Result of FASTA (omim) for
pFN21AE5252
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE5252, 181 aa
1>>>pF1KE5252 181 - 181 aa - 181 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.9015+/-0.000362; mu= 15.3136+/- 0.023
mean_var=60.3503+/-11.630, 0's: 0 Z-trim(114.1): 12 B-trim: 0 in 0/49
Lambda= 0.165095
statistics sampled from 23721 (23732) to 23721 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.677), E-opt: 0.2 (0.278), width: 16
Scan time: 5.130
The best scores are: opt bits E(85289)
NP_054779 (OMIM: 300587) malignant T-cell-amplifie ( 181) 1230 300.9 7.2e-82
NP_001131026 (OMIM: 300587) malignant T-cell-ampli ( 182) 1206 295.2 3.8e-80
XP_011507560 (OMIM: 613709) PREDICTED: eukaryotic ( 326) 212 58.6 1.1e-08
XP_005277566 (OMIM: 613709) PREDICTED: eukaryotic ( 534) 212 58.8 1.7e-08
XP_011507559 (OMIM: 613709) PREDICTED: eukaryotic ( 581) 212 58.8 1.8e-08
NP_008824 (OMIM: 613709) eukaryotic translation in ( 584) 212 58.8 1.8e-08
XP_016856020 (OMIM: 613709) PREDICTED: eukaryotic ( 410) 197 55.1 1.6e-07
NP_001188407 (OMIM: 613709) eukaryotic translation ( 460) 197 55.1 1.8e-07
XP_016856019 (OMIM: 613709) PREDICTED: eukaryotic ( 424) 151 44.2 0.00033
>>NP_054779 (OMIM: 300587) malignant T-cell-amplified se (181 aa)
initn: 1230 init1: 1230 opt: 1230 Z-score: 1590.8 bits: 300.9 E(85289): 7.2e-82
Smith-Waterman score: 1230; 100.0% identity (100.0% similar) in 181 aa overlap (1-181:1-181)
10 20 30 40 50 60
pF1KE5 MFKKFDEKENVSNCIQLKTSVIKGIKNQLIEQFPGIEPWLNQIMPKKDPVKIVRCHEHIE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_054 MFKKFDEKENVSNCIQLKTSVIKGIKNQLIEQFPGIEPWLNQIMPKKDPVKIVRCHEHIE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 ILTVNGELLFFRQREGPFYPTLRLLHKYPFILPHQQVDKGAIKFVLSGANIMCPGLTSPG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_054 ILTVNGELLFFRQREGPFYPTLRLLHKYPFILPHQQVDKGAIKFVLSGANIMCPGLTSPG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE5 AKLYPAAVDTIVAIMAEGKQHALCVGVMKMSAEDIEKVNKGIGIENIHYLNDGLWHMKTY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_054 AKLYPAAVDTIVAIMAEGKQHALCVGVMKMSAEDIEKVNKGIGIENIHYLNDGLWHMKTY
130 140 150 160 170 180
pF1KE5 K
:
NP_054 K
>>NP_001131026 (OMIM: 300587) malignant T-cell-amplified (182 aa)
initn: 1206 init1: 1206 opt: 1206 Z-score: 1559.8 bits: 295.2 E(85289): 3.8e-80
Smith-Waterman score: 1206; 99.4% identity (100.0% similar) in 178 aa overlap (4-181:5-182)
10 20 30 40 50
pF1KE5 MFKKFDEKENVSNCIQLKTSVIKGIKNQLIEQFPGIEPWLNQIMPKKDPVKIVRCHEHI
.:::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MGKGRFDEKENVSNCIQLKTSVIKGIKNQLIEQFPGIEPWLNQIMPKKDPVKIVRCHEHI
