FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1228, 317 aa
  1>>>pF1KE1228 317 - 317 aa - 317 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0635+/-0.000833; mu= 17.6400+/- 0.050
 mean_var=69.8448+/-13.823, 0's: 0 Z-trim(107.4): 21  B-trim: 53 in 1/49
 Lambda= 0.153464
 statistics sampled from 9568 (9574) to 9568 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.667), E-opt: 0.2 (0.294), width:  16
 Scan time:  2.230

The best scores are:                                      opt bits E(32554)
CCDS14469.1 TNMD gene_id:64102|Hs108|chrX          ( 317) 2230 502.6 1.7e-142
CCDS45051.1 LECT1 gene_id:11061|Hs108|chr13        ( 333)  706 165.2 6.5e-41
CCDS9437.1 LECT1 gene_id:11061|Hs108|chr13         ( 334)  696 163.0   3e-40


>>CCDS14469.1 TNMD gene_id:64102|Hs108|chrX               (317 aa)
 initn: 2230 init1: 2230 opt: 2230  Z-score: 2671.9  bits: 502.6 E(32554): 1.7e-142
Smith-Waterman score: 2230; 100.0% identity (100.0% similar) in 317 aa overlap (1-317:1-317)

               10        20        30        40        50        60
pF1KE1 MAKNPPENCEDCHILNAEAFKSKKICKSLKICGLVFGILALTLIVLFWGSKHFWPEVPKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MAKNPPENCEDCHILNAEAFKSKKICKSLKICGLVFGILALTLIVLFWGSKHFWPEVPKK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 AYDMEHTFYSNGEKKKIYMEIDPVTRTEIFRSGNGTDETLEVHDFKNGYTGIYFVGLQKC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 AYDMEHTFYSNGEKKKIYMEIDPVTRTEIFRSGNGTDETLEVHDFKNGYTGIYFVGLQKC
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 FIKTQIKVIPEFSEPEEEIDENEEITTTFFEQSVIWVPAEKPIENRDFLKNSKILEICDN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 FIKTQIKVIPEFSEPEEEIDENEEITTTFFEQSVIWVPAEKPIENRDFLKNSKILEICDN
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 VTMYWINPTLISVSELQDFEEEGEDLHFPANEKKGIEQNEQWVVPQVKVEKTRHARQASE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 VTMYWINPTLISVSELQDFEEEGEDLHFPANEKKGIEQNEQWVVPQVKVEKTRHARQASE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 EELPINDYTENGIEFDPMLDERGYCCIYCRRGNRYCRRVCEPLLGYYPYPYCYQGGRVIC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 EELPINDYTENGIEFDPMLDERGYCCIYCRRGNRYCRRVCEPLLGYYPYPYCYQGGRVIC
              250       260       270       280       290       300

              310       
pF1KE1 RVIMPCNWWVARMLGRV
       :::::::::::::::::
CCDS14 RVIMPCNWWVARMLGRV
              310       

>>CCDS45051.1 LECT1 gene_id:11061|Hs108|chr13             (333 aa)
 initn: 636 init1: 352 opt: 706  Z-score: 848.0  bits: 165.2 E(32554): 6.5e-41
Smith-Waterman score: 706; 36.1% identity (65.7% similar) in 324 aa overlap (6-317:15-333)

                        10          20        30        40         
pF1KE1          MAKNPPENCEDCH--ILNAEAFKSKKICKSLKICGLVFGILALTLIVLFWG
                     :.. : :      . . : ..  . ::. ..:.   :. :.    :
CCDS45 MTENSDKVPIALVGPDDVEFCSPPAYATLTVKPSSPARLLKVGAVVLISGAVLLLFGAIG
               10        20        30        40        50        60

      50        60        70        80        90       100         
pF1KE1 SKHFWPEVPKKAYDMEHTFYSNGEKKKIYMEIDPVTRTEIFRSGNGTDETLEVHDFKNGY
       . .::    .. :....:.  ::. .   ::::  .  : :. :.:..:.. :.::.:: 
CCDS45 AFYFWKGSDSHIYNVHYTMSINGKLQDGSMEIDAGNNLETFKMGSGAEEAIAVNDFQNGI
               70        80        90       100       110       120

     110       120        130        140          150       160    
pF1KE1 TGIYFVGLQKCFIKTQIKV-IPEFSE-PEEEID---ENEEITTTFFEQSVIWVPAEKPIE
       ::: :.: .::.::.:.:. ::: .   .. :.   :.. . . . :.:.::: ...:..
CCDS45 TGIRFAGGEKCYIKAQVKARIPEVGAVTKQSISSKLEGKIMPVKYEENSLIWVAVDQPVK
              130       140       150       160       170       180

