FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6190, 172 aa 1>>>pF1KE6190 172 - 172 aa - 172 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.6354+/-0.00027; mu= 11.9473+/- 0.017 mean_var=80.4935+/-16.354, 0's: 0 Z-trim(121.5): 9 B-trim: 633 in 1/57 Lambda= 0.142953 statistics sampled from 38155 (38164) to 38155 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.795), E-opt: 0.2 (0.447), width: 16 Scan time: 5.060 The best scores are: opt bits E(85289) NP_005825 (OMIM: 300249) mitochondrial import inne ( 172) 1190 253.8 9.9e-68 NP_006326 (OMIM: 605057) mitochondrial import inne ( 171) 928 199.8 1.8e-51 NP_001161419 (OMIM: 300249) mitochondrial import i ( 222) 889 191.8 5.9e-49 NP_037469 (OMIM: 607251) mitochondrial import inne ( 194) 152 39.8 0.003 >>NP_005825 (OMIM: 300249) mitochondrial import inner me (172 aa) initn: 1190 init1: 1190 opt: 1190 Z-score: 1337.0 bits: 253.8 E(85289): 9.9e-68 Smith-Waterman score: 1190; 100.0% identity (100.0% similar) in 172 aa overlap (1-172:1-172) 10 20 30 40 50 60 pF1KE6 MEEYAREPCPWRIVDDCGGAFTMGVIGGGVFQAIKGFRNAPVGIRHRLRGSANAVRIRAP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 MEEYAREPCPWRIVDDCGGAFTMGVIGGGVFQAIKGFRNAPVGIRHRLRGSANAVRIRAP 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 QIGGSFAVWGGLFSTIDCGLVRLRGKEDPWNSITSGALTGAVLAARSGPLAMVGSAMMGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 QIGGSFAVWGGLFSTIDCGLVRLRGKEDPWNSITSGALTGAVLAARSGPLAMVGSAMMGG 70 80 90 100 110 120 130 140 150 160 170 pF1KE6 ILLALIEGVGILLTRYTAQQFRNAPPFLEDPSQLPPKDGTPAPGYPSYQQYH :::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 ILLALIEGVGILLTRYTAQQFRNAPPFLEDPSQLPPKDGTPAPGYPSYQQYH 130 140 150 160 170 >>NP_006326 (OMIM: 605057) mitochondrial import inner me (171 aa) initn: 908 init1: 908 opt: 928 Z-score: 1045.0 bits: 199.8 E(85289): 1.8e-51 Smith-Waterman score: 928; 75.6% identity (90.7% similar) in 172 aa overlap (1-172:1-171) 10 20 30 40 50 60 pF1KE6 MEEYAREPCPWRIVDDCGGAFTMGVIGGGVFQAIKGFRNAPVGIRHRLRGSANAVRIRAP ::::::::::::::::::::::::.::::.:::::::::.:::. :::::: .:.. ::: NP_006 MEEYAREPCPWRIVDDCGGAFTMGTIGGGIFQAIKGFRNSPVGVNHRLRGSLTAIKTRAP 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 QIGGSFAVWGGLFSTIDCGLVRLRGKEDPWNSITSGALTGAVLAARSGPLAMVGSAMMGG :.:::::::::::: :::..:..::::::::::::::::::.::::.::.:::::: ::: NP_006 QLGGSFAVWGGLFSMIDCSMVQVRGKEDPWNSITSGALTGAILAARNGPVAMVGSAAMGG 70 80 90 100 110 120 130 140 150 160 170 pF1KE6 ILLALIEGVGILLTRYTAQQFRNAPPFLEDPSQLPPKDGTPAPGYPSYQQYH ::::::::.::::::... :: :.: : ::::::: . :. . .:.::. NP_006 ILLALIEGAGILLTRFASAQFPNGPQFAEDPSQLPSTQ-LPSSPFGDYRQYQ 130 140 150 160 170 >>NP_001161419 (OMIM: 300249) mitochondrial import inner (222 aa) initn: 889 init1: 889 opt: 889 Z-score: 999.9 bits: 191.8 E(85289): 5.9e-49 Smith-Waterman score: 933; 75.5% identity (75.5% similar) in 204 aa overlap (19-172:19-222) 10 20 30 40 pF1KE6 MEEYAREPCPWRIVDDCGGAFTMGVIGGGVFQAIKGFRNAPV------------------ :::::::::::::::::::::::: NP_001 MEEYAREPCPWRIVDDCGGAFTMGVIGGGVFQAIKGFRNAPVCRLLSEAPLFIYSCSRSV 10 20 30 40 50 60 50 60 70 pF1KE6 --------------------------------GIRHRLRGSANAVRIRAPQIGGSFAVWG :::::::::::::::::::::::::::: NP_001 SPTVNVSSERAESRPTLFMAVSLHMAWCLAHIGIRHRLRGSANAVRIRAPQIGGSFAVWG 70 80 90 100 110 120 80 90 100 110 120 130 pF1KE6 GLFSTIDCGLVRLRGKEDPWNSITSGALTGAVLAARSGPLAMVGSAMMGGILLALIEGVG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 GLFSTIDCGLVRLRGKEDPWNSITSGALTGAVLAARSGPLAMVGSAMMGGILLALIEGVG 130 140 150 160 170 180 140 150 160 170 pF1KE6 ILLTRYTAQQFRNAPPFLEDPSQLPPKDGTPAPGYPSYQQYH :::::::::::::::::::::::::::::::::::::::::: NP_001 ILLTRYTAQQFRNAPPFLEDPSQLPPKDGTPAPGYPSYQQYH 190 200 210 220 >>NP_037469 (OMIM: 607251) mitochondrial import inner me (194 aa) initn: 138 init1: 117 opt: 152 Z-score: 179.3 bits: 39.8 E(85289): 0.003 Smith-Waterman score: 152; 34.4% identity (55.5% similar) in 128 aa overlap (1-120:61-181) 10 20 pF1KE6 MEEYAREPCPWRIVDDCGGAFTMGVIGG-G : : : : : .. . : :.:..: :. : NP_037 YLVGDKRQPRLLEPGSLGGIPSPAKSEEQKMIEKAMESCAFKAALACVGGFVLG--GAFG 40 50 60 70 80 30 40 50 60 70 80 pF1KE6 VFQAIKGFRNAPVGIRHR--LRG-SANAVRIRAPQIGGS----FAVWGGLFSTIDCGLVR :: : :. .. ::. . : .:. : : : : ::. :..:: .: . NP_037 VFTA--GI-DTNVGFDPKDPYRTPTAKEVLKDMGQRGMSYAKNFAIVGAMFSCTECLIES 90 100 110 120 130 140 90 100 110 120 130 140 pF1KE6 LRGKEDPWNSITSGALTGAVLAARSGPLAMVGSAMMGGILLALIEGVGILLTRYTAQQFR :: : ::. :: .::.... :.: : :. :: NP_037 YRGTSDWKNSVISGCITGGAIGFRAGLKA--GAIGCGGFAAFSAAIDYYLR 150 160 170 180 190 150 160 170 pF1KE6 NAPPFLEDPSQLPPKDGTPAPGYPSYQQYH 172 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 10:12:32 2016 done: Tue Nov 8 10:12:32 2016 Total Scan time: 5.060 Total Display time: -0.040 Function used was FASTA [36.3.4 Apr, 2011]