Result of FASTA (ccds) for
pFN21AB9455
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB9455, 1454 aa
1>>>pF1KB9455 1454 - 1454 aa - 1454 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 11.2479+/-0.00109; mu= -2.8528+/- 0.066
mean_var=353.2539+/-73.099, 0's: 0 Z-trim(113.3): 27 B-trim: 7 in 1/53
Lambda= 0.068239
statistics sampled from 13906 (13917) to 13906 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.718), E-opt: 0.2 (0.428), width: 16
Scan time: 5.230
The best scores are: opt bits E(32554)
CCDS14254.1 MED14 gene_id:9282|Hs108|chrX (1454) 9762 976.3 0
>>CCDS14254.1 MED14 gene_id:9282|Hs108|chrX (1454 aa)
initn: 9762 init1: 9762 opt: 9762 Z-score: 5208.5 bits: 976.3 E(32554): 0
Smith-Waterman score: 9762; 99.9% identity (100.0% similar) in 1454 aa overlap (1-1454:1-1454)
10 20 30 40 50 60
pF1KB9 MAPVQLENHQLVPPGGGGGGSGGPPSAPAPPPPGAAVAAAAAAAASPGYRLSTLIEFLLH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MAPVQLENHQLVPPGGGGGGSGGPPSAPAPPPPGAAVAAAAAAAASPGYRLSTLIEFLLH
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 RAYSELMVLTDLLPRKSDVERKIEIVQFASRTRQLFVRLLALVKWANNAGKVEKCAMISS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 RAYSELMVLTDLLPRKSDVERKIEIVQFASRTRQLFVRLLALVKWANNAGKVEKCAMISS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 FLDQQAILFVDTADRLASLARDALVHARLPSFAIPYAIDVLTTGSYPRLPTCIRDKIIPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 FLDQQAILFVDTADRLASLARDALVHARLPSFAIPYAIDVLTTGSYPRLPTCIRDKIIPP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 DPITKIEKQATLHQLNQILRHRLVTTDLPPQLANLTVANGRVKFRVEGEFEATLTVMGDD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 DPITKIEKQATLHQLNQILRHRLVTTDLPPQLANLTVANGRVKFRVEGEFEATLTVMGDD
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 PDVPWRLLKLEILVEDKETGDGRALVHSMQISFIHQLVQSRLFADEKPLQDMYNCLHSFC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 PDVPWRLLKLEILVEDKETGDGRALVHSMQISFIHQLVQSRLFADEKPLQDMYNCLHSFC
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB9 LSLQLEVLHSQTLMLIRERWGDLVQVERYHAGKCLSLSVWNQQVLGRKTGTASVHKVTIK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 LSLQLEVLHSQTLMLIRERWGDLVQVERYHAGKCLSLSVWNQQVLGRKTGTASVHKVTIK
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB9 IDENDVSKPLQIFHDPPLPASDSKLVERAMKIDHLSIEKLLIDSVHARAHQKLQELKAIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 IDENDVSKPLQIFHDPPLPASDSKLVERAMKIDHLSIEKLLIDSVHARAHQKLQELKAIL
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB9 RGFNANENSSIETALPALVVPILEPCGNSECLHIFVDLHSGMFQLMLYGLDQATLDDMEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 RGFNANENSSIETALPALVVPILEPCGNSECLHIFVDLHSGMFQLMLYGLDQATLDDMEK
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB9 SVNDDMKRIIPWIQQLKFWLGQQRCKQSIKHLPTISSETLQLSNYSTHPIGNLSKNKLFI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 SVNDDMKRIIPWIQQLKFWLGQQRCKQSIKHLPTISSETLQLSNYSTHPIGNLSKNKLFI
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB9 KLTRLPQYYIVVEMLEVPNKPTQLSYKYYFMSVNAADREDSPAMALLLQQFKENIQDLVF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 KLTRLPQYYIVVEMLEVPNKPTQLSYKYYFMSVNAADREDSPAMALLLQQFKENIQDLVF
550 560 570 580 590 600
610 620 630 640 650 660
pF1KB9 RTKTGKQTRTNAKRKLSDDPCPVESKKTKRAGEMCAFNKVLAHFVAMCDTNMPFVGLRLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 RTKTGKQTRTNAKRKLSDDPCPVESKKTKRAGEMCAFNKVLAHFVAMCDTNMPFVGLRLE
610 620 630 640 650 660
670 680 690 700 710 720
