::.:::::: ::::.. :..:.:.. .:.::.::: : ::.:::::: ::
XP_016 TEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDL
70 80 90 100 110 120
130 140 150 160 170
pF1KE3 EPEREVMSSEGRALAQEW-GCPFMETSAKSKSMVDELFAEIVRQMNYSSLPEKQDQCCTT
: :: : . .:. ::..: .: :.:.::::: :.:.: ..:::.: .. ::. .
XP_016 EDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQINRKTPVEKKKPKKKS
130 140 150 160 170 180
180
pF1KE3 CVVQ
:..
XP_016 CLLL
>>XP_016857453 (OMIM: 179520) PREDICTED: ras-related pro (184 aa)
initn: 703 init1: 634 opt: 744 Z-score: 856.2 bits: 165.1 E(85289): 5.9e-41
Smith-Waterman score: 744; 61.7% identity (83.1% similar) in 183 aa overlap (1-182:1-183)
10 20 30 40 50 60
pF1KE3 MREYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAG
:::::.:::::::::::::::::: : :.::::::::: :::..::: . .::::::::
XP_016 MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 TEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIVRVKRYEKVPLILVGNKVDL
::::..:::::.:::::: ::::.. :..:.:.. .:.::.::: : ::.:::::: ::
XP_016 TEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDL
70 80 90 100 110 120
130 140 150 160 170
pF1KE3 EPEREVMSSEGRALAQEW-GCPFMETSAKSKSMVDELFAEIVRQMNYSSLPEKQDQCCTT
: :: : . .:. ::..: .: :.:.::::: :.:.: ..:::.: .. ::. .
XP_016 EDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQINRKTPVEKKKPKKKS
130 140 150 160 170 180
180
pF1KE3 CVVQ
:..
XP_016 CLLL
>>NP_001010935 (OMIM: 179520) ras-related protein Rap-1A (184 aa)
initn: 703 init1: 634 opt: 744 Z-score: 856.2 bits: 165.1 E(85289): 5.9e-41
Smith-Waterman score: 744; 61.7% identity (83.1% similar) in 183 aa overlap (1-182:1-183)
10 20 30 40 50 60
pF1KE3 MREYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAG
:::::.:::::::::::::::::: : :.::::::::: :::..::: . .::::::::
NP_001 MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 TEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIVRVKRYEKVPLILVGNKVDL
::::..:::::.:::::: ::::.. :..:.:.. .:.::.::: : ::.:::::: ::
NP_001 TEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDL
70 80 90 100 110 120
130 140 150 160 170
pF1KE3 EPEREVMSSEGRALAQEW-GCPFMETSAKSKSMVDELFAEIVRQMNYSSLPEKQDQCCTT
: :: : . .:. ::..: .: :.:.::::: :.:.: ..:::.: .. ::. .
NP_001 EDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQINRKTPVEKKKPKKKS
130 140 150 160 170 180
180
pF1KE3 CVVQ
:..
NP_001 CLLL
>>NP_001278825 (OMIM: 179520) ras-related protein Rap-1A (184 aa)
initn: 703 init1: 634 opt: 744 Z-score: 856.2 bits: 165.1 E(85289): 5.9e-41
Smith-Waterman score: 744; 61.7% identity (83.1% similar) in 183 aa overlap (1-182:1-183)
10 20 30 40 50 60
pF1KE3 MREYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAG
:::::.:::::::::::::::::: : :.::::::::: :::..::: . .::::::::
NP_001 MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 TEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIVRVKRYEKVPLILVGNKVDL
::::..:::::.:::::: ::::.. :..:.:.. .:.::.::: : ::.:::::: ::
NP_001 TEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDL
70 80 90 100 110 120
130 140 150 160 170
pF1KE3 EPEREVMSSEGRALAQEW-GCPFMETSAKSKSMVDELFAEIVRQMNYSSLPEKQDQCCTT
: :: : . .:. ::..: .: :.:.::::: :.:.: ..:::.: .. ::. .
NP_001 EDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQINRKTPVEKKKPKKKS
130 140 150 160 170 180
180
pF1KE3 CVVQ
:..
