FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB9455, 1454 aa 1>>>pF1KB9455 1454 - 1454 aa - 1454 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 11.9991+/-0.000446; mu= -6.9643+/- 0.028 mean_var=427.6614+/-90.684, 0's: 0 Z-trim(121.2): 20 B-trim: 42 in 1/56 Lambda= 0.062019 statistics sampled from 37560 (37580) to 37560 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.722), E-opt: 0.2 (0.441), width: 16 Scan time: 17.400 The best scores are: opt bits E(85289) NP_004220 (OMIM: 300182) mediator of RNA polymeras (1454) 9762 889.3 0 XP_016885451 (OMIM: 300182) PREDICTED: mediator of (1338) 8997 820.8 0 XP_011542302 (OMIM: 300182) PREDICTED: mediator of (1338) 8997 820.8 0 XP_005272758 (OMIM: 300182) PREDICTED: mediator of (1338) 8997 820.8 0 >>NP_004220 (OMIM: 300182) mediator of RNA polymerase II (1454 aa) initn: 9762 init1: 9762 opt: 9762 Z-score: 4738.0 bits: 889.3 E(85289): 0 Smith-Waterman score: 9762; 99.9% identity (100.0% similar) in 1454 aa overlap (1-1454:1-1454) 10 20 30 40 50 60 pF1KB9 MAPVQLENHQLVPPGGGGGGSGGPPSAPAPPPPGAAVAAAAAAAASPGYRLSTLIEFLLH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 MAPVQLENHQLVPPGGGGGGSGGPPSAPAPPPPGAAVAAAAAAAASPGYRLSTLIEFLLH 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB9 RAYSELMVLTDLLPRKSDVERKIEIVQFASRTRQLFVRLLALVKWANNAGKVEKCAMISS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 RAYSELMVLTDLLPRKSDVERKIEIVQFASRTRQLFVRLLALVKWANNAGKVEKCAMISS 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB9 FLDQQAILFVDTADRLASLARDALVHARLPSFAIPYAIDVLTTGSYPRLPTCIRDKIIPP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 FLDQQAILFVDTADRLASLARDALVHARLPSFAIPYAIDVLTTGSYPRLPTCIRDKIIPP 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB9 DPITKIEKQATLHQLNQILRHRLVTTDLPPQLANLTVANGRVKFRVEGEFEATLTVMGDD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 DPITKIEKQATLHQLNQILRHRLVTTDLPPQLANLTVANGRVKFRVEGEFEATLTVMGDD 190 200 210 220 230 240 250 260 270 280 290 300 pF1KB9 PDVPWRLLKLEILVEDKETGDGRALVHSMQISFIHQLVQSRLFADEKPLQDMYNCLHSFC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 PDVPWRLLKLEILVEDKETGDGRALVHSMQISFIHQLVQSRLFADEKPLQDMYNCLHSFC 250 260 270 280 290 300 310 320 330 340 350 360 pF1KB9 LSLQLEVLHSQTLMLIRERWGDLVQVERYHAGKCLSLSVWNQQVLGRKTGTASVHKVTIK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 LSLQLEVLHSQTLMLIRERWGDLVQVERYHAGKCLSLSVWNQQVLGRKTGTASVHKVTIK 310 320 330 340 350 360 370 380 390 400 410 420 pF1KB9 IDENDVSKPLQIFHDPPLPASDSKLVERAMKIDHLSIEKLLIDSVHARAHQKLQELKAIL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 IDENDVSKPLQIFHDPPLPASDSKLVERAMKIDHLSIEKLLIDSVHARAHQKLQELKAIL 370 380 390 400 410 420 430 440 450 460 470 480 pF1KB9 RGFNANENSSIETALPALVVPILEPCGNSECLHIFVDLHSGMFQLMLYGLDQATLDDMEK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 RGFNANENSSIETALPALVVPILEPCGNSECLHIFVDLHSGMFQLMLYGLDQATLDDMEK 430 440 450 460 470 480 490 500 510 520 530 540 pF1KB9 SVNDDMKRIIPWIQQLKFWLGQQRCKQSIKHLPTISSETLQLSNYSTHPIGNLSKNKLFI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 