pF1KB9 LSNLEIPHQGVQVEGDGFSHAIRLLKIPPCKGITEETQKALDRSLLDCTFRLQGRNNRTW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 LSNLEIPHQGVQVEGDGFSHAIRLLKIPPCKGITEETQKALDRSLLDCTFRLQGRNNRTW
670 680 690 700 710 720
730 740 750 760 770 780
pF1KB9 VAELVFANCPLNGTSTREQGPSRHVYLTYENLLSEPVGGRKVVEMFLNDWNSIARLYECV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 VAELVFANCPLNGTSTREQGPSRHVYLTYENLLSEPVGGRKVVEMFLNDWNSIARLYECV
730 740 750 760 770 780
790 800 810 820 830 840
pF1KB9 LEFARSLPDIPAHLNIFSEVRVYNYRKLILCYGTTKGSSISIQWNSIHQKFHISLGTVGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 LEFARSLPDIPAHLNIFSEVRVYNYRKLILCYGTTKGSSISIQWNSIHQKFHISLGTVGP
790 800 810 820 830 840
850 860 870 880 890 900
pF1KB9 NSGCSNCHNTILHQLQEMFNKTPNVVQLLQVLFDTQAPLNAINKLPTVPMLGLTQRTNTA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 NSGCSNCHNTILHQLQEMFNKTPNVVQLLQVLFDTQAPLNAINKLPTVPMLGLTQRTNTA
850 860 870 880 890 900
910 920 930 940 950 960
pF1KB9 YQCFSILPQSSTHIRLAFRNMYCIDIYCRSRGVVAIRDGAYSLFDNSKLVEGFYPAPGLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 YQCFSILPQSSTHIRLAFRNMYCIDIYCRSRGVVAIRDGAYSLFDNSKLVEGFYPAPGLK
910 920 930 940 950 960
970 980 990 1000 1010 1020
pF1KB9 TFLNMFVDSNQDARRRSVNEDDNPPSPIGGDMMDSLISQLHPPPQQQPFPKQPGTSGAYP
::::::::::::::::::::::::::::::::::::::::.:::::::::::::::::::
CCDS14 TFLNMFVDSNQDARRRSVNEDDNPPSPIGGDMMDSLISQLQPPPQQQPFPKQPGTSGAYP
970 980 990 1000 1010 1020
1030 1040 1050 1060 1070 1080
pF1KB9 LTSPPTSYHSTVNQSPSMMHTQSPGNLHAASSPSGALRAPSPASFVPTPPPSSHGISIGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 LTSPPTSYHSTVNQSPSMMHTQSPGNLHAASSPSGALRAPSPASFVPTPPPSSHGISIGP
1030 1040 1050 1060 1070 1080
1090 1100 1110 1120 1130 1140
pF1KB9 GASFASPHGTLDPSSPYTMVSPSGRAGNWPGSPQVSGPSPAARMPGMSPANPSLHSPVPD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 GASFASPHGTLDPSSPYTMVSPSGRAGNWPGSPQVSGPSPAARMPGMSPANPSLHSPVPD
1090 1100 1110 1120 1130 1140
1150 1160 1170 1180 1190 1200
pF1KB9 ASHSPRAGTSSQTMPTNMPPPRKLPQRSWAASIPTILTHSALNILLLPSPTPGLVPGLAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 ASHSPRAGTSSQTMPTNMPPPRKLPQRSWAASIPTILTHSALNILLLPSPTPGLVPGLAG
1150 1160 1170 1180 1190 1200
1210 1220 1230 1240 1250 1260
pF1KB9 SYLCSPLERFLGSVIMRRHLQRIIQQETLQLINSNEPGVIMFKTDALKCRVALSPKTNQT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 SYLCSPLERFLGSVIMRRHLQRIIQQETLQLINSNEPGVIMFKTDALKCRVALSPKTNQT
1210 1220 1230 1240 1250 1260
1270 1280 1290 1300 1310 1320
pF1KB9 LQLKVTPENAGQWKPDELQVLEKFFETRVAGPPFKANTLIAFTKLLGAPTHILRDCVHIM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 LQLKVTPENAGQWKPDELQVLEKFFETRVAGPPFKANTLIAFTKLLGAPTHILRDCVHIM
1270 1280 1290 1300 1310 1320
1330 1340 1350 1360 1370 1380
pF1KB9 KLELFPDQATQLKWNVQFCLTIPPSAPPIAPPGTPAVVLKSKMLFFLQLTQKTSVPPQEP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 KLELFPDQATQLKWNVQFCLTIPPSAPPIAPPGTPAVVLKSKMLFFLQLTQKTSVPPQEP
1330 1340 1350 1360 1370 1380
1390 1400 1410 1420 1430 1440
pF1KB9 VSIIVPIIYDMASGTTQQADIPRQQNSSVAAPMMVSNILKRFAEMNPPRQGECTIFAAVR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 VSIIVPIIYDMASGTTQQADIPRQQNSSVAAPMMVSNILKRFAEMNPPRQGECTIFAAVR
1390 1400 1410 1420 1430 1440
1450
pF1KB9 DLMANLTLPPGGRP
::::::::::::::
CCDS14 DLMANLTLPPGGRP
1450
1454 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 12:49:41 2016 done: Sun Nov 6 12:49:42 2016
Total Scan time: 5.230 Total Display time: 0.080
Function used was FASTA [36.3.4 Apr, 2011]