FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5636, 482 aa
  1>>>pF1KE5636 482 - 482 aa - 482 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.7197+/-0.00117; mu= -3.2196+/- 0.070
 mean_var=480.6449+/-98.488, 0's: 0 Z-trim(114.0): 85  B-trim: 342 in 1/53
 Lambda= 0.058501
 statistics sampled from 14549 (14619) to 14549 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.756), E-opt: 0.2 (0.449), width:  16
 Scan time:  2.660

The best scores are:                                      opt bits E(32554)
CCDS14172.1 ZRSR2 gene_id:8233|Hs108|chrX          ( 482) 3302 293.2 4.2e-79


>>CCDS14172.1 ZRSR2 gene_id:8233|Hs108|chrX               (482 aa)
 initn: 3302 init1: 3302 opt: 3302  Z-score: 1533.6  bits: 293.2 E(32554): 4.2e-79
Smith-Waterman score: 3302; 100.0% identity (100.0% similar) in 482 aa overlap (1-482:1-482)

               10        20        30        40        50        60
pF1KE5 MAAPEKMTFPEKPSHKKYRAALKKEKRKKRRQELARLRDSGLSQKEEEEDTFIEEQQLEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MAAPEKMTFPEKPSHKKYRAALKKEKRKKRRQELARLRDSGLSQKEEEEDTFIEEQQLEE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 EKLLERERQRLHEEWLLREQKAQEEFRIKKEKEEAAKKRQEEQERKLKEQWEEQQRKERE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 EKLLERERQRLHEEWLLREQKAQEEFRIKKEKEEAAKKRQEEQERKLKEQWEEQQRKERE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 EEEQKRQEKKEKEEALQKMLDQAENELENGTTWQNPEPPVDFRVMEKDRANCPFYSKTGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 EEEQKRQEKKEKEEALQKMLDQAENELENGTTWQNPEPPVDFRVMEKDRANCPFYSKTGA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE5 CRFGDRCSRKHNFPTSSPTLLIKSMFTTFGMEQCRRDDYDPDASLEYSEEETYQQFLDFY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 CRFGDRCSRKHNFPTSSPTLLIKSMFTTFGMEQCRRDDYDPDASLEYSEEETYQQFLDFY
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE5 EDVLPEFKNVGKVIQFKVSCNLEPHLRGNVYVQYQSEEECQAALSLFNGRWYAGRQLQCE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 EDVLPEFKNVGKVIQFKVSCNLEPHLRGNVYVQYQSEEECQAALSLFNGRWYAGRQLQCE
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE5 FCPVTRWKMAICGLFEIQQCPRGKHCNFLHVFRNPNNEFWEANRDIYLSPDRTGSSFGKN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 FCPVTRWKMAICGLFEIQQCPRGKHCNFLHVFRNPNNEFWEANRDIYLSPDRTGSSFGKN
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE5 SERRERMGHHDDYYSRLRGRRNPSPDHSYKRNGESERKSSRHRGKKSHKRTSKSRERHNS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 SERRERMGHHDDYYSRLRGRRNPSPDHSYKRNGESERKSSRHRGKKSHKRTSKSRERHNS
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE5 RSRGRNRDRSRDRSRGRGSRSRSRSRSRRSRRSRSQSSSRSRSRGRRRSGNRDRTVQSPK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 RSRGRNRDRSRDRSRGRGSRSRSRSRSRRSRRSRSQSSSRSRSRGRRRSGNRDRTVQSPK
              430       440       450       460       470       480

         
pF1KE5 SK
       ::
CCDS14 SK
         




482 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 05:24:35 2016 done: Tue Nov  8 05:24:36 2016
 Total Scan time:  2.660 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]