SVNDDMKRIIPWIQQLKFWLGQQRCKQSIKHLPTISSETLQLSNYSTHPIGNLSKNKLFI 490 500 510 520 530 540 550 560 570 580 590 600 pF1KB9 KLTRLPQYYIVVEMLEVPNKPTQLSYKYYFMSVNAADREDSPAMALLLQQFKENIQDLVF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 KLTRLPQYYIVVEMLEVPNKPTQLSYKYYFMSVNAADREDSPAMALLLQQFKENIQDLVF 550 560 570 580 590 600 610 620 630 640 650 660 pF1KB9 RTKTGKQTRTNAKRKLSDDPCPVESKKTKRAGEMCAFNKVLAHFVAMCDTNMPFVGLRLE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 RTKTGKQTRTNAKRKLSDDPCPVESKKTKRAGEMCAFNKVLAHFVAMCDTNMPFVGLRLE 610 620 630 640 650 660 670 680 690 700 710 720 pF1KB9 LSNLEIPHQGVQVEGDGFSHAIRLLKIPPCKGITEETQKALDRSLLDCTFRLQGRNNRTW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 LSNLEIPHQGVQVEGDGFSHAIRLLKIPPCKGITEETQKALDRSLLDCTFRLQGRNNRTW 670 680 690 700 710 720 730 740 750 760 770 780 pF1KB9 VAELVFANCPLNGTSTREQGPSRHVYLTYENLLSEPVGGRKVVEMFLNDWNSIARLYECV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 VAELVFANCPLNGTSTREQGPSRHVYLTYENLLSEPVGGRKVVEMFLNDWNSIARLYECV 730 740 750 760 770 780 790 800 810 820 830 840 pF1KB9 LEFARSLPDIPAHLNIFSEVRVYNYRKLILCYGTTKGSSISIQWNSIHQKFHISLGTVGP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 LEFARSLPDIPAHLNIFSEVRVYNYRKLILCYGTTKGSSISIQWNSIHQKFHISLGTVGP 790 800 810 820 830 840 850 860 870 880 890 900 pF1KB9 NSGCSNCHNTILHQLQEMFNKTPNVVQLLQVLFDTQAPLNAINKLPTVPMLGLTQRTNTA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 NSGCSNCHNTILHQLQEMFNKTPNVVQLLQVLFDTQAPLNAINKLPTVPMLGLTQRTNTA 850 860 870 880 890 900 910 920 930 940 950 960 pF1KB9 YQCFSILPQSSTHIRLAFRNMYCIDIYCRSRGVVAIRDGAYSLFDNSKLVEGFYPAPGLK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 YQCFSILPQSSTHIRLAFRNMYCIDIYCRSRGVVAIRDGAYSLFDNSKLVEGFYPAPGLK 910 920 930 940 950 960 970 980 990 1000 1010 1020 pF1KB9 TFLNMFVDSNQDARRRSVNEDDNPPSPIGGDMMDSLISQLHPPPQQQPFPKQPGTSGAYP ::::::::::::::::::::::::::::::::::::::::.::::::::::::::::::: NP_004 TFLNMFVDSNQDARRRSVNEDDNPPSPIGGDMMDSLISQLQPPPQQQPFPKQPGTSGAYP 970 980 990 1000 1010 1020 1030 1040 1050 1060 1070 1080 pF1KB9 LTSPPTSYHSTVNQSPSMMHTQSPGNLHAASSPSGALRAPSPASFVPTPPPSSHGISIGP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 LTSPPTSYHSTVNQSPSMMHTQSPGNLHAASSPSGALRAPSPASFVPTPPPSSHGISIGP 1030 1040 1050 1060 1070 1080 1090 1100 1110 1120 1130 1140 pF1KB9 GASFASPHGTLDPSSPYTMVSPSGRAGNWPGSPQVSGPSPAARMPGMSPANPSLHSPVPD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 GASFASPHGTLDPSSPYTMVSPSGRAGNWPGSPQVSGPSPAARMPGMSPANPSLHSPVPD 1090 1100 1110 1120 1130 1140 1150 1160 1170 1180 1190 1200 pF1KB9 ASHSPRAGTSSQTMPTNMPPPRKLPQRSWAASIPTILTHSALNILLLPSPTPGLVPGLAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 ASHSPRAGTSSQTMPTNMPPPRKLPQRSWAASIPTILTHSALNILLLPSPTPGLVPGLAG 1150 1160 1170 1180 1190 1200 1210 1220 1230 1240 1250 1260 pF1KB9 SYLCSPLERFLGSVIMRRHLQRIIQQETLQLINSNEPGVIMFKTDALKCRVALSPKTNQT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 SYLCSPLERFLGSVIMRRHLQRIIQQETLQLINSNEPGVIMFKTDALKCRVALSPKTNQT 