FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE4004, 97 aa 1>>>pF1KE4004 97 - 97 aa - 97 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.4530+/-0.00026; mu= 13.8816+/- 0.016 mean_var=55.1921+/-11.327, 0's: 0 Z-trim(120.2): 6 B-trim: 2045 in 1/53 Lambda= 0.172638 statistics sampled from 35062 (35068) to 35062 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.799), E-opt: 0.2 (0.411), width: 16 Scan time: 4.320 The best scores are: opt bits E(85289) NP_004076 (OMIM: 300356,304700,311150) mitochondri ( 97) 654 169.7 6.7e-43 NP_001139423 (OMIM: 300356,304700,311150) mitochon ( 48) 295 80.0 3.2e-16 NP_036591 (OMIM: 606659) mitochondrial import inne ( 98) 267 73.3 7e-14 NP_036590 (OMIM: 607383) mitochondrial import inne ( 95) 168 48.6 1.8e-06 >>NP_004076 (OMIM: 300356,304700,311150) mitochondrial i (97 aa) initn: 654 init1: 654 opt: 654 Z-score: 891.1 bits: 169.7 E(85289): 6.7e-43 Smith-Waterman score: 654; 100.0% identity (100.0% similar) in 97 aa overlap (1-97:1-97) 10 20 30 40 50 60 pF1KE4 MDSSSSSSAAGLGAVDPQLQHFIEVETQKQRFQQLVHQMTELCWEKCMDKPGPKLDSRAE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 MDSSSSSSAAGLGAVDPQLQHFIEVETQKQRFQQLVHQMTELCWEKCMDKPGPKLDSRAE 10 20 30 40 50 60 70 80 90 pF1KE4 ACFVNCVERFIDTSQFILNRLEQTQKSKPVFSESLSD ::::::::::::::::::::::::::::::::::::: NP_004 ACFVNCVERFIDTSQFILNRLEQTQKSKPVFSESLSD 70 80 90 >>NP_001139423 (OMIM: 300356,304700,311150) mitochondria (48 aa) initn: 295 init1: 295 opt: 295 Z-score: 412.1 bits: 80.0 E(85289): 3.2e-16 Smith-Waterman score: 295; 100.0% identity (100.0% similar) in 44 aa overlap (1-44:1-44) 10 20 30 40 50 60 pF1KE4 MDSSSSSSAAGLGAVDPQLQHFIEVETQKQRFQQLVHQMTELCWEKCMDKPGPKLDSRAE :::::::::::::::::::::::::::::::::::::::::::: NP_001 MDSSSSSSAAGLGAVDPQLQHFIEVETQKQRFQQLVHQMTELCWVPVA 10 20 30 40 70 80 90 pF1KE4 ACFVNCVERFIDTSQFILNRLEQTQKSKPVFSESLSD >>NP_036591 (OMIM: 606659) mitochondrial import inner me (98 aa) initn: 286 init1: 239 opt: 267 Z-score: 370.2 bits: 73.3 E(85289): 7e-14 Smith-Waterman score: 267; 46.5% identity (73.3% similar) in 86 aa overlap (3-86:10-95) 10 20 30 40 50 pF1KE4 MDSSSSSSAAGLGAVDP-QLQHFIEVETQKQRFQQLVHQMTELCWEKCMDKPG .: . : :: .: .::... .: :: .: ::.. ::::.::..::: NP_036 MRKHSCRKVASLRRTMAELGEADEAELQRLVAAEQQKAQFTAQVHHFMELCWDKCVEKPG 10 20 30 40 50 60 60 70 80 90 pF1KE4 PKLDSRAEACFVNCVERFIDTSQFILNRLEQ-TQKSKPVFSESLSD .::::.: :. .::.:::::. : .:. : .:: NP_036 NRLDSRTENCLSSCVDRFIDTTLAITSRFAQIVQKGGQ 70 80 90 >>NP_036590 (OMIM: 607383) mitochondrial import inner me (95 aa) initn: 168 init1: 128 opt: 168 Z-score: 237.1 bits: 48.6 E(85289): 1.8e-06 Smith-Waterman score: 168; 33.3% identity (72.5% similar) in 69 aa overlap (5-72:7-75) 10 20 30 40 50 pF1KE4 MDSSSSSSAAGLGAVDPQL-QHFIEVETQKQRFQQLVHQMTELCWEKCMDKPGPKLDS :. ...: : .:: : .. ..:. :.:...::. :..::. ::: .::. NP_036 MEGGFGSDFGGSGSGKLDPGLIMEQVKVQIAVANAQELLQRMTDKCFRKCIGKPGGSLDN 10 20 30 40 50 60 60 70 80 90 pF1KE4 RAEACFVNCVERFIDTSQFILNRLEQTQKSKPVFSESLSD . :.. :..:..: NP_036 SEQKCIAMCMDRYMDAWNTVSRAYNSRLQRERANM 70 80 90 97 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 05:21:18 2016 done: Sun Nov 6 05:21:19 2016 Total Scan time: 4.320 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]