NP_001 CLLL
>>NP_002875 (OMIM: 179520) ras-related protein Rap-1A pr (184 aa)
initn: 703 init1: 634 opt: 744 Z-score: 856.2 bits: 165.1 E(85289): 5.9e-41
Smith-Waterman score: 744; 61.7% identity (83.1% similar) in 183 aa overlap (1-182:1-183)
10 20 30 40 50 60
pF1KE3 MREYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAG
:::::.:::::::::::::::::: : :.::::::::: :::..::: . .::::::::
NP_002 MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 TEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIVRVKRYEKVPLILVGNKVDL
::::..:::::.:::::: ::::.. :..:.:.. .:.::.::: : ::.:::::: ::
NP_002 TEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDL
70 80 90 100 110 120
130 140 150 160 170
pF1KE3 EPEREVMSSEGRALAQEW-GCPFMETSAKSKSMVDELFAEIVRQMNYSSLPEKQDQCCTT
: :: : . .:. ::..: .: :.:.::::: :.:.: ..:::.: .. ::. .
NP_002 EDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQINRKTPVEKKKPKKKS
130 140 150 160 170 180
180
pF1KE3 CVVQ
:..
NP_002 CLLL
>>XP_016857451 (OMIM: 179520) PREDICTED: ras-related pro (184 aa)
initn: 703 init1: 634 opt: 744 Z-score: 856.2 bits: 165.1 E(85289): 5.9e-41
Smith-Waterman score: 744; 61.7% identity (83.1% similar) in 183 aa overlap (1-182:1-183)
10 20 30 40 50 60
pF1KE3 MREYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAG
:::::.:::::::::::::::::: : :.::::::::: :::..::: . .::::::::
XP_016 MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 TEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIVRVKRYEKVPLILVGNKVDL
::::..:::::.:::::: ::::.. :..:.:.. .:.::.::: : ::.:::::: ::
XP_016 TEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDL
70 80 90 100 110 120
130 140 150 160 170
pF1KE3 EPEREVMSSEGRALAQEW-GCPFMETSAKSKSMVDELFAEIVRQMNYSSLPEKQDQCCTT
: :: : . .:. ::..: .: :.:.::::: :.:.: ..:::.: .. ::. .
XP_016 EDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQINRKTPVEKKKPKKKS
130 140 150 160 170 180
180
pF1KE3 CVVQ
:..
XP_016 CLLL
>>NP_056461 (OMIM: 179530) ras-related protein Rap-1b is (184 aa)
initn: 694 init1: 632 opt: 731 Z-score: 841.5 bits: 162.3 E(85289): 3.9e-40
Smith-Waterman score: 731; 61.9% identity (85.1% similar) in 181 aa overlap (1-176:1-181)
10 20 30 40 50 60
pF1KE3 MREYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAG
:::::.:::::::::::::::::: : :.::::::::: :::..:::.. .::::::::
NP_056 MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDAQQCMLEILDTAG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 TEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIVRVKRYEKVPLILVGNKVDL
::::..:::::.:::::: ::::.. :..:.:.. .:.::.::: . ::.:::::: ::
NP_056 TEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDL
70 80 90 100 110 120
130 140 150 160 170
pF1KE3 EPEREVMSSEGRALAQEWG-CPFMETSAKSKSMVDELFAEIVRQMNYSS-LP---EKQDQ
: :: : . .:. ::..:. : :.:.::::: :.:.: ..:::.: .. .: .:...
NP_056 EDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQINRKTPVPGKARKKSS
130 140 150 160 170 180
180
pF1KE3 CCTTCVVQ
:
NP_056 CQLL
>>NP_001010942 (OMIM: 179530) ras-related protein Rap-1b (184 aa)
initn: 694 init1: 632 opt: 731 Z-score: 841.5 bits: 162.3 E(85289): 3.9e-40
Smith-Waterman score: 731; 61.9% identity (85.1% similar) in 181 aa overlap (1-176:1-181)
10 20 30 40 50 60
pF1KE3 MREYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAG
:::::.:::::::::::::::::: : :.::::::::: :::..:::.. .::::::::
NP_001 MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDAQQCMLEILDTAG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 TEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIVRVKRYEKVPLILVGNKVDL
::::..:::::.:::::: ::::.. :..:.:.. .:.::.::: . ::.:::::: ::
NP_001 TEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDL
70 80 90 100 110 120
130 140 150 160 170
pF1KE3 EPEREVMSSEGRALAQEWG-CPFMETSAKSKSMVDELFAEIVRQMNYSS-LP---EKQDQ
: :: : . .:. ::..:. : :.:.::::: :.:.: ..:::.: .. .: .:...
NP_001 EDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQINRKTPVPGKARKKSS
130 140 150 160 170 180
180
pF1KE3 CCTTCVVQ
:
NP_001 CQLL
183 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 02:20:04 2016 done: Sun Nov 6 02:20:05 2016
Total Scan time: 5.400 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]