1210 1220 1230 1240 1250 1260 1270 1280 1290 1300 1310 1320 pF1KB9 LQLKVTPENAGQWKPDELQVLEKFFETRVAGPPFKANTLIAFTKLLGAPTHILRDCVHIM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 LQLKVTPENAGQWKPDELQVLEKFFETRVAGPPFKANTLIAFTKLLGAPTHILRDCVHIM 1270 1280 1290 1300 1310 1320 1330 1340 1350 1360 1370 1380 pF1KB9 KLELFPDQATQLKWNVQFCLTIPPSAPPIAPPGTPAVVLKSKMLFFLQLTQKTSVPPQEP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 KLELFPDQATQLKWNVQFCLTIPPSAPPIAPPGTPAVVLKSKMLFFLQLTQKTSVPPQEP 1330 1340 1350 1360 1370 1380 1390 1400 1410 1420 1430 1440 pF1KB9 VSIIVPIIYDMASGTTQQADIPRQQNSSVAAPMMVSNILKRFAEMNPPRQGECTIFAAVR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 VSIIVPIIYDMASGTTQQADIPRQQNSSVAAPMMVSNILKRFAEMNPPRQGECTIFAAVR 1390 1400 1410 1420 1430 1440 1450 pF1KB9 DLMANLTLPPGGRP :::::::::::::: NP_004 DLMANLTLPPGGRP 1450 >>XP_016885451 (OMIM: 300182) PREDICTED: mediator of RNA (1338 aa) initn: 8997 init1: 8997 opt: 8997 Z-score: 4368.6 bits: 820.8 E(85289): 0 Smith-Waterman score: 8997; 99.9% identity (100.0% similar) in 1338 aa overlap (117-1454:1-1338) 90 100 110 120 130 140 pF1KB9 QFASRTRQLFVRLLALVKWANNAGKVEKCAMISSFLDQQAILFVDTADRLASLARDALVH :::::::::::::::::::::::::::::: XP_016 MISSFLDQQAILFVDTADRLASLARDALVH 10 20 30 150 160 170 180 190 200 pF1KB9 ARLPSFAIPYAIDVLTTGSYPRLPTCIRDKIIPPDPITKIEKQATLHQLNQILRHRLVTT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 ARLPSFAIPYAIDVLTTGSYPRLPTCIRDKIIPPDPITKIEKQATLHQLNQILRHRLVTT 40 50 60 70 80 90 210 220 230 240 250 260 pF1KB9 DLPPQLANLTVANGRVKFRVEGEFEATLTVMGDDPDVPWRLLKLEILVEDKETGDGRALV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 DLPPQLANLTVANGRVKFRVEGEFEATLTVMGDDPDVPWRLLKLEILVEDKETGDGRALV 100 110 120 130 140 150 270 280 290 300 310 320 pF1KB9 HSMQISFIHQLVQSRLFADEKPLQDMYNCLHSFCLSLQLEVLHSQTLMLIRERWGDLVQV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 HSMQISFIHQLVQSRLFADEKPLQDMYNCLHSFCLSLQLEVLHSQTLMLIRERWGDLVQV 160 170 180 190 200 210 330 340 350 360 370 380 pF1KB9 ERYHAGKCLSLSVWNQQVLGRKTGTASVHKVTIKIDENDVSKPLQIFHDPPLPASDSKLV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 ERYHAGKCLSLSVWNQQVLGRKTGTASVHKVTIKIDENDVSKPLQIFHDPPLPASDSKLV 220 230 240 250 260 270 390 400 410 420 430 440 pF1KB9 ERAMKIDHLSIEKLLIDSVHARAHQKLQELKAILRGFNANENSSIETALPALVVPILEPC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 ERAMKIDHLSIEKLLIDSVHARAHQKLQELKAILRGFNANENSSIETALPALVVPILEPC 280 290 300 310 320 330 450 460 470 480 490 500 pF1KB9 GNSECLHIFVDLHSGMFQLMLYGLDQATLDDMEKSVNDDMKRIIPWIQQLKFWLGQQRCK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 GNSECLHIFVDLHSGMFQLMLYGLDQATLDDMEKSVNDDMKRIIPWIQQLKFWLGQQRCK 340 350 360 370 380 390 510 520 530 540 550 560 pF1KB9 QSIKHLPTISSETLQLSNYSTHPIGNLSKNKLFIKLTRLPQYYIVVEMLEVPNKPTQLSY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 QSIKHLPTISSETLQLSNYSTHPIGNLSKNKLFIKLTRLPQYYIVVEMLEVPNKPTQLSY 400 410 420 430 440 450 570 580 590 600 610 620 pF1KB9 KYYFMSVNAADREDSPAMALLLQQFKENIQDLVFRTKTGKQTRTNAKRKLSDDPCPVESK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 