FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5252, 181 aa 1>>>pF1KE5252 181 - 181 aa - 181 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.3693+/-0.00077; mu= 12.2422+/- 0.046 mean_var=56.9485+/-11.251, 0's: 0 Z-trim(107.1): 8 B-trim: 0 in 0/49 Lambda= 0.169955 statistics sampled from 9364 (9368) to 9364 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.689), E-opt: 0.2 (0.288), width: 16 Scan time: 1.590 The best scores are: opt bits E(32554) CCDS14601.1 MCTS1 gene_id:28985|Hs108|chrX ( 181) 1230 309.4 7.9e-85 CCDS48160.1 MCTS1 gene_id:28985|Hs108|chrX ( 182) 1206 303.5 4.7e-83 >>CCDS14601.1 MCTS1 gene_id:28985|Hs108|chrX (181 aa) initn: 1230 init1: 1230 opt: 1230 Z-score: 1636.4 bits: 309.4 E(32554): 7.9e-85 Smith-Waterman score: 1230; 100.0% identity (100.0% similar) in 181 aa overlap (1-181:1-181) 10 20 30 40 50 60 pF1KE5 MFKKFDEKENVSNCIQLKTSVIKGIKNQLIEQFPGIEPWLNQIMPKKDPVKIVRCHEHIE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS14 MFKKFDEKENVSNCIQLKTSVIKGIKNQLIEQFPGIEPWLNQIMPKKDPVKIVRCHEHIE 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 ILTVNGELLFFRQREGPFYPTLRLLHKYPFILPHQQVDKGAIKFVLSGANIMCPGLTSPG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS14 ILTVNGELLFFRQREGPFYPTLRLLHKYPFILPHQQVDKGAIKFVLSGANIMCPGLTSPG 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 AKLYPAAVDTIVAIMAEGKQHALCVGVMKMSAEDIEKVNKGIGIENIHYLNDGLWHMKTY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS14 AKLYPAAVDTIVAIMAEGKQHALCVGVMKMSAEDIEKVNKGIGIENIHYLNDGLWHMKTY 130 140 150 160 170 180 pF1KE5 K : CCDS14 K >>CCDS48160.1 MCTS1 gene_id:28985|Hs108|chrX (182 aa) initn: 1206 init1: 1206 opt: 1206 Z-score: 1604.6 bits: 303.5 E(32554): 4.7e-83 Smith-Waterman score: 1206; 99.4% identity (100.0% similar) in 178 aa overlap (4-181:5-182) 10 20 30 40 50 pF1KE5 MFKKFDEKENVSNCIQLKTSVIKGIKNQLIEQFPGIEPWLNQIMPKKDPVKIVRCHEHI .::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS48 MGKGRFDEKENVSNCIQLKTSVIKGIKNQLIEQFPGIEPWLNQIMPKKDPVKIVRCHEHI 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE5 EILTVNGELLFFRQREGPFYPTLRLLHKYPFILPHQQVDKGAIKFVLSGANIMCPGLTSP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS48 EILTVNGELLFFRQREGPFYPTLRLLHKYPFILPHQQVDKGAIKFVLSGANIMCPGLTSP 70 80 90 100 110 120 120 130 140 150 160 170 pF1KE5 GAKLYPAAVDTIVAIMAEGKQHALCVGVMKMSAEDIEKVNKGIGIENIHYLNDGLWHMKT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS48 GAKLYPAAVDTIVAIMAEGKQHALCVGVMKMSAEDIEKVNKGIGIENIHYLNDGLWHMKT 130 140 150 160 170 180 180 pF1KE5 YK :: CCDS48 YK 181 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 22:53:39 2016 done: Mon Nov 7 22:53:39 2016 Total Scan time: 1.590 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]