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE5 EILTVNGELLFFRQREGPFYPTLRLLHKYPFILPHQQVDKGAIKFVLSGANIMCPGLTSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EILTVNGELLFFRQREGPFYPTLRLLHKYPFILPHQQVDKGAIKFVLSGANIMCPGLTSP
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE5 GAKLYPAAVDTIVAIMAEGKQHALCVGVMKMSAEDIEKVNKGIGIENIHYLNDGLWHMKT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GAKLYPAAVDTIVAIMAEGKQHALCVGVMKMSAEDIEKVNKGIGIENIHYLNDGLWHMKT
130 140 150 160 170 180
180
pF1KE5 YK
::
NP_001 YK
>>XP_011507560 (OMIM: 613709) PREDICTED: eukaryotic tran (326 aa)
initn: 144 init1: 127 opt: 212 Z-score: 276.6 bits: 58.6 E(85289): 1.1e-08
Smith-Waterman score: 212; 28.0% identity (56.6% similar) in 182 aa overlap (1-175:1-177)
10 20 30 40 50
pF1KE5 MFKK-FDEKENVSNCIQLKTSVIKGIKNQLIEQFPGI-EPWLNQIMPKKDPVKIVRCHEH
:: : : : :.. .: : . .. .. :: . .....: :. ..::. . :
XP_011 MFAKAFRVKSNTA----IKGSDRRKLRADVTTAFPTLGTDQVSELVPGKEELNIVKLYAH
10 20 30 40 50
60 70 80 90 100 110
pF1KE5 ----IEILTVNGELLFFRQREGPFYPTLRLLHKYPFILPHQQVDKGAIKFVLSGANIMCP
. . . .:. ..: . : .:::. : .:: .:: . ... ...::..: :
XP_011 KGDAVTVYVSGGNPILF-ELEKNLYPTVYTLWSYPDLLPTFTTWPLVLEKLVGGADLMLP
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE5 GLTSPGAKLYPAAVDTIVAIMAEGKQHALCVGVMKMS-AEDIEKVNKGIGIENIHYLNDG
::. : : : . . :: :.. . .:: :: :: . . :: :. .: .:
XP_011 GLVMPPAGLPQVQKGDLCAISLVGNRAPVAIGVAAMSTAEMLTSGLKGRGFSVLHTYQDH
120 130 140 150 160 170
180
pF1KE5 LWHMKTYK
::
XP_011 LWRSGNKSSPPSIAPLALDSADLSEEKGSVQMDSTLQGDMRHMTLEGEEENGEVHQARED
180 190 200 210 220 230
>>XP_005277566 (OMIM: 613709) PREDICTED: eukaryotic tran (534 aa)
initn: 127 init1: 127 opt: 212 Z-score: 273.5 bits: 58.8 E(85289): 1.7e-08
Smith-Waterman score: 212; 28.0% identity (56.6% similar) in 182 aa overlap (1-175:1-177)
10 20 30 40 50
pF1KE5 MFKK-FDEKENVSNCIQLKTSVIKGIKNQLIEQFPGI-EPWLNQIMPKKDPVKIVRCHEH
:: : : : :.. .: : . .. .. :: . .....: :. ..::. . :
XP_005 MFAKAFRVKSNTA----IKGSDRRKLRADVTTAFPTLGTDQVSELVPGKEELNIVKLYAH
10 20 30 40 50
60 70 80 90 100 110
pF1KE5 ----IEILTVNGELLFFRQREGPFYPTLRLLHKYPFILPHQQVDKGAIKFVLSGANIMCP
. . . .:. ..: . : .:::. : .:: .:: . ... ...::..: :
XP_005 KGDAVTVYVSGGNPILF-ELEKNLYPTVYTLWSYPDLLPTFTTWPLVLEKLVGGADLMLP
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE5 GLTSPGAKLYPAAVDTIVAIMAEGKQHALCVGVMKMS-AEDIEKVNKGIGIENIHYLNDG
::. : : : . . :: :.. . .:: :: :: . . :: :. .: .:
XP_005 GLVMPPAGLPQVQKGDLCAISLVGNRAPVAIGVAAMSTAEMLTSGLKGRGFSVLHTYQDH
120 130 140 150 160 170
180
pF1KE5 LWHMKTYK
::
XP_005 LWRSGNKSSPPSIAPLALDSADLSEEKGSVQMDSTLQGDMRHMTLEGEEENGEVHQARED
180 190 200 210 220 230
>>XP_011507559 (OMIM: 613709) PREDICTED: eukaryotic tran (581 aa)
