Result of FASTA (omim) for
pFN21AB7580
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7580, 284 aa
1>>>pF1KB7580 284 - 284 aa - 284 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.2673+/-0.000372; mu= 4.4467+/- 0.023
mean_var=247.9516+/-49.990, 0's: 0 Z-trim(122.1): 217 B-trim: 28 in 1/55
Lambda= 0.081450
statistics sampled from 39391 (39630) to 39391 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.786), E-opt: 0.2 (0.465), width: 16
Scan time: 8.480
The best scores are: opt bits E(85289)
NP_005184 (OMIM: 300025) homeobox protein CDX-4 [H ( 284) 1949 241.2 1.6e-63
NP_001795 (OMIM: 600746) homeobox protein CDX-1 [H ( 265) 572 79.4 8e-15
NP_001256 (OMIM: 600297) homeobox protein CDX-2 [H ( 313) 453 65.5 1.4e-10
XP_011533177 (OMIM: 600297) PREDICTED: homeobox pr ( 321) 397 58.9 1.4e-08
XP_011533180 (OMIM: 600297) PREDICTED: homeobox pr ( 204) 389 57.8 2e-08
XP_011533181 (OMIM: 600297) PREDICTED: homeobox pr ( 196) 388 57.6 2.1e-08
XP_011533179 (OMIM: 600297) PREDICTED: homeobox pr ( 273) 330 51.0 3e-06
NP_061975 (OMIM: 142952) homeobox protein Hox-A5 [ ( 270) 326 50.5 4.1e-06
NP_004518 (OMIM: 214300,600147) homeobox protein M ( 254) 295 46.8 4.9e-05
NP_055028 (OMIM: 142982) homeobox protein Hox-D9 [ ( 352) 297 47.2 5.2e-05
NP_002138 (OMIM: 142960) homeobox protein Hox-B5 [ ( 269) 286 45.8 0.00011
NP_705897 (OMIM: 142974) homeobox protein Hox-C4 [ ( 264) 285 45.7 0.00011
NP_055435 (OMIM: 142974) homeobox protein Hox-C4 [ ( 264) 285 45.7 0.00011
XP_011533178 (OMIM: 600297) PREDICTED: homeobox pr ( 281) 279 45.0 0.00019
NP_055436 (OMIM: 142981) homeobox protein Hox-D4 [ ( 255) 274 44.4 0.00027
NP_006726 (OMIM: 604685,612290) homeobox protein H ( 376) 276 44.8 0.0003
NP_002132 (OMIM: 142953) homeobox protein Hox-A4 [ ( 320) 274 44.5 0.00032
XP_005257343 (OMIM: 142963) PREDICTED: homeobox pr ( 242) 265 43.3 0.00054
NP_076920 (OMIM: 142965) homeobox protein Hox-B4 [ ( 251) 264 43.2 0.00061
NP_061824 (OMIM: 142957) homeobox protein Hox-A10 ( 410) 268 43.9 0.00061
NP_008827 (OMIM: 142950) homeobox protein Hox-A7 [ ( 230) 263 43.0 0.00062
NP_008828 (OMIM: 142971) homeobox protein Hox-C9 [ ( 260) 260 42.7 0.00086
XP_016880053 (OMIM: 142963) PREDICTED: homeobox pr ( 243) 259 42.6 0.00089
NP_076921 (OMIM: 142963) homeobox protein Hox-B8 [ ( 243) 259 42.6 0.00089
NP_076919 (OMIM: 142951) homeobox protein Hox-A6 [ ( 233) 258 42.5 0.00094
NP_005915 (OMIM: 600535) homeobox protein MOX-2 [H ( 304) 260 42.8 0.00095
NP_710160 (OMIM: 142972) homeobox protein Hox-C6 i ( 153) 254 41.8 0.00098
NP_061826 (OMIM: 142973) homeobox protein Hox-C5 [ ( 222) 257 42.3 0.00099
XP_005257341 (OMIM: 142961) PREDICTED: homeobox pr ( 224) 256 42.2 0.0011
NP_061825 (OMIM: 142961) homeobox protein Hox-B6 [ ( 224) 256 42.2 0.0011
XP_005257340 (OMIM: 142961) PREDICTED: homeobox pr ( 224) 256 42.2 0.0011
NP_004494 (OMIM: 142972) homeobox protein Hox-C6 i ( 235) 256 42.2 0.0011
XP_011523029 (OMIM: 142961) PREDICTED: homeobox pr ( 288) 256 42.3 0.0013
