FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6607, 268 aa
  1>>>pF1KE6607 268 - 268 aa - 268 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.8592+/-0.000707; mu= 8.9279+/- 0.043
 mean_var=113.7148+/-22.352, 0's: 0 Z-trim(113.8): 7  B-trim: 0 in 0/52
 Lambda= 0.120272
 statistics sampled from 14359 (14361) to 14359 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.788), E-opt: 0.2 (0.441), width:  16
 Scan time:  1.740

The best scores are:                                      opt bits E(32554)
CCDS14139.1 HCCS gene_id:3052|Hs108|chrX           ( 268) 1924 343.8 7.6e-95


>>CCDS14139.1 HCCS gene_id:3052|Hs108|chrX                (268 aa)
 initn: 1924 init1: 1924 opt: 1924  Z-score: 1816.3  bits: 343.8 E(32554): 7.6e-95
Smith-Waterman score: 1924; 100.0% identity (100.0% similar) in 268 aa overlap (1-268:1-268)

               10        20        30        40        50        60
pF1KE6 MGLSPSAPAVAVQASNASASPPSGCPMHEGKMKGCPVNTEPSGPTCEKKTYSVPAHQERA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MGLSPSAPAVAVQASNASASPPSGCPMHEGKMKGCPVNTEPSGPTCEKKTYSVPAHQERA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 YEYVECPIRGTAAENKENLDPSNLMPPPNQTