FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7580, 284 aa
  1>>>pF1KB7580 284 - 284 aa - 284 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.1244+/-0.000882; mu= 5.0435+/- 0.054
 mean_var=230.5985+/-48.068, 0's: 0 Z-trim(114.6): 145  B-trim: 821 in 1/51
 Lambda= 0.084459
 statistics sampled from 14953 (15115) to 14953 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.781), E-opt: 0.2 (0.464), width:  16
 Scan time:  2.550

The best scores are:                                      opt bits E(32554)
CCDS14424.1 CDX4 gene_id:1046|Hs108|chrX           ( 284) 1949 249.5   2e-66
CCDS4304.1 CDX1 gene_id:1044|Hs108|chr5            ( 265)  572 81.7 6.2e-16
CCDS9328.1 CDX2 gene_id:1045|Hs108|chr13           ( 313)  448 66.7 2.5e-11


>>CCDS14424.1 CDX4 gene_id:1046|Hs108|chrX                (284 aa)
 initn: 1949 init1: 1949 opt: 1949  Z-score: 1305.9  bits: 249.5 E(32554): 2e-66
Smith-Waterman score: 1949; 100.0% identity (100.0% similar) in 284 aa overlap (1-284:1-284)

               10        20        30        40        50        60
pF1KB7 MYGSCLLEKEAGMYPGTLMSPGGDGTAGTGGTGGGGSPMPASNFAAAPAFSHYMGYPHMP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MYGSCLLEKEAGMYPGTLMSPGGDGTAGTGGTGGGGSPMPASNFAAAPAFSHYMGYPHMP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 SMDPHWPSLGVWGSPYSPPREDWSVYPGPSSTMGTVPVNDVTSSPAAFCSTDYSNLGPVG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 SMDPHWPSLGVWGSPYSPPREDWSVYPGPSSTMGTVPVNDVTSSPAAFCSTDYSNLGPVG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 GGTSGSSLPGQAGGSLVPTDAGAAKASSPSRSRHSPYAWMRKTVQVTGKTRTKEKYRVVY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 GGTSGSSLPGQAGGSLVPTDAGAAKASSPSRSRHSPYAWMRKTVQVTGKTRTKEKYRVVY
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 TDHQRLELEKEFHCNRYITIQRKSELAVNLGLSERQVKIWFQNRRAKERKMIKKKISQFE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 TDHQRLELEKEFHCNRYITIQRKSELAVNLGLSERQVKIWFQNRRAKERKMIKKKISQFE
              190       200       210       220       230       240

              250       260       270       280    
pF1KB7 NSGGSVQSDSDSISPGELPNTFFTTPSAVRGFQPIEIQQVIVSE
       ::::::::::::::::::::::::::::::::::::::::::::
CCDS14 NSGGSVQSDSDSISPGELPNTFFTTPSAVRGFQPIEIQQVIVSE
              250       260       270       280    

>>CCDS4304.1 CDX1 gene_id:1044|Hs108|chr5                 (265 aa)
 initn: 604 init1: 394 opt: 572  Z-score: 399.5  bits: 81.7 E(32554): 6.2e-16
Smith-Waterman score: 613; 45.1% identity (66.4% similar) in 244 aa overlap (1-238:1-219)

               10        20        30        40        50          
pF1KB7 MYGSCLLEKEAGMYPGTLMSPGGDGTAGTGGTGGGGSPMPASNFAAAPAFSHYMGYPHM-
       :: . .:.:.. .:::    :.  .. : :  . :  : :     : : .  . .: :. 
CCDS43 MYVGYVLDKDSPVYPG----PARPASLGLGPQAYG-PPAPP---PAPPQYPDFSSYSHVE
               10            20        30            40        50  

      60        70        80        90       100       110         
pF1KB7 PSMDPHWPSLGVWGSPYSPPREDWSVYPGPSSTMGTVPVNDVTSSPAAFCSTDYSNLGPV
       :.  :  :.  .::.:.  :..::..  ::. .   .:.    .:::..      ...::
CCDS43 PAPAP--PT--AWGAPFPAPKDDWAAAYGPGPA---APA----ASPASLAFGPPPDFSPV
                 60        70        80               90       100 