KYYFMSVNAADREDSPAMALLLQQFKENIQDLVFRTKTGKQTRTNAKRKLSDDPCPVESK 460 470 480 490 500 510 630 640 650 660 670 680 pF1KB9 KTKRAGEMCAFNKVLAHFVAMCDTNMPFVGLRLELSNLEIPHQGVQVEGDGFSHAIRLLK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 KTKRAGEMCAFNKVLAHFVAMCDTNMPFVGLRLELSNLEIPHQGVQVEGDGFSHAIRLLK 520 530 540 550 560 570 690 700 710 720 730 740 pF1KB9 IPPCKGITEETQKALDRSLLDCTFRLQGRNNRTWVAELVFANCPLNGTSTREQGPSRHVY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 IPPCKGITEETQKALDRSLLDCTFRLQGRNNRTWVAELVFANCPLNGTSTREQGPSRHVY 580 590 600 610 620 630 750 760 770 780 790 800 pF1KB9 LTYENLLSEPVGGRKVVEMFLNDWNSIARLYECVLEFARSLPDIPAHLNIFSEVRVYNYR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 LTYENLLSEPVGGRKVVEMFLNDWNSIARLYECVLEFARSLPDIPAHLNIFSEVRVYNYR 640 650 660 670 680 690 810 820 830 840 850 860 pF1KB9 KLILCYGTTKGSSISIQWNSIHQKFHISLGTVGPNSGCSNCHNTILHQLQEMFNKTPNVV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 KLILCYGTTKGSSISIQWNSIHQKFHISLGTVGPNSGCSNCHNTILHQLQEMFNKTPNVV 700 710 720 730 740 750 870 880 890 900 910 920 pF1KB9 QLLQVLFDTQAPLNAINKLPTVPMLGLTQRTNTAYQCFSILPQSSTHIRLAFRNMYCIDI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 QLLQVLFDTQAPLNAINKLPTVPMLGLTQRTNTAYQCFSILPQSSTHIRLAFRNMYCIDI 760 770 780 790 800 810 930 940 950 960 970 980 pF1KB9 YCRSRGVVAIRDGAYSLFDNSKLVEGFYPAPGLKTFLNMFVDSNQDARRRSVNEDDNPPS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 YCRSRGVVAIRDGAYSLFDNSKLVEGFYPAPGLKTFLNMFVDSNQDARRRSVNEDDNPPS 820 830 840 850 860 870 990 1000 1010 1020 1030 1040 pF1KB9 PIGGDMMDSLISQLHPPPQQQPFPKQPGTSGAYPLTSPPTSYHSTVNQSPSMMHTQSPGN ::::::::::::::.::::::::::::::::::::::::::::::::::::::::::::: XP_016 PIGGDMMDSLISQLQPPPQQQPFPKQPGTSGAYPLTSPPTSYHSTVNQSPSMMHTQSPGN 880 890 900 910 920 930 1050 1060 1070 1080 1090 1100 pF1KB9 LHAASSPSGALRAPSPASFVPTPPPSSHGISIGPGASFASPHGTLDPSSPYTMVSPSGRA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 LHAASSPSGALRAPSPASFVPTPPPSSHGISIGPGASFASPHGTLDPSSPYTMVSPSGRA 940 950 960 970 980 990 1110 1120 1130 1140 1150 1160 pF1KB9 GNWPGSPQVSGPSPAARMPGMSPANPSLHSPVPDASHSPRAGTSSQTMPTNMPPPRKLPQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 GNWPGSPQVSGPSPAARMPGMSPANPSLHSPVPDASHSPRAGTSSQTMPTNMPPPRKLPQ 1000 1010 1020 1030 1040 1050 1170 1180 1190 1200 1210 1220 pF1KB9 RSWAASIPTILTHSALNILLLPSPTPGLVPGLAGSYLCSPLERFLGSVIMRRHLQRIIQQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 RSWAASIPTILTHSALNILLLPSPTPGLVPGLAGSYLCSPLERFLGSVIMRRHLQRIIQQ 1060 1070 1080 1090 1100 1110 1230 1240 1250 1260 1270 1280 pF1KB9 ETLQLINSNEPGVIMFKTDALKCRVALSPKTNQTLQLKVTPENAGQWKPDELQVLEKFFE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 ETLQLINSNEPGVIMFKTDALKCRVALSPKTNQTLQLKVTPENAGQWKPDELQVLEKFFE 1120 1130 1140 1150 1160 1170 1290 1300 1310 1320 1330 1340 pF1KB9 TRVAGPPFKANTLIAFTKLLGAPTHILRDCVHIMKLELFPDQATQLKWNVQFCLTIPPSA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 TRVAGPPFKANTLIAFTKLLGAPTHILRDCVHIMKLELFPDQATQLKWNVQFCLTIPPSA 