FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE4004, 97 aa
  1>>>pF1KE4004 97 - 97 aa - 97 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.6482+/-0.000527; mu= 12.6084+/- 0.032
 mean_var=55.8354+/-11.056, 0's: 0 Z-trim(113.0): 7  B-trim: 0 in 0/52
 Lambda= 0.171640
 statistics sampled from 13656 (13661) to 13656 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.811), E-opt: 0.2 (0.42), width:  16
 Scan time:  1.470

The best scores are:                                      opt bits E(32554)
CCDS14481.1 TIMM8A gene_id:1678|Hs108|chrX         (  97)  654 168.8 4.6e-43
CCDS8357.2 TIMM8B gene_id:26521|Hs108|chr11        (  98)  267 73.0 3.2e-14


>>CCDS14481.1 TIMM8A gene_id:1678|Hs108|chrX              (97 aa)
 initn: 654 init1: 654 opt: 654  Z-score: 886.7  bits: 168.8 E(32554): 4.6e-43
Smith-Waterman score: 654; 100.0% identity (100.0% similar) in 97 aa overlap (1-97:1-97)

               10        20        30        40        50        60
pF1KE4 MDSSSSSSAAGLGAVDPQLQHFIEVETQKQRFQQLVHQMTELCWEKCMDKPGPKLDSRAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MDSSSSSSAAGLGAVDPQLQHFIEVETQKQRFQQLVHQMTELCWEKCMDKPGPKLDSRAE
               10        20        30        40        50        60

               70        80        90       
pF1KE4 ACFVNCVERFIDTSQFILNRLEQTQKSKPVFSESLSD
       :::::::::::::::::::::::::::::::::::::
CCDS14 ACFVNCVERFIDTSQFILNRLEQTQKSKPVFSESLSD
               70        80        90       

>>CCDS8357.2 TIMM8B gene_id:26521|Hs108|chr11             (98 aa)
 initn: 286 init1: 239 opt: 267  Z-score: 368.7  bits: 73.0 E(32554): 3.2e-14
Smith-Waterman score: 267; 46.5% identity (73.3% similar) in 86 aa overlap (3-86:10-95)

                      10         20        30        40        50  
pF1KE4        MDSSSSSSAAGLGAVDP-QLQHFIEVETQKQRFQQLVHQMTELCWEKCMDKPG
                .:   . : :: .:  .::... .: :: .:   ::.. ::::.::..:::
CCDS83 MRKHSCRKVASLRRTMAELGEADEAELQRLVAAEQQKAQFTAQVHHFMELCWDKCVEKPG
               10        20        30        40        50        60

             60        70        80         90       
pF1KE4 PKLDSRAEACFVNCVERFIDTSQFILNRLEQ-TQKSKPVFSESLSD
        .::::.: :. .::.:::::.  : .:. : .::           
CCDS83 NRLDSRTENCLSSCVDRFIDTTLAITSRFAQIVQKGGQ        
               70        80        90                




97 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 05:21:17 2016 done: Sun Nov  6 05:21:18 2016
 Total Scan time:  1.470 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]