          170       180       190       200       210          220 
pF1KE1 NRDFLKNSKILEICDNVTMYWINPTLISVSELQDFEEEGEDLHFPANEKK---GIEQNEQ
       . .:: .::.::.: .. ..:..::  .  :.:  ..:      :.. :.   : ..:  
CCDS45 DNSFL-SSKVLELCGDLPIFWLKPTYPK--EIQRERREVVRKIVPTTTKRPHSGPRSNPG
               190       200         210       220       230       

             230       240       250         260       270         
pF1KE1 WVVPQVKVEKTRHARQASEEELPINDYTENG--IEFDPMLDERGYCCIYCRRGNRYCRRV
         . ... :    ... :.   : : : ..:  . ::: ::..: ::: :::.  .:...
CCDS45 --AGRLNNETRPSVQEDSQAFNPDNPYHQEGESMTFDPRLDHEGICCIECRRSYTHCQKI
         240       250       260       270       280       290     

     280       290       300       310       
pF1KE1 CEPLLGYYPYPYCYQGGRVICRVIMPCNWWVARMLGRV
       :::: ::::.:: ::: :  :::::::.:::::.:: :
CCDS45 CEPLGGYYPWPYNYQGCRSACRVIMPCSWWVARILGMV
         300       310       320       330   

>>CCDS9437.1 LECT1 gene_id:11061|Hs108|chr13              (334 aa)
 initn: 648 init1: 364 opt: 696  Z-score: 836.0  bits: 163.0 E(32554): 3e-40
Smith-Waterman score: 696; 35.7% identity (65.5% similar) in 325 aa overlap (6-317:15-334)

                        10          20        30        40         
pF1KE1          MAKNPPENCEDCH--ILNAEAFKSKKICKSLKICGLVFGILALTLIVLFWG
                     :.. : :      . . : ..  . ::. ..:.   :. :.    :
CCDS94 MTENSDKVPIALVGPDDVEFCSPPAYATLTVKPSSPARLLKVGAVVLISGAVLLLFGAIG
               10        20        30        40        50        60

      50        60        70        80        90       100         
pF1KE1 SKHFWPEVPKKAYDMEHTFYSNGEKKKIYMEIDPVTRTEIFRSGNGTDETLEVHDFKNGY
       . .::    .. :....:.  ::. .   ::::  .  : :. :.:..:.. :.::.:: 
CCDS94 AFYFWKGSDSHIYNVHYTMSINGKLQDGSMEIDAGNNLETFKMGSGAEEAIAVNDFQNGI
               70        80        90       100       110       120

     110       120        130        140          150       160    
pF1KE1 TGIYFVGLQKCFIKTQIKV-IPEFSE-PEEEID---ENEEITTTFFEQSVIWVPAEKPIE
       ::: :.: .::.::.:.:. ::: .   .. :.   :.. . . . :.:.::: ...:..
CCDS94 TGIRFAGGEKCYIKAQVKARIPEVGAVTKQSISSKLEGKIMPVKYEENSLIWVAVDQPVK
              130       140       150       160       170       180

          170       180       190       200       210          220 
pF1KE1 NRDFLKNSKILEICDNVTMYWINPTLISVSELQDFEEEGEDLHFPANEKK---GIEQNEQ
       . .:: .::.::.: .. ..:..::  .  :.:  ..:      :.. :.   : ..:  
CCDS94 DNSFL-SSKVLELCGDLPIFWLKPTYPK--EIQRERREVVRKIVPTTTKRPHSGPRSNPG
               190       200         210       220       230       

             230       240       250          260       270        
pF1KE1 WVVPQVKVEKTRHARQASEEELPINDYTEN---GIEFDPMLDERGYCCIYCRRGNRYCRR
         . ... :    ... :.   : : : ..   .. ::: ::..: ::: :::.  .:..
CCDS94 --AGRLNNETRPSVQEDSQAFNPDNPYHQQEGESMTFDPRLDHEGICCIECRRSYTHCQK
         240       250       260       270       280       290     

      280       290       300       310       
pF1KE1 VCEPLLGYYPYPYCYQGGRVICRVIMPCNWWVARMLGRV
       .:::: ::::.:: ::: :  :::::::.:::::.:: :
CCDS94 ICEPLGGYYPWPYNYQGCRSACRVIMPCSWWVARILGMV
         300       310       320       330    




317 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 12:44:48 2016 done: Sun Nov  6 12:44:48 2016
 Total Scan time:  2.230 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]