NP_689952 (OMIM: 142956) homeobox protein Hox-A9 [ ( 272) 250 41.6 0.002
XP_005249788 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 254 42.3 0.002
XP_006715778 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 254 42.3 0.002
XP_011513645 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 254 42.3 0.002
NP_705895 (OMIM: 142954) homeobox protein Hox-A3 i ( 443) 254 42.3 0.002
XP_005249787 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 254 42.3 0.002
NP_109377 (OMIM: 142954) homeobox protein Hox-A3 i ( 443) 254 42.3 0.002
XP_005249789 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 254 42.3 0.002
NP_067015 (OMIM: 142986) homeobox protein Hox-D11 ( 338) 251 41.8 0.0021
NP_004493 (OMIM: 142962) homeobox protein Hox-B7 [ ( 217) 246 41.0 0.0024
NP_059105 (OMIM: 605560) homeobox protein Hox-C10 ( 342) 249 41.6 0.0025
NP_835221 (OMIM: 600029) homeobox protein DLX-1 is ( 255) 246 41.1 0.0027
NP_001035091 (OMIM: 214300,600147) homeobox protei ( 139) 240 40.1 0.0029
NP_005514 (OMIM: 142958,605432) homeobox protein H ( 313) 246 41.2 0.003
NP_005211 (OMIM: 104510,190320,600525) homeobox pr ( 287) 245 41.0 0.0031
NP_002135 (OMIM: 142968,614744) homeobox protein H ( 301) 243 40.8 0.0038
NP_076922 (OMIM: 142964) homeobox protein Hox-B9 [ ( 250) 235 39.8 0.0064
>>NP_005184 (OMIM: 300025) homeobox protein CDX-4 [Homo (284 aa)
initn: 1949 init1: 1949 opt: 1949 Z-score: 1261.2 bits: 241.2 E(85289): 1.6e-63
Smith-Waterman score: 1949; 100.0% identity (100.0% similar) in 284 aa overlap (1-284:1-284)
10 20 30 40 50 60
pF1KB7 MYGSCLLEKEAGMYPGTLMSPGGDGTAGTGGTGGGGSPMPASNFAAAPAFSHYMGYPHMP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MYGSCLLEKEAGMYPGTLMSPGGDGTAGTGGTGGGGSPMPASNFAAAPAFSHYMGYPHMP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 SMDPHWPSLGVWGSPYSPPREDWSVYPGPSSTMGTVPVNDVTSSPAAFCSTDYSNLGPVG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 SMDPHWPSLGVWGSPYSPPREDWSVYPGPSSTMGTVPVNDVTSSPAAFCSTDYSNLGPVG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 GGTSGSSLPGQAGGSLVPTDAGAAKASSPSRSRHSPYAWMRKTVQVTGKTRTKEKYRVVY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 GGTSGSSLPGQAGGSLVPTDAGAAKASSPSRSRHSPYAWMRKTVQVTGKTRTKEKYRVVY
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 TDHQRLELEKEFHCNRYITIQRKSELAVNLGLSERQVKIWFQNRRAKERKMIKKKISQFE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 TDHQRLELEKEFHCNRYITIQRKSELAVNLGLSERQVKIWFQNRRAKERKMIKKKISQFE
190 200 210 220 230 240
250 260 270 280
pF1KB7 NSGGSVQSDSDSISPGELPNTFFTTPSAVRGFQPIEIQQVIVSE
::::::::::::::::::::::::::::::::::::::::::::
NP_005 NSGGSVQSDSDSISPGELPNTFFTTPSAVRGFQPIEIQQVIVSE
250 260 270 280
>>NP_001795 (OMIM: 600746) homeobox protein CDX-1 [Homo (265 aa)
initn: 604 init1: 394 opt: 572 Z-score: 387.1 bits: 79.4 E(85289): 8e-15
Smith-Waterman score: 613; 45.1% identity (66.4% similar) in 244 aa overlap (1-238:1-219)
10 20 30 40 50
pF1KB7 MYGSCLLEKEAGMYPGTLMSPGGDGTAGTGGTGGGGSPMPASNFAAAPAFSHYMGYPHM-
:: . .:.:.. .::: :. .. : : . : : : : : . . .: :.
