FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6296, 183 aa 1>>>pF1KE6296 183 - 183 aa - 183 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.3170+/-0.000363; mu= 12.5331+/- 0.023 mean_var=59.1467+/-11.764, 0's: 0 Z-trim(113.1): 27 B-trim: 1301 in 1/51 Lambda= 0.166766 statistics sampled from 22203 (22222) to 22203 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.647), E-opt: 0.2 (0.261), width: 16 Scan time: 3.970 The best scores are: opt bits E(85289) NP_114100 (OMIM: 300308) ferritin heavy polypeptid ( 183) 1228 303.6 1.2e-82 NP_002023 (OMIM: 134770,615517) ferritin heavy cha ( 183) 800 200.6 1.2e-51 NP_803431 (OMIM: 608847) ferritin, mitochondrial p ( 242) 752 189.1 4.5e-48 NP_000137 (OMIM: 134790,600886,606159,615604) ferr ( 175) 576 146.7 1.9e-35 >>NP_114100 (OMIM: 300308) ferritin heavy polypeptide-li (183 aa) initn: 1228 init1: 1228 opt: 1228 Z-score: 1604.9 bits: 303.6 E(85289): 1.2e-82 Smith-Waterman score: 1228; 100.0% identity (100.0% similar) in 183 aa overlap (1-183:1-183) 10 20 30 40 50 60 pF1KE6 MATAQPSQVRQKYDTNCDAAINSHITLELYTSYLYLSMAFYFNRDDVALENFFRYFLRLS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_114 MATAQPSQVRQKYDTNCDAAINSHITLELYTSYLYLSMAFYFNRDDVALENFFRYFLRLS 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 DDKMEHAQKLMRLQNLRGGHICLHDIRKPECQGWESGLVAMESAFHLEKNVNQSLLDLYQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_114 DDKMEHAQKLMRLQNLRGGHICLHDIRKPECQGWESGLVAMESAFHLEKNVNQSLLDLYQ 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 LAVEKGDPQLCHFLESHYLHEQVKTIKELGGYVSNLRKICSPEAGLAEYLFDKLTLGGRV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_114 LAVEKGDPQLCHFLESHYLHEQVKTIKELGGYVSNLRKICSPEAGLAEYLFDKLTLGGRV 130 140 150 160 170 180 pF1KE6 KET ::: NP_114 KET >>NP_002023 (OMIM: 134770,615517) ferritin heavy chain [ (183 aa) initn: 798 init1: 798 opt: 800 Z-score: 1048.4 bits: 200.6 E(85289): 1.2e-51 Smith-Waterman score: 800; 65.0% identity (88.5% similar) in 183 aa overlap (1-183:1-183) 10 20 30 40 50 60 pF1KE6 MATAQPSQVRQKYDTNCDAAINSHITLELYTSYLYLSMAFYFNRDDVALENFFRYFLRLS :.::. :::::.: . .:::: .:.::::.::.::::..::.::::::.:: .:::. : NP_002 MTTASTSQVRQNYHQDSEAAINRQINLELYASYVYLSMSYYFDRDDVALKNFAKYFLHQS 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 DDKMEHAQKLMRLQNLRGGHICLHDIRKPECQGWESGLVAMESAFHLEKNVNQSLLDLYQ .. :::.:::.::: :::.: :.::.::.:. ::::: ::: :.:::::::::::.:.. NP_002 HEEREHAEKLMKLQNQRGGRIFLQDIKKPDCDDWESGLNAMECALHLEKNVNQSLLELHK 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 LAVEKGDPQLCHFLESHYLHEQVKTIKELGGYVSNLRKICSPEAGLAEYLFDKLTLGGRV ::..:.::.:: :.:.:::.::::.::::: .:.::::. .::.::::::::: ::: NP_002 LATDKNDPHLCDFIETHYLNEQVKAIKELGDHVTNLRKMGAPESGLAEYLFDKHTLGDSD 130 140 150 160 170 180 pF1KE6 KET .:. NP_002 NES >>NP_803431 (OMIM: 608847) ferritin, mitochondrial precu (242 aa) initn: 765 init1: 749 opt: 752 Z-score: 984.0 bits: 189.1 E(85289): 4.5e-48 Smith-Waterman score: 752; 65.4% identity (85.5% similar) in 179 aa overlap (4-182:63-241) 10 20 30 pF1KE6 MATAQPSQVRQKYDTNCDAAINSHITLELYTSY : ::.:::.. . .:::: .:.::::.:: NP_803 APGRPLDPRQIAPRRPLAAAASSRDPTGPAAGPSRVRQNFHPDSEAAINRQINLELYASY 40 50 60 70 80 90 40 50 60 70 80 90 pF1KE6 LYLSMAFYFNRDDVALENFFRYFLRLSDDKMEHAQKLMRLQNLRGGHICLHDIRKPECQG .:::::.::.::::::.:: ::::. : .. :::.::::::: :::.: :.::.::: . NP_803 VYLSMAYYFSRDDVALNNFSRYFLHQSREETEHAEKLMRLQNQRGGRIRLQDIKKPEQDD 100 110 120 130 140 150 100 110 120 130 140 150 pF1KE6 WESGLVAMESAFHLEKNVNQSLLDLYQLAVEKGDPQLCHFLESHYLHEQVKTIKELGGYV ::::: ::: :. ::::::::::.:. :: .::::.:: :::..::.::::.::::: .: NP_803 WESGLHAMECALLLEKNVNQSLLELHALASDKGDPHLCDFLETYYLNEQVKSIKELGDHV 160 170 180 190 200 210 160 170 180 pF1KE6 SNLRKICSPEAGLAEYLFDKLTLGGRVKET :: :. .:.::::::::: :::.. :. NP_803 HNLVKMGAPDAGLAEYLFDTHTLGNENKQN 220 230 240 >>NP_000137 (OMIM: 134790,600886,606159,615604) ferritin (175 aa) initn: 576 init1: 576 opt: 576 Z-score: 757.4 bits: 146.7 E(85289): 1.9e-35 Smith-Waterman score: 576; 49.4% identity (81.8% similar) in 170 aa overlap (7-176:3-172) 10 20 30 40 50 60 pF1KE6 MATAQPSQVRQKYDTNCDAAINSHITLELYTSYLYLSMAFYFNRDDVALENFFRYFLRLS ::.::.:.:. .::.:: ..: : .:: :::..:::.:::::::. ..: .:. NP_000 MSSQIRQNYSTDVEAAVNSLVNLYLQASYTYLSLGFYFDRDDVALEGVSHFFRELA 10 20 30 40 50 70 80 90 100 110 120 pF1KE6 DDKMEHAQKLMRLQNLRGGHICLHDIRKPECQGWESGLVAMESAFHLEKNVNQSLLDLYQ ..: : ..:...:: :::. ..::.:: . : . ::..:. :::..::.::::. NP_000 EEKREGYERLLKMQNQRGGRALFQDIKKPAEDEWGKTPDAMKAAMALEKKLNQALLDLHA 60 70 80 90 100 110 130 140 150 160 170 180 pF1KE6 LAVEKGDPQLCHFLESHYLHEQVKTIKELGGYVSNLRKICSPEAGLAEYLFDKLTLGGRV :. . ::.:: :::.:.: :.:: ::..: ...::... .:::::.::::..::: NP_000 LGSARTDPHLCDFLETHFLDEEVKLIKKMGDHLTNLHRLGGPEAGLGEYLFERLTLKHD 120 130 140 150 160 170 pF1KE6 KET 183 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 11:52:52 2016 done: Tue Nov 8 11:52:53 2016 Total Scan time: 3.970 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]