initn: 127 init1: 127 opt: 212 Z-score: 273.0 bits: 58.8 E(85289): 1.8e-08
Smith-Waterman score: 212; 28.0% identity (56.6% similar) in 182 aa overlap (1-175:1-177)
10 20 30 40 50
pF1KE5 MFKK-FDEKENVSNCIQLKTSVIKGIKNQLIEQFPGI-EPWLNQIMPKKDPVKIVRCHEH
:: : : : :.. .: : . .. .. :: . .....: :. ..::. . :
XP_011 MFAKAFRVKSNTA----IKGSDRRKLRADVTTAFPTLGTDQVSELVPGKEELNIVKLYAH
10 20 30 40 50
60 70 80 90 100 110
pF1KE5 ----IEILTVNGELLFFRQREGPFYPTLRLLHKYPFILPHQQVDKGAIKFVLSGANIMCP
. . . .:. ..: . : .:::. : .:: .:: . ... ...::..: :
XP_011 KGDAVTVYVSGGNPILF-ELEKNLYPTVYTLWSYPDLLPTFTTWPLVLEKLVGGADLMLP
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE5 GLTSPGAKLYPAAVDTIVAIMAEGKQHALCVGVMKMS-AEDIEKVNKGIGIENIHYLNDG
::. : : : . . :: :.. . .:: :: :: . . :: :. .: .:
XP_011 GLVMPPAGLPQVQKGDLCAISLVGNRAPVAIGVAAMSTAEMLTSGLKGRGFSVLHTYQDH
120 130 140 150 160 170
180
pF1KE5 LWHMKTYK
::
XP_011 LWRSGNKSSPPSIAPLALDSADLSEEKGSVQMDSTLQGDMRHMTLEGEEENGEVHQARED
180 190 200 210 220 230
>>NP_008824 (OMIM: 613709) eukaryotic translation initia (584 aa)
initn: 127 init1: 127 opt: 212 Z-score: 273.0 bits: 58.8 E(85289): 1.8e-08
Smith-Waterman score: 212; 28.0% identity (56.6% similar) in 182 aa overlap (1-175:1-177)
10 20 30 40 50
pF1KE5 MFKK-FDEKENVSNCIQLKTSVIKGIKNQLIEQFPGI-EPWLNQIMPKKDPVKIVRCHEH
:: : : : :.. .: : . .. .. :: . .....: :. ..::. . :
NP_008 MFAKAFRVKSNTA----IKGSDRRKLRADVTTAFPTLGTDQVSELVPGKEELNIVKLYAH
10 20 30 40 50
60 70 80 90 100 110
pF1KE5 ----IEILTVNGELLFFRQREGPFYPTLRLLHKYPFILPHQQVDKGAIKFVLSGANIMCP
. . . .:. ..: . : .:::. : .:: .:: . ... ...::..: :
NP_008 KGDAVTVYVSGGNPILF-ELEKNLYPTVYTLWSYPDLLPTFTTWPLVLEKLVGGADLMLP
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE5 GLTSPGAKLYPAAVDTIVAIMAEGKQHALCVGVMKMS-AEDIEKVNKGIGIENIHYLNDG
::. : : : . . :: :.. . .:: :: :: . . :: :. .: .:
NP_008 GLVMPPAGLPQVQKGDLCAISLVGNRAPVAIGVAAMSTAEMLTSGLKGRGFSVLHTYQDH
120 130 140 150 160 170
180
pF1KE5 LWHMKTYK
::
NP_008 LWRSGNKSSPPSIAPLALDSADLSEEKGSVQMDSTLQGDMRHMTLEGEEENGEVHQARED
180 190 200 210 220 230
>>XP_016856020 (OMIM: 613709) PREDICTED: eukaryotic tran (410 aa)
initn: 127 init1: 127 opt: 197 Z-score: 255.9 bits: 55.1 E(85289): 1.6e-07
Smith-Waterman score: 197; 27.6% identity (56.4% similar) in 181 aa overlap (1-174:1-176)
10 20 30 40 50
pF1KE5 MFKK-FDEKENVSNCIQLKTSVIKGIKNQLIEQFPGI-EPWLNQIMPKKDPVKIVRCHEH
:: : : : :.. .: : . .. .. :: . .....: :. ..::. . :
XP_016 MFAKAFRVKSNTA----IKGSDRRKLRADVTTAFPTLGTDQVSELVPGKEELNIVKLYAH
10 20 30 40 50
60 70 80 90 100 110
pF1KE5 ----IEILTVNGELLFFRQREGPFYPTLRLLHKYPFILPHQQVDKGAIKFVLSGANIMCP
. . . .:. ..: . : .:::. : .:: .:: . ... ...::..: :
XP_016 KGDAVTVYVSGGNPILF-ELEKNLYPTVYTLWSYPDLLPTFTTWPLVLEKLVGGADLMLP