NP_001 MYVGYVLDKDSPVYPG----PARPASLGLGPQAYG-PPAPP---PAPPQYPDFSSYSHVE
10 20 30 40 50
60 70 80 90 100 110
pF1KB7 PSMDPHWPSLGVWGSPYSPPREDWSVYPGPSSTMGTVPVNDVTSSPAAFCSTDYSNLGPV
:. : :. .::.:. :..::.. ::. . .:. .:::.. ...::
NP_001 PAPAP--PT--AWGAPFPAPKDDWAAAYGPGPA---APA----ASPASLAFGPPPDFSPV
60 70 80 90 100
120 130 140 150 160 170
pF1KB7 GGGTSGSSLPGQAGGSLVPTDAGAAKASSPSRSRHSPYAWMRKTVQV-----TGKTRTKE
. :: . : :. .: . :::. .: .:: :::..: . .::::::.
NP_001 ------PAPPGPGPGLLAQPLGGPGTPSSPGAQRPTPYEWMRRSVAAGGGGGSGKTRTKD
110 120 130 140 150
180 190 200 210 220 230
pF1KB7 KYRVVYTDHQRLELEKEFHCNRYITIQRKSELAVNLGLSERQVKIWFQNRRAKERKMIKK
::::::::::::::::::: .:::::.::::::.::::.:::::::::::::::::. ::
NP_001 KYRVVYTDHQRLELEKEFHYSRYITIRRKSELAANLGLTERQVKIWFQNRRAKERKVNKK
160 170 180 190 200 210
240 250 260 270 280
pF1KB7 KISQFENSGGSVQSDSDSISPGELPNTFFTTPSAVRGFQPIEIQQVIVSE
: .:
NP_001 KQQQQQPPQPPMAHDITATPAGPSLGGLCPSNTSLLATSSPMPVKEEFLP
220 230 240 250 260
>>NP_001256 (OMIM: 600297) homeobox protein CDX-2 [Homo (313 aa)
initn: 551 init1: 384 opt: 453 Z-score: 310.7 bits: 65.5 E(85289): 1.4e-10
Smith-Waterman score: 549; 39.9% identity (62.7% similar) in 303 aa overlap (1-283:1-293)
10 20 30 40 50
pF1KB7 MYGSCLLEKEAGMYPGTLMSPGGDGTAGTGGTGGGGSP-MPASNFAAAPAFSHYMGYPHM
:: : ::.:...:::... :: . : . .. : . . . ::: : . . .
NP_001 MYVSYLLDKDVSMYPSSVRHSGGLNLAPQNFVSPPQYPDYGGYHVAAAAAAAANLDSAQS
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB7 PSMDPHWPSLGVWGSPYSPPREDWSVY-PGPSSTMGTVPVNDVTS-SPAA---FCS-TDY
:. : ::. ..:.: ::::. : :: ... ... .. ... :::: . : .::
NP_001 PG--PSWPA--AYGAPL---REDWNGYAPGGAAAAANAVAHGLNGGSPAAAMGYSSPADY
70 80 90 100 110
120 130 140 150 160
pF1KB7 S-NLGPVGGGTSGSSLPGQAGG---SLVPTDAG-----AAKASSPSRSRHSPYAWMRKTV
. : .. :. :.: .: : : ::. ::. .:.. :::: .
NP_001 HPHHHPHHHPHHPAAAPSCASGLLQTLNPGPPGPAATAAAEQLSPGGQRRNLCEWMRKPA
120 130 140 150 160 170
170 180 190 200 210 220
pF1KB7 QVT-G---KTRTKEKYRVVYTDHQRLELEKEFHCNRYITIQRKSELAVNLGLSERQVKIW
: . : :::::.::::::::::::::::::: .:::::.::.:::..:::::::::::
NP_001 QQSLGSQVKTRTKDKYRVVYTDHQRLELEKEFHYSRYITIRRKAELAATLGLSERQVKIW
180 190 200 210 220 230
230 240 250 260 270 280
pF1KB7 FQNRRAKERKMIKKKISQFENSGGSVQSDSDSISPGELPNTFFTTPSAVRGFQPIEIQQV
::::::::::. :::..: ... : :. . ..: . .:. :.
NP_001 FQNRRAKERKINKKKLQQQQQQQPPQPPPPPPQPPQPQPGPLRSVPEPL---SPVSSLQA
240 250 260 270 280 290
pF1KB7 IVSE
::
NP_001 SVSGSVPGVLGPTGGVLNPTVTQ
300 310
>>XP_011533177 (OMIM: 600297) PREDICTED: homeobox protei (321 aa)
initn: 551 init1: 384 opt: 397 Z-score: 275.0 bits: 58.9 E(85289): 1.4e-08
Smith-Waterman score: 530; 39.8% identity (61.6% similar) in 294 aa overlap (1-266:1-287)
10 20 30 40 50
pF1KB7 MYGSCLLEKEAGMYPGTLMSPGGDGTAGTGGTGGGGSP-MPASNFAAAPAFSHYMGYPHM
:: : ::.:...:::... :: . : . .. : . . . ::: : . . .
XP_011 MYVSYLLDKDVSMYPSSVRHSGGLNLAPQNFVSPPQYPDYGGYHVAAAAAAAANLDSAQS
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB7 PSMDPHWPSLGVWGSPYSPPREDWSVY-PGPSSTMGTVPVNDVTS-SPAA---FCS-TDY
:. : ::. ..:.: ::::. : :: ... ... .. ... :::: . : .::
XP_011 PG--PSWPA--AYGAPL---REDWNGYAPGGAAAAANAVAHGLNGGSPAAAMGYSSPADY
70 80 90 100 110
120 130 140 150 160
pF1KB7 S-NLGPVGGGTSGSSLPGQAGG---SLVPTDAG-----AAKASSPSRSRHSPYAWMRKTV
. : .. :. :.: .: : : ::. ::. .:.. :::: .
XP_011 HPHHHPHHHPHHPAAAPSCASGLLQTLNPGPPGPAATAAAEQLSPGGQRRNLCEWMRKPA
120 130 140 150 160 170
170 180 190 200 210
pF1KB7 Q------------VTGKTRTKEKYRVVYTDHQRLELEKEFHCNRYITIQRKSELAVNLGL
: : :::::.::::::::::::::::::: .:::::.::.:::..:::
XP_011 QQSLGSQALTSPSSTVKTRTKDKYRVVYTDHQRLELEKEFHYSRYITIRRKAELAATLGL
180 190 200 210 220 230
220 230 240 250 260 270
pF1KB7 SERQVKIWFQNRRAKERKMIKKKISQFENSGGSVQSDSDSISPGELPNTFFTTPSAVRGF
::::::::::::::::::. :::..: ... : :. . ..:
XP_011 SERQVKIWFQNRRAKERKINKKKLQQQQQQQPPQPPPPPPQPPQPQPGPLRSVPEPLSPV
240 250 260 270 280 290
280
pF1KB7 QPIEIQQVIVSE
XP_011 SSLQASVPGSVPGVLGPTGGVLNPTVTQ
300 310 320
>>XP_011533180 (OMIM: 600297) PREDICTED: homeobox protei (204 aa)
initn: 403 init1: 384 opt: 389 Z-score: 272.3 bits: 57.8 E(85289): 2e-08