1180 1190 1200 1210 1220 1230 1350 1360 1370 1380 1390 1400 pF1KB9 PPIAPPGTPAVVLKSKMLFFLQLTQKTSVPPQEPVSIIVPIIYDMASGTTQQADIPRQQN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 PPIAPPGTPAVVLKSKMLFFLQLTQKTSVPPQEPVSIIVPIIYDMASGTTQQADIPRQQN 1240 1250 1260 1270 1280 1290 1410 1420 1430 1440 1450 pF1KB9 SSVAAPMMVSNILKRFAEMNPPRQGECTIFAAVRDLMANLTLPPGGRP :::::::::::::::::::::::::::::::::::::::::::::::: XP_016 SSVAAPMMVSNILKRFAEMNPPRQGECTIFAAVRDLMANLTLPPGGRP 1300 1310 1320 1330 >>XP_011542302 (OMIM: 300182) PREDICTED: mediator of RNA (1338 aa) initn: 8997 init1: 8997 opt: 8997 Z-score: 4368.6 bits: 820.8 E(85289): 0 Smith-Waterman score: 8997; 99.9% identity (100.0% similar) in 1338 aa overlap (117-1454:1-1338) 90 100 110 120 130 140 pF1KB9 QFASRTRQLFVRLLALVKWANNAGKVEKCAMISSFLDQQAILFVDTADRLASLARDALVH :::::::::::::::::::::::::::::: XP_011 MISSFLDQQAILFVDTADRLASLARDALVH 10 20 30 150 160 170 180 190 200 pF1KB9 ARLPSFAIPYAIDVLTTGSYPRLPTCIRDKIIPPDPITKIEKQATLHQLNQILRHRLVTT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 ARLPSFAIPYAIDVLTTGSYPRLPTCIRDKIIPPDPITKIEKQATLHQLNQILRHRLVTT 40 50 60 70 80 90 210 220 230 240 250 260 pF1KB9 DLPPQLANLTVANGRVKFRVEGEFEATLTVMGDDPDVPWRLLKLEILVEDKETGDGRALV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 DLPPQLANLTVANGRVKFRVEGEFEATLTVMGDDPDVPWRLLKLEILVEDKETGDGRALV 100 110 120 130 140 150 270 280 290 300 310 320 pF1KB9 HSMQISFIHQLVQSRLFADEKPLQDMYNCLHSFCLSLQLEVLHSQTLMLIRERWGDLVQV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 HSMQISFIHQLVQSRLFADEKPLQDMYNCLHSFCLSLQLEVLHSQTLMLIRERWGDLVQV 160 170 180 190 200 210 330 340 350 360 370 380 pF1KB9 ERYHAGKCLSLSVWNQQVLGRKTGTASVHKVTIKIDENDVSKPLQIFHDPPLPASDSKLV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 ERYHAGKCLSLSVWNQQVLGRKTGTASVHKVTIKIDENDVSKPLQIFHDPPLPASDSKLV 220 230 240 250 260 270 390 400 410 420 430 440 pF1KB9 ERAMKIDHLSIEKLLIDSVHARAHQKLQELKAILRGFNANENSSIETALPALVVPILEPC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 ERAMKIDHLSIEKLLIDSVHARAHQKLQELKAILRGFNANENSSIETALPALVVPILEPC 280 290 300 310 320 330 450 460 470 480 490 500 pF1KB9 GNSECLHIFVDLHSGMFQLMLYGLDQATLDDMEKSVNDDMKRIIPWIQQLKFWLGQQRCK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 GNSECLHIFVDLHSGMFQLMLYGLDQATLDDMEKSVNDDMKRIIPWIQQLKFWLGQQRCK 340 350 360 370 380 390 510 520 530 540 550 560 pF1KB9 QSIKHLPTISSETLQLSNYSTHPIGNLSKNKLFIKLTRLPQYYIVVEMLEVPNKPTQLSY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 QSIKHLPTISSETLQLSNYSTHPIGNLSKNKLFIKLTRLPQYYIVVEMLEVPNKPTQLSY 400 410 420 430 440 450 570 580 590 600 610 620 pF1KB9 KYYFMSVNAADREDSPAMALLLQQFKENIQDLVFRTKTGKQTRTNAKRKLSDDPCPVESK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 KYYFMSVNAADREDSPAMALLLQQFKENIQDLVFRTKTGKQTRTNAKRKLSDDPCPVESK 460 470 480 490 500 510 630 640 650 660 670 680 pF1KB9 KTKRAGEMCAFNKVLAHFVAMCDTNMPFVGLRLELSNLEIPHQGVQVEGDGFSHAIRLLK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 KTKRAGEMCAFNKVLAHFVAMCDTNMPFVGLRLELSNLEIPHQGVQVEGDGFSHAIRLLK 