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE5 GLTSPGAKLYPAAVDTIVAIMAEGKQHALCVGVMKMS-AEDIEKVNKGIGIENIHYLNDG
::. : : : . . :: :.. . .:: :: :: . . :: :. .: .:
XP_016 GLVMPPAGLPQVQKGDLCAISLVGNRAPVAIGVAAMSTAEMLTSGLKGRGFSVLHTYQDH
120 130 140 150 160 170
180
pF1KE5 LWHMKTYK
:
XP_016 LCPEGRQLDIKKSSYKKLSKFLQQMQQEQIIQVKELSKGVESIVAVDWKHPRKGSFLEGS
180 190 200 210 220 230
>>NP_001188407 (OMIM: 613709) eukaryotic translation ini (460 aa)
initn: 127 init1: 127 opt: 197 Z-score: 255.2 bits: 55.1 E(85289): 1.8e-07
Smith-Waterman score: 197; 27.6% identity (56.4% similar) in 181 aa overlap (1-174:1-176)
10 20 30 40 50
pF1KE5 MFKK-FDEKENVSNCIQLKTSVIKGIKNQLIEQFPGI-EPWLNQIMPKKDPVKIVRCHEH
:: : : : :.. .: : . .. .. :: . .....: :. ..::. . :
NP_001 MFAKAFRVKSNTA----IKGSDRRKLRADVTTAFPTLGTDQVSELVPGKEELNIVKLYAH
10 20 30 40 50
60 70 80 90 100 110
pF1KE5 ----IEILTVNGELLFFRQREGPFYPTLRLLHKYPFILPHQQVDKGAIKFVLSGANIMCP
. . . .:. ..: . : .:::. : .:: .:: . ... ...::..: :
NP_001 KGDAVTVYVSGGNPILF-ELEKNLYPTVYTLWSYPDLLPTFTTWPLVLEKLVGGADLMLP
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE5 GLTSPGAKLYPAAVDTIVAIMAEGKQHALCVGVMKMS-AEDIEKVNKGIGIENIHYLNDG
::. : : : . . :: :.. . .:: :: :: . . :: :. .: .:
NP_001 GLVMPPAGLPQVQKGDLCAISLVGNRAPVAIGVAAMSTAEMLTSGLKGRGFSVLHTYQDH
120 130 140 150 160 170
180
pF1KE5 LWHMKTYK
:
NP_001 LCPEGRQLDIKKSSYKKLSKFLQQMQQEQIIQVKELSKGVESIVAVDWKHPRITSFVIPE
180 190 200 210 220 230
>>XP_016856019 (OMIM: 613709) PREDICTED: eukaryotic tran (424 aa)
initn: 101 init1: 101 opt: 151 Z-score: 196.5 bits: 44.2 E(85289): 0.00033
Smith-Waterman score: 153; 25.7% identity (55.6% similar) in 187 aa overlap (1-167:1-182)
10 20 30 40 50
pF1KE5 MFKK-FDEKENVSNCIQLKTSVIKGIKNQLIEQFPGI-EPWLNQIMPKKDPVKIVRCHEH
:: : : : :.. .: : . .. .. :: . .....: :. ..::. . :
XP_016 MFAKAFRVKSNTA----IKGSDRRKLRADVTTAFPTLGTDQVSELVPGKEELNIVKLYAH
10 20 30 40 50
60 70 80 90 100 110
pF1KE5 ----IEILTVNGELLFFRQREGPFYPTLRLLHKYPFILPHQQVDKGAIKFVLSGANIMCP
. . . .:. ..: . : .:::. : .:: .:: . ... ...::..: :
XP_016 KGDAVTVYVSGGNPILF-ELEKNLYPTVYTLWSYPDLLPTFTTWPLVLEKLVGGADLMLP
60 70 80 90 100 110
120 130 140 150 160
pF1KE5 GLTSPGAKLYPAAVDTIVAIM-----AEGKQ--------HALCVGVMKMSAEDIEKVNK-
::. : : : . . :: ::.: . : ...:. :.: .:..
XP_016 GLVMPPAGLPQVQKGDLCAISLVGNSPEGRQLDIKKSSYKKLSKFLQQMQQEQIIQVKEL
120 130 140 150 160 170
170 180
pF1KE5 GIGIENIHYLNDGLWHMKTYK
. :.:.:
XP_016 SKGVESIVAVDWKHPRITSFVIPEPSPTSQTIQEGSREQPYHPPDIKPLYCVPASMTLLF
180 190 200 210 220 230
181 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 22:53:39 2016 done: Mon Nov 7 22:53:40 2016
Total Scan time: 5.130 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]