Smith-Waterman score: 389; 63.0% identity (79.0% similar) in 100 aa overlap (167-266:71-170)
140 150 160 170 180 190
pF1KB7 VPTDAGAAKASSPSRSRHSPYAWMRKTVQVTGKTRTKEKYRVVYTDHQRLELEKEFHCNR
: :::::.::::::::::::::::::: .:
XP_011 CAHARESPGGNAADRGEGHRSASALTSPSSTVKTRTKDKYRVVYTDHQRLELEKEFHYSR
50 60 70 80 90 100
200 210 220 230 240 250
pF1KB7 YITIQRKSELAVNLGLSERQVKIWFQNRRAKERKMIKKKISQFENSGGSVQSDSDSISPG
::::.::.:::..:::::::::::::::::::::. :::..: ... :
XP_011 YITIRRKAELAATLGLSERQVKIWFQNRRAKERKINKKKLQQQQQQQPPQPPPPPPQPPQ
110 120 130 140 150 160
260 270 280
pF1KB7 ELPNTFFTTPSAVRGFQPIEIQQVIVSE
:. . ..:
XP_011 PQPGPLRSVPEPLSPVSSLQASVPGSVPGVLGPTGGVLNPTVTQ
170 180 190 200
>>XP_011533181 (OMIM: 600297) PREDICTED: homeobox protei (196 aa)
initn: 403 init1: 384 opt: 388 Z-score: 271.8 bits: 57.6 E(85289): 2.1e-08
Smith-Waterman score: 388; 63.3% identity (79.6% similar) in 98 aa overlap (169-266:65-162)
140 150 160 170 180 190
pF1KB7 TDAGAAKASSPSRSRHSPYAWMRKTVQVTGKTRTKEKYRVVYTDHQRLELEKEFHCNRYI
:::::.::::::::::::::::::: .:::
XP_011 HRFLRHCAHARESPGGNAADRGEGHRSASVKTRTKDKYRVVYTDHQRLELEKEFHYSRYI
40 50 60 70 80 90
200 210 220 230 240 250
pF1KB7 TIQRKSELAVNLGLSERQVKIWFQNRRAKERKMIKKKISQFENSGGSVQSDSDSISPGEL
::.::.:::..:::::::::::::::::::::. :::..: ... :
XP_011 TIRRKAELAATLGLSERQVKIWFQNRRAKERKINKKKLQQQQQQQPPQPPPPPPQPPQPQ
100 110 120 130 140 150
260 270 280
pF1KB7 PNTFFTTPSAVRGFQPIEIQQVIVSE
:. . ..:
XP_011 PGPLRSVPEPLSPVSSLQASVPGSVPGVLGPTGGVLNPTVTQ
160 170 180 190
>>XP_011533179 (OMIM: 600297) PREDICTED: homeobox protei (273 aa)
initn: 433 init1: 254 opt: 330 Z-score: 233.3 bits: 51.0 E(85289): 3e-06
Smith-Waterman score: 426; 39.2% identity (63.1% similar) in 268 aa overlap (1-248:1-258)
10 20 30 40 50
pF1KB7 MYGSCLLEKEAGMYPGTLMSPGGDGTAGTGGTGGGGSP-MPASNFAAAPAFSHYMGYPHM
:: : ::.:...:::... :: . : . .. : . . . ::: : . . .
XP_011 MYVSYLLDKDVSMYPSSVRHSGGLNLAPQNFVSPPQYPDYGGYHVAAAAAAAANLDSAQS
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB7 PSMDPHWPSLGVWGSPYSPPREDWSVY-PGPSSTMGTVPVNDVTS-SPAA---FCS-TDY
:. : ::. ..:.: ::::. : :: ... ... .. ... :::: . : .::
XP_011 PG--PSWPA--AYGAPL---REDWNGYAPGGAAAAANAVAHGLNGGSPAAAMGYSSPADY
70 80 90 100 110
120 130 140 150 160
pF1KB7 S-NLGPVGGGTSGSSLPGQAGG---SLVPTDAG-----AAKASSPSRSRHSPYAWMRKTV
. : .. :. :.: .: : : ::. ::. .:.. :::: .
