FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6190, 172 aa 1>>>pF1KE6190 172 - 172 aa - 172 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.4284+/-0.000596; mu= 13.0867+/- 0.036 mean_var=79.2882+/-16.107, 0's: 0 Z-trim(114.4): 7 B-trim: 116 in 1/51 Lambda= 0.144036 statistics sampled from 14928 (14934) to 14928 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.807), E-opt: 0.2 (0.459), width: 16 Scan time: 1.830 The best scores are: opt bits E(32554) CCDS14308.1 TIMM17B gene_id:10245|Hs108|chrX ( 172) 1190 255.6 1.1e-68 CCDS1417.1 TIMM17A gene_id:10440|Hs108|chr1 ( 171) 928 201.1 2.7e-52 CCDS55411.1 TIMM17B gene_id:10245|Hs108|chrX ( 222) 889 193.1 9.3e-50 >>CCDS14308.1 TIMM17B gene_id:10245|Hs108|chrX (172 aa) initn: 1190 init1: 1190 opt: 1190 Z-score: 1346.4 bits: 255.6 E(32554): 1.1e-68 Smith-Waterman score: 1190; 100.0% identity (100.0% similar) in 172 aa overlap (1-172:1-172) 10 20 30 40 50 60 pF1KE6 MEEYAREPCPWRIVDDCGGAFTMGVIGGGVFQAIKGFRNAPVGIRHRLRGSANAVRIRAP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS14 MEEYAREPCPWRIVDDCGGAFTMGVIGGGVFQAIKGFRNAPVGIRHRLRGSANAVRIRAP 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 QIGGSFAVWGGLFSTIDCGLVRLRGKEDPWNSITSGALTGAVLAARSGPLAMVGSAMMGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS14 QIGGSFAVWGGLFSTIDCGLVRLRGKEDPWNSITSGALTGAVLAARSGPLAMVGSAMMGG 70 80 90 100 110 120 130 140 150 160 170 pF1KE6 ILLALIEGVGILLTRYTAQQFRNAPPFLEDPSQLPPKDGTPAPGYPSYQQYH :::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS14 ILLALIEGVGILLTRYTAQQFRNAPPFLEDPSQLPPKDGTPAPGYPSYQQYH 130 140 150 160 170 >>CCDS1417.1 TIMM17A gene_id:10440|Hs108|chr1 (171 aa) initn: 908 init1: 908 opt: 928 Z-score: 1052.2 bits: 201.1 E(32554): 2.7e-52 Smith-Waterman score: 928; 75.6% identity (90.7% similar) in 172 aa overlap (1-172:1-171) 10 20 30 40 50 60 pF1KE6 MEEYAREPCPWRIVDDCGGAFTMGVIGGGVFQAIKGFRNAPVGIRHRLRGSANAVRIRAP ::::::::::::::::::::::::.::::.:::::::::.:::. :::::: .:.. ::: CCDS14 MEEYAREPCPWRIVDDCGGAFTMGTIGGGIFQAIKGFRNSPVGVNHRLRGSLTAIKTRAP 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 QIGGSFAVWGGLFSTIDCGLVRLRGKEDPWNSITSGALTGAVLAARSGPLAMVGSAMMGG :.:::::::::::: :::..:..::::::::::::::::::.::::.::.:::::: ::: CCDS14 QLGGSFAVWGGLFSMIDCSMVQVRGKEDPWNSITSGALTGAILAARNGPVAMVGSAAMGG 70 80 90 100 110 120 130 140 150 160 170 pF1KE6 ILLALIEGVGILLTRYTAQQFRNAPPFLEDPSQLPPKDGTPAPGYPSYQQYH ::::::::.::::::... :: :.: : ::::::: . :. . .:.::. CCDS14 ILLALIEGAGILLTRFASAQFPNGPQFAEDPSQLPSTQ-LPSSPFGDYRQYQ 130 140 150 160 170 >>CCDS55411.1 TIMM17B gene_id:10245|Hs108|chrX (222 aa) initn: 889 init1: 889 opt: 889 Z-score: 1006.8 bits: 193.1 E(32554): 9.3e-50 Smith-Waterman score: 933; 75.5% identity (75.5% similar) in 204 aa overlap (19-172:19-222) 10 20 30 40 pF1KE6 MEEYAREPCPWRIVDDCGGAFTMGVIGGGVFQAIKGFRNAPV------------------ :::::::::::::::::::::::: CCDS55 MEEYAREPCPWRIVDDCGGAFTMGVIGGGVFQAIKGFRNAPVCRLLSEAPLFIYSCSRSV 10 20 30 40 50 60 50 60 70 pF1KE6 --------------------------------GIRHRLRGSANAVRIRAPQIGGSFAVWG :::::::::::::::::::::::::::: CCDS55 SPTVNVSSERAESRPTLFMAVSLHMAWCLAHIGIRHRLRGSANAVRIRAPQIGGSFAVWG 70 80 90 100 110 120 80 90 100 110 120 130 pF1KE6 GLFSTIDCGLVRLRGKEDPWNSITSGALTGAVLAARSGPLAMVGSAMMGGILLALIEGVG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS55 GLFSTIDCGLVRLRGKEDPWNSITSGALTGAVLAARSGPLAMVGSAMMGGILLALIEGVG 130 140 150 160 170 180 140 150 160 170 pF1KE6 ILLTRYTAQQFRNAPPFLEDPSQLPPKDGTPAPGYPSYQQYH :::::::::::::::::::::::::::::::::::::::::: CCDS55 ILLTRYTAQQFRNAPPFLEDPSQLPPKDGTPAPGYPSYQQYH 190 200 210 220 172 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 10:12:31 2016 done: Tue Nov 8 10:12:32 2016 Total Scan time: 1.830 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]