520 530 540 550 560 570 690 700 710 720 730 740 pF1KB9 IPPCKGITEETQKALDRSLLDCTFRLQGRNNRTWVAELVFANCPLNGTSTREQGPSRHVY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 IPPCKGITEETQKALDRSLLDCTFRLQGRNNRTWVAELVFANCPLNGTSTREQGPSRHVY 580 590 600 610 620 630 750 760 770 780 790 800 pF1KB9 LTYENLLSEPVGGRKVVEMFLNDWNSIARLYECVLEFARSLPDIPAHLNIFSEVRVYNYR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 LTYENLLSEPVGGRKVVEMFLNDWNSIARLYECVLEFARSLPDIPAHLNIFSEVRVYNYR 640 650 660 670 680 690 810 820 830 840 850 860 pF1KB9 KLILCYGTTKGSSISIQWNSIHQKFHISLGTVGPNSGCSNCHNTILHQLQEMFNKTPNVV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 KLILCYGTTKGSSISIQWNSIHQKFHISLGTVGPNSGCSNCHNTILHQLQEMFNKTPNVV 700 710 720 730 740 750 870 880 890 900 910 920 pF1KB9 QLLQVLFDTQAPLNAINKLPTVPMLGLTQRTNTAYQCFSILPQSSTHIRLAFRNMYCIDI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 QLLQVLFDTQAPLNAINKLPTVPMLGLTQRTNTAYQCFSILPQSSTHIRLAFRNMYCIDI 760 770 780 790 800 810 930 940 950 960 970 980 pF1KB9 YCRSRGVVAIRDGAYSLFDNSKLVEGFYPAPGLKTFLNMFVDSNQDARRRSVNEDDNPPS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 YCRSRGVVAIRDGAYSLFDNSKLVEGFYPAPGLKTFLNMFVDSNQDARRRSVNEDDNPPS 820 830 840 850 860 870 990 1000 1010 1020 1030 1040 pF1KB9 PIGGDMMDSLISQLHPPPQQQPFPKQPGTSGAYPLTSPPTSYHSTVNQSPSMMHTQSPGN ::::::::::::::.::::::::::::::::::::::::::::::::::::::::::::: XP_011 PIGGDMMDSLISQLQPPPQQQPFPKQPGTSGAYPLTSPPTSYHSTVNQSPSMMHTQSPGN 880 890 900 910 920 930 1050 1060 1070 1080 1090 1100 pF1KB9 LHAASSPSGALRAPSPASFVPTPPPSSHGISIGPGASFASPHGTLDPSSPYTMVSPSGRA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 LHAASSPSGALRAPSPASFVPTPPPSSHGISIGPGASFASPHGTLDPSSPYTMVSPSGRA 940 950 960 970 980 990 1110 1120 1130 1140 1150 1160 pF1KB9 GNWPGSPQVSGPSPAARMPGMSPANPSLHSPVPDASHSPRAGTSSQTMPTNMPPPRKLPQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 GNWPGSPQVSGPSPAARMPGMSPANPSLHSPVPDASHSPRAGTSSQTMPTNMPPPRKLPQ 1000 1010 1020 1030 1040 1050 1170 1180 1190 1200 1210 1220 pF1KB9 RSWAASIPTILTHSALNILLLPSPTPGLVPGLAGSYLCSPLERFLGSVIMRRHLQRIIQQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 RSWAASIPTILTHSALNILLLPSPTPGLVPGLAGSYLCSPLERFLGSVIMRRHLQRIIQQ 1060 1070 1080 1090 1100 1110 1230 1240 1250 1260 1270 1280 pF1KB9 ETLQLINSNEPGVIMFKTDALKCRVALSPKTNQTLQLKVTPENAGQWKPDELQVLEKFFE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 ETLQLINSNEPGVIMFKTDALKCRVALSPKTNQTLQLKVTPENAGQWKPDELQVLEKFFE 1120 1130 1140 1150 1160 1170 1290 1300 1310 1320 1330 1340 pF1KB9 TRVAGPPFKANTLIAFTKLLGAPTHILRDCVHIMKLELFPDQATQLKWNVQFCLTIPPSA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 TRVAGPPFKANTLIAFTKLLGAPTHILRDCVHIMKLELFPDQATQLKWNVQFCLTIPPSA 1180 1190 1200 1210 1220 1230 1350 1360 1370 1380 1390 1400 pF1KB9 PPIAPPGTPAVVLKSKMLFFLQLTQKTSVPPQEPVSIIVPIIYDMASGTTQQADIPRQQN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 PPIAPPGTPAVVLKSKMLFFLQLTQKTSVPPQEPVSIIVPIIYDMASGTTQQADIPRQQN 1240 1250 1260 1270 1280 1290 1410 1420 1430 1440 1450 pF1KB9 SSVAAPMMVSNILKRFAEMNPPRQGECTIFAAVRDLMANLTLPPGGRP :::::::::::::::::::::::::::::::::::::::::::::::: XP_011 SSVAAPMMVSNILKRFAEMNPPRQGECTIFAAVRDLMANLTLPPGGRP 1300 1310 1320 1330 >>XP_005272758 (OMIM: 300182) PREDICTED: mediator of RNA (1338 aa) initn: 8997 init1: 8997 opt: 8997 Z-score: 4368.6 bits: 820.8 E(85289): 0 Smith-Waterman score: 8997; 99.9% identity (100.0% similar) in 1338 aa overlap (117-1454:1-1338) 90 100 110 120 130 140 pF1KB9 QFASRTRQLFVRLLALVKWANNAGKVEKCAMISSFLDQQAILFVDTADRLASLARDALVH :::::::::::::::::::::::::::::: XP_005 MISSFLDQQAILFVDTADRLASLARDALVH 10 20 30 150 160 170 180 190 200 pF1KB9 ARLPSFAIPYAIDVLTTGSYPRLPTCIRDKIIPPDPITKIEKQATLHQLNQILRHRLVTT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 ARLPSFAIPYAIDVLTTGSYPRLPTCIRDKIIPPDPITKIEKQATLHQLNQILRHRLVTT 40 50 60 70 80 90 210 220 230 240 250 260 pF1KB9 DLPPQLANLTVANGRVKFRVEGEFEATLTVMGDDPDVPWRLLKLEILVEDKETGDGRALV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 DLPPQLANLTVANGRVKFRVEGEFEATLTVMGDDPDVPWRLLKLEILVEDKETGDGRALV 100 110 120 130 140 150 270 280 290 300 310 320 pF1KB9 HSMQISFIHQLVQSRLFADEKPLQDMYNCLHSFCLSLQLEVLHSQTLMLIRERWGDLVQV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 HSMQISFIHQLVQSRLFADEKPLQDMYNCLHSFCLSLQLEVLHSQTLMLIRERWGDLVQV 160 170 180 190 200 210 330 340 350 360 370 380 pF1KB9 ERYHAGKCLSLSVWNQQVLGRKTGTASVHKVTIKIDENDVSKPLQIFHDPPLPASDSKLV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 ERYHAGKCLSLSVWNQQVLGRKTGTASVHKVTIKIDENDVSKPLQIFHDPPLPASDSKLV 220 230 240 250 260 270 390 400 410 420 430 440 pF1KB9 ERAMKIDHLSIEKLLIDSVHARAHQKLQELKAILRGFNANENSSIETALPALVVPILEPC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 ERAMKIDHLSIEKLLIDSVHARAHQKLQELKAILRGFNANENSSIETALPALVVPILEPC 280 290 300 310 320 330 450 460 470 480 490 500 pF1KB9 GNSECLHIFVDLHSGMFQLMLYGLDQATLDDMEKSVNDDMKRIIPWIQQLKFWLGQQRCK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 GNSECLHIFVDLHSGMFQLMLYGLDQATLDDMEKSVNDDMKRIIPWIQQLKFWLGQQRCK 340 350 360 370 380 390 510 520 530 540 550 560 pF1KB9 QSIKHLPTISSETLQLSNYSTHPIGNLSKNKLFIKLTRLPQYYIVVEMLEVPNKPTQLSY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 QSIKHLPTISSETLQLSNYSTHPIGNLSKNKLFIKLTRLPQYYIVVEMLEVPNKPTQLSY 400 410 420 430 440 450 570 580 590 600 610 620 pF1KB9 KYYFMSVNAADREDSPAMALLLQQFKENIQDLVFRTKTGKQTRTNAKRKLSDDPCPVESK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 KYYFMSVNAADREDSPAMALLLQQFKENIQDLVFRTKTGKQTRTNAKRKLSDDPCPVESK 460 470 480 490 500 510 630 640 650 660 670 680 pF1KB9 KTKRAGEMCAFNKVLAHFVAMCDTNMPFVGLRLELSNLEIPHQGVQVEGDGFSHAIRLLK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 KTKRAGEMCAFNKVLAHFVAMCDTNMPFVGLRLELSNLEIPHQGVQVEGDGFSHAIRLLK 520 530 540 550 560 570 690 700 710 720 730 740 pF1KB9 IPPCKGITEETQKALDRSLLDCTFRLQGRNNRTWVAELVFANCPLNGTSTREQGPSRHVY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 IPPCKGITEETQKALDRSLLDCTFRLQGRNNRTWVAELVFANCPLNGTSTREQGPSRHVY 580 590 600 610 620 630 750 760 770 780 790 800 pF1KB9 