FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6607, 268 aa
  1>>>pF1KE6607 268 - 268 aa - 268 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.9028+/-0.000301; mu= 8.8494+/- 0.019
 mean_var=120.9114+/-25.107, 0's: 0 Z-trim(121.3): 6  B-trim: 1595 in 1/54
 Lambda= 0.116638
 statistics sampled from 37755 (37761) to 37755 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.781), E-opt: 0.2 (0.443), width:  16
 Scan time:  4.740

The best scores are:                                      opt bits E(85289)
NP_001116080 (OMIM: 300056,309801) cytochrome c-ty ( 268) 1924 333.9 1.9e-91
NP_005324 (OMIM: 300056,309801) cytochrome c-type  ( 268) 1924 333.9 1.9e-91
NP_001165462 (OMIM: 300056,309801) cytochrome c-ty ( 268) 1924 333.9 1.9e-91


>>NP_001116080 (OMIM: 300056,309801) cytochrome c-type h  (268 aa)
 initn: 1924 init1: 1924 opt: 1924  Z-score: 1762.9  bits: 333.9 E(85289): 1.9e-91
Smith-Waterman score: 1924; 100.0% identity (100.0% similar) in 268 aa overlap (1-268:1-268)

               10        20        30        40        50        60
pF1KE6 MGLSPSAPAVAVQASNASASPPSGCPMHEGKMKGCPVNTEPSGPTCEKKTYSVPAHQERA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MGLSPSAPAVAVQASNASASPPSGCPMHEGKMKGCPVNTEPSGPTCEKKTYSVPAHQERA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 YEYVECPIRGTAAENKENLDPSNLMPPPNQTPAPDQPFALSTVREESSIPRADSEKKWVY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YEYVECPIRGTAAENKENLDPSNLMPPPNQTPAPDQPFALSTVREESSIPRADSEKKWVY
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 PSEQMFWNAMLKKGWKWKDEDISQKDMYNIIRIHNQNNEQAWKEILKWEALHAAECPCGP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PSEQMFWNAMLKKGWKWKDEDISQKDMYNIIRIHNQNNEQAWKEILKWEALHAAECPCGP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 SLIRFGGKAKEYSPRARIRSWMGYELPFDRHDWIINRCGTEVRYVIDYYDGGEVNKDYQF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SLIRFGGKAKEYSPRARIRSWMGYELPFDRHDWIINRCGTEVRYVIDYYDGGEVNKDYQF
              190       200       210       220       230       240

              250       260        
pF1KE6 TILDVRPALDSLSAVWDRMKVAWWRWTS
       ::::::::::::::::::::::::::::
NP_001 TILDVRPALDSLSAVWDRMKVAWWRWTS
              250       260        

>>NP_005324 (OMIM: 300056,309801) cytochrome c-type heme  (268 aa)
 initn: 1924 init1: 1924 opt: 1924  Z-score: 1762.9  bits: 333.9 E(85289): 1.9e-91
Smith-Waterman score: 1924; 100.0% identity (100.0% similar) in 268 aa overlap (1-268:1-268)

               10        20        30        40        50        60
pF1KE6 MGLSPSAPAVAVQASNASASPPSGCPMHEGKMKGCPVNTEPSGPTCEKKTYSVPAHQERA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MGLSPSAPAVAVQASNASASPPSGCPMHEGKMKGCPVNTEPSGPTCEKKTYSVPAHQERA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 YEYVECPIRGTAAENKENLDPSNLMPPPNQTPAPDQPFALSTVREESSIPRADSEKKWVY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 YEYVECPIRGTAAENKENLDPSNLMPPPNQTPAPDQPFALSTVREESSIPRADSEKKWVY
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 PSEQMFWNAMLKKGWKWKDEDISQKDMYNIIRIHNQNNEQAWKEILKWEALHAAECPCGP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 PSEQMFWNAMLKKGWKWKDEDISQKDMYNIIRIHNQNNEQAWKEILKWEALHAAECPCGP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 SLIRFGGKAKEYSPRARIRSWMGYELPFDRHDWIINRCGTEVRYVIDYYDGGEVNKDYQF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 SLIRFGGKAKEYSPRARIRSWMGYELPFDRHDWIINRCGTEVRYVIDYYDGGEVNKDYQF
              190       200       210       220       230       240

              250       260        
pF1KE6 TILDVRPALDSLSAVWDRMKVAWWRWTS
       ::::::::::::::::::::::::::::
NP_005 TILDVRPALDSLSAVWDRMKVAWWRWTS
              250       260        

>>NP_001165462 (OMIM: 300056,309801) cytochrome c-type h  (268 aa)
 initn: 1924 init1: 1924 opt: 1924  Z-score: 1762.9  bits: 333.9 E(85289): 1.9e-91
Smith-Waterman score: 1924; 100.0% identity (100.0% similar) in 268 aa overlap (1-268:1-268)

               10        20        30        40        50        60
pF1KE6 MGLSPSAPAVAVQASNASASPPSGCPMHEGKMKGCPVNTEPSGPTCEKKTYSVPAHQERA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MGLSPSAPAVAVQASNASASPPSGCPMHEGKMKGCPVNTEPSGPTCEKKTYSVPAHQERA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 YEYVECPIRGTAAENKENLDPSNLMPPPNQTPAPDQPFALSTVREESSIPRADSEKKWVY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YEYVECPIRGTAAENKENLDPSNLMPPPNQTPAPDQPFALSTVREESSIPRADSEKKWVY
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 PSEQMFWNAMLKKGWKWKDEDISQKDMYNIIRIHNQNNEQAWKEILKWEALHAAECPCGP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PSEQMFWNAMLKKGWKWKDEDISQKDMYNIIRIHNQNNEQAWKEILKWEALHAAECPCGP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 SLIRFGGKAKEYSPRARIRSWMGYELPFDRHDWIINRCGTEVRYVIDYYDGGEVNKDYQF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SLIRFGGKAKEYSPRARIRSWMGYELPFDRHDWIINRCGTEVRYVIDYYDGGEVNKDYQF
              190       200       210       220       230       240

              250       260        
pF1KE6 TILDVRPALDSLSAVWDRMKVAWWRWTS
       ::::::::::::::::::::::::::::
NP_001 TILDVRPALDSLSAVWDRMKVAWWRWTS
              250       260        




268 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 14:43:26 2016 done: Tue Nov  8 14:43:27 2016
 Total Scan time:  4.740 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]