XP_011 HPHHHPHHHPHHPAAAPSCASGLLQTLNPGPPGPAATAAAEQLSPGGQRRNLCEWMRKPA
120 130 140 150 160 170
170 180 190 200 210 220
pF1KB7 QVT-G---KTRTKEKYRVVYTDHQRLELEKEFHCNRYITIQRKSELAVNLGLSERQVKIW
: . : :::::.::::::::::::::::::: .:::::.::.:::..:::::: .:
XP_011 QQSLGSQVKTRTKDKYRVVYTDHQRLELEKEFHYSRYITIRRKAELAATLGLSER-LKSG
180 190 200 210 220 230
230 240 250 260 270 280
pF1KB7 FQNRRAKERKMIKKKISQFENSGGSVQSDSDSISPGELPNTFFTTPSAVRGFQPIEIQQV
: : :..:. . . : ::..: .:
XP_011 F--RTAEQRRGKSTRRSCSSNSSSSHHSRLRRHHSLPSLSQVL
240 250 260 270
>>NP_061975 (OMIM: 142952) homeobox protein Hox-A5 [Homo (270 aa)
initn: 279 init1: 232 opt: 326 Z-score: 230.8 bits: 50.5 E(85289): 4.1e-06
Smith-Waterman score: 336; 35.8% identity (56.7% similar) in 240 aa overlap (22-245:51-267)
10 20 30 40
pF1KB7 MYGSCLLEKEAGMYPGTLMSPGGDGTAGTGGTGGGGSPMPASNFAA----A
: : ..: .:.: :: : ..:: :
NP_061 LHNYGDHSSVSEQFRDSASMHSGRYGYGYNGMDLSVGRSGSGHFGSGERARSYAASASAA
30 40 50 60 70 80
50 60 70 80 90 100
pF1KB7 PAFSHYMGYPHMPSMDPHWPSLGVWGSPYSPPREDWSVYPGPSSTMGTVPVNDVTSSPAA
:: .: .:. . : :: : .: :.:.: :....: .:
NP_061 PAEPRY----SQPATSTH--------SPQPDPLPCSAVAPSPGSDSHHGGKNSLSNSSGA
90 100 110 120
110 120 130 140 150
pF1KB7 FCSTDYSNLGPVGGGTSGSSLPGQAGGSLVPTDAGAAKASSPSRSRHSP--------YAW
:.: .:.: :: : . .: . :: :.. .. ..:. :: : :
NP_061 --SAD-------AGSTHISSREGVGTASGAEEDAPASSEQASAQSEPSPAPPAQPQIYPW
130 140 150 160 170
160 170 180 190 200 210
pF1KB7 MRKTVQVT----GKTRTKEKYRVVYTDHQRLELEKEFHCNRYITIQRKSELAVNLGLSER
::: .... : . : . :..:: .: :::::::: :::.: .:. :.: : ::::
NP_061 MRK-LHISHDNIGGPEGK-RARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSER
180 190 200 210 220 230
220 230 240 250 260 270
pF1KB7 QVKIWFQNRRAKERKMIKKKISQFENSGGSVQSDSDSISPGELPNTFFTTPSAVRGFQPI
:.:::::::: : .: : : .. .::.