     120       130       140       150       160            170    
pF1KB7 GGGTSGSSLPGQAGGSLVPTDAGAAKASSPSRSRHSPYAWMRKTVQV-----TGKTRTKE
              . :: . : :.   .: .  :::. .: .:: :::..: .     .::::::.
CCDS43 ------PAPPGPGPGLLAQPLGGPGTPSSPGAQRPTPYEWMRRSVAAGGGGGSGKTRTKD
                   110       120       130       140       150     

          180       190       200       210       220       230    
pF1KB7 KYRVVYTDHQRLELEKEFHCNRYITIQRKSELAVNLGLSERQVKIWFQNRRAKERKMIKK
       ::::::::::::::::::: .:::::.::::::.::::.:::::::::::::::::. ::
CCDS43 KYRVVYTDHQRLELEKEFHYSRYITIRRKSELAANLGLTERQVKIWFQNRRAKERKVNKK
         160       170       180       190       200       210     

          240       250       260       270       280    
pF1KB7 KISQFENSGGSVQSDSDSISPGELPNTFFTTPSAVRGFQPIEIQQVIVSE
       : .:                                              
CCDS43 KQQQQQPPQPPMAHDITATPAGPSLGGLCPSNTSLLATSSPMPVKEEFLP
         220       230       240       250       260     

>>CCDS9328.1 CDX2 gene_id:1045|Hs108|chr13                (313 aa)
 initn: 551 init1: 384 opt: 448  Z-score: 316.9  bits: 66.7 E(32554): 2.5e-11
Smith-Waterman score: 544; 40.9% identity (63.6% similar) in 286 aa overlap (1-266:1-279)

               10        20        30         40        50         
pF1KB7 MYGSCLLEKEAGMYPGTLMSPGGDGTAGTGGTGGGGSP-MPASNFAAAPAFSHYMGYPHM
       :: : ::.:...:::...   :: . :  . ..    : . . . ::: : .  .   . 
CCDS93 MYVSYLLDKDVSMYPSSVRHSGGLNLAPQNFVSPPQYPDYGGYHVAAAAAAAANLDSAQS
               10        20        30        40        50        60

      60        70        80         90       100           110    
pF1KB7 PSMDPHWPSLGVWGSPYSPPREDWSVY-PGPSSTMGTVPVNDVTS-SPAA---FCS-TDY
       :.  : ::.  ..:.:    ::::. : :: ... ... .. ... ::::   . : .::
CCDS93 PG--PSWPA--AYGAPL---REDWNGYAPGGAAAAANAVAHGLNGGSPAAAMGYSSPADY
                   70           80        90       100       110   

            120       130          140            150       160    
pF1KB7 S-NLGPVGGGTSGSSLPGQAGG---SLVPTDAG-----AAKASSPSRSRHSPYAWMRKTV
         .  :       .. :. :.:   .: :   :     ::.  ::. .:..   :::: .
CCDS93 HPHHHPHHHPHHPAAAPSCASGLLQTLNPGPPGPAATAAAEQLSPGGQRRNLCEWMRKPA
           120       130       140       150       160       170   

              170       180       190       200       210       220
pF1KB7 QVT-G---KTRTKEKYRVVYTDHQRLELEKEFHCNRYITIQRKSELAVNLGLSERQVKIW
       : . :   :::::.::::::::::::::::::: .:::::.::.:::..:::::::::::
CCDS93 QQSLGSQVKTRTKDKYRVVYTDHQRLELEKEFHYSRYITIRRKAELAATLGLSERQVKIW
           180       190       200       210       220       230   

              230       240       250       260       270       280
pF1KB7 FQNRRAKERKMIKKKISQFENSGGSVQSDSDSISPGELPNTFFTTPSAVRGFQPIEIQQV
       ::::::::::. :::..: ...            :   :. . ..:              
CCDS93 FQNRRAKERKINKKKLQQQQQQQPPQPPPPPPQPPQPQPGPLRSVPEPLSPVSSLQASVP
           240       250       260       270       280       290   

                           
pF1KB7 IVSE                
                           
CCDS93 GSVPGVLGPTGGVLNPTVTQ
           300       310   




284 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 04:40:54 2016 done: Sun Nov  6 04:40:54 2016
 Total Scan time:  2.550 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]