LTYENLLSEPVGGRKVVEMFLNDWNSIARLYECVLEFARSLPDIPAHLNIFSEVRVYNYR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 LTYENLLSEPVGGRKVVEMFLNDWNSIARLYECVLEFARSLPDIPAHLNIFSEVRVYNYR 640 650 660 670 680 690 810 820 830 840 850 860 pF1KB9 KLILCYGTTKGSSISIQWNSIHQKFHISLGTVGPNSGCSNCHNTILHQLQEMFNKTPNVV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 KLILCYGTTKGSSISIQWNSIHQKFHISLGTVGPNSGCSNCHNTILHQLQEMFNKTPNVV 700 710 720 730 740 750 870 880 890 900 910 920 pF1KB9 QLLQVLFDTQAPLNAINKLPTVPMLGLTQRTNTAYQCFSILPQSSTHIRLAFRNMYCIDI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 QLLQVLFDTQAPLNAINKLPTVPMLGLTQRTNTAYQCFSILPQSSTHIRLAFRNMYCIDI 760 770 780 790 800 810 930 940 950 960 970 980 pF1KB9 YCRSRGVVAIRDGAYSLFDNSKLVEGFYPAPGLKTFLNMFVDSNQDARRRSVNEDDNPPS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 YCRSRGVVAIRDGAYSLFDNSKLVEGFYPAPGLKTFLNMFVDSNQDARRRSVNEDDNPPS 820 830 840 850 860 870 990 1000 1010 1020 1030 1040 pF1KB9 PIGGDMMDSLISQLHPPPQQQPFPKQPGTSGAYPLTSPPTSYHSTVNQSPSMMHTQSPGN ::::::::::::::.::::::::::::::::::::::::::::::::::::::::::::: XP_005 PIGGDMMDSLISQLQPPPQQQPFPKQPGTSGAYPLTSPPTSYHSTVNQSPSMMHTQSPGN 880 890 900 910 920 930 1050 1060 1070 1080 1090 1100 pF1KB9 LHAASSPSGALRAPSPASFVPTPPPSSHGISIGPGASFASPHGTLDPSSPYTMVSPSGRA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 LHAASSPSGALRAPSPASFVPTPPPSSHGISIGPGASFASPHGTLDPSSPYTMVSPSGRA 940 950 960 970 980 990 1110 1120 1130 1140 1150 1160 pF1KB9 GNWPGSPQVSGPSPAARMPGMSPANPSLHSPVPDASHSPRAGTSSQTMPTNMPPPRKLPQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 GNWPGSPQVSGPSPAARMPGMSPANPSLHSPVPDASHSPRAGTSSQTMPTNMPPPRKLPQ 1000 1010 1020 1030 1040 1050 1170 1180 1190 1200 1210 1220 pF1KB9 RSWAASIPTILTHSALNILLLPSPTPGLVPGLAGSYLCSPLERFLGSVIMRRHLQRIIQQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 RSWAASIPTILTHSALNILLLPSPTPGLVPGLAGSYLCSPLERFLGSVIMRRHLQRIIQQ 1060 1070 1080 1090 1100 1110 1230 1240 1250 1260 1270 1280 pF1KB9 ETLQLINSNEPGVIMFKTDALKCRVALSPKTNQTLQLKVTPENAGQWKPDELQVLEKFFE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 ETLQLINSNEPGVIMFKTDALKCRVALSPKTNQTLQLKVTPENAGQWKPDELQVLEKFFE 1120 1130 1140 1150 1160 1170 1290 1300 1310 1320 1330 1340 pF1KB9 TRVAGPPFKANTLIAFTKLLGAPTHILRDCVHIMKLELFPDQATQLKWNVQFCLTIPPSA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 TRVAGPPFKANTLIAFTKLLGAPTHILRDCVHIMKLELFPDQATQLKWNVQFCLTIPPSA 1180 1190 1200 1210 1220 1230 1350 1360 1370 1380 1390 1400 pF1KB9 PPIAPPGTPAVVLKSKMLFFLQLTQKTSVPPQEPVSIIVPIIYDMASGTTQQADIPRQQN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 PPIAPPGTPAVVLKSKMLFFLQLTQKTSVPPQEPVSIIVPIIYDMASGTTQQADIPRQQN 1240 1250 1260 1270 1280 1290 1410 1420 1430 1440 1450 pF1KB9 SSVAAPMMVSNILKRFAEMNPPRQGECTIFAAVRDLMANLTLPPGGRP :::::::::::::::::::::::::::::::::::::::::::::::: XP_005 SSVAAPMMVSNILKRFAEMNPPRQGECTIFAAVRDLMANLTLPPGGRP 1300 1310 1320 1330 1454 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 12:49:42 2016 done: Sun Nov 6 12:49:45 2016 Total Scan time: 17.400 Total Display time: 0.230 Function used was FASTA [36.3.4 Apr, 2011]