NP_061 QIKIWFQNRRMKWKKDNKLKSMSMAAAGGAFRP
240 250 260 270
>>NP_004518 (OMIM: 214300,600147) homeobox protein MOX-1 (254 aa)
initn: 238 init1: 176 opt: 295 Z-score: 211.4 bits: 46.8 E(85289): 4.9e-05
Smith-Waterman score: 295; 32.3% identity (52.0% similar) in 269 aa overlap (4-255:7-251)
10 20 30 40 50
pF1KB7 MYGSCL--LEKEAGMYPGTLMSPGGDGTAGTGGTGGGGSPMPASNFAAAPAFSHYMG
::. :. : .. : : .: ..:. :..: : .: : :
NP_004 MDPAASSCMRSLQPPAPVW-GCLRNPHSEGN---GASGLPHYPPTPFSFHQKPDF-----
10 20 30 40 50
60 70 80 90 100 110
pF1KB7 YPHMPSMDPHWPSLGVWGSPYSPPREDWSV---YPG-PSSTMGTVPVNDVTSSPAAFCST
. : . . . ..:.: :.:. .:. :.: ::.:. :
NP_004 LATATAAYPDFSASCLAATPHSLPQEEHIFTEQHPAFPQSPNWHFPVSDARRRP------
60 70 80 90 100
120 130 140 150 160
pF1KB7 DYSNLGPVGG----GTSGSSL------PGQAGGSLVPTDAGAAKASSPSRSRHSPYAWMR
: ::.:: :::. .: ::. : : : . : :: :.. : :
NP_004 ---NSGPAGGSKEMGTSSLGLVDTTGGPGDDYGVLGSTANETEKKSSRRRKESSDNQENR
110 120 130 140 150 160
170 180 190 200 210 220
pF1KB7 KTVQVTGKTRTKEKYRVVYTDHQRLELEKEFHCNRYITIQRKSELAVNLGLSERQVKIWF
. ..:.: : :...: .: ::: :: . :.: :. :.:::: :::::::.::
NP_004 GKPEGSSKAR---KERTAFTKEQLRELEAEFAHHNYLTRLRRYEIAVNLDLSERQVKVWF
170 180 190 200 210
230 240 250 260 270 280
pF1KB7 QNRRAKERKMIKKKISQFENSGGSVQSDSDSI-SPGELPNTFFTTPSAVRGFQPIEIQQV
:::: : ... : .: . .:. :.:: ::
NP_004 QNRRMKWKRV---KGGQPISPNGQDPEDGDSTASPSSE
220 230 240 250
pF1KB7 IVSE
>>NP_055028 (OMIM: 142982) homeobox protein Hox-D9 [Homo (352 aa)
initn: 441 init1: 215 opt: 297 Z-score: 211.0 bits: 47.2 E(85289): 5.2e-05
Smith-Waterman score: 307; 33.2% identity (52.0% similar) in 244 aa overlap (10-235:111-347)
10 20 30
pF1KB7 MYGSCLLEKEAGMYPGTLMSP--GGDGTAGTGGTGGGGS
: : : . : : : : :: :: ::::.
NP_055 AVPSQPPAAAAMSGLYHPYVPPPPLAASASEPGRYVRSWMEPLPGFPGGAGGGGGGGGGG
90 100 110 120 130 140
40 50 60 70 80 90
pF1KB7 PM--PASNFAAAPAFSHYMGYPHM-----PSMDPHWPSLGVWGSPYSPPREDWSVYPGPS
: :. . .. :: :. :. : . . : : . :: .
NP_055 PGRGPSPGPSGPANGRHYGIKPETRAAPAPATAASTTSSSSTSLSSSSKRTECSVARESQ
150 160 170 180 190 200
100 110 120 130 140
pF1KB7 STMGT-VPVNDVTSSPAAFCSTDYSNLGPVGG-----GTSGSSLPGQAGGSLVP---TDA
.. : :. . :: . .. :: .: ::.::: :. . .:
NP_055 GSSGPEFSCNSFLQEKAAAAT---GGTGPGAGIGAATGTGGSSEPSACSDHPIPGCSLKE
210 220 230 240 250
150 160 170 180 190 200
pF1KB7 GAAKASSPSRSRHSPYAWMRKTVQVTGKTRTKEKYRVVYTDHQRLELEKEFHCNRYITIQ
. :.:.... .: . ... :. .: : :: .: ::::::: : :.: .
NP_055 EEKQHSQPQQQQLDPNNPAANWIHA----RSTRKKRCPYTKYQTLELEKEFLFNMYLTRD
260 270 280 290 300 310
210 220 230 240 250 260
pF1KB7 RKSELAVNLGLSERQVKIWFQNRRAKERKMIKKKISQFENSGGSVQSDSDSISPGELPNT
:. :.: :.:.:::::::::::: : .:: :.:
NP_055 RRYEVARILNLTERQVKIWFQNRRMKMKKMSKEKCPKGD
320 330 340 350
270 280
pF1KB7 FFTTPSAVRGFQPIEIQQVIVSE
284 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 04:40:54 2016 done: Sun Nov 6 04:40:56 2016
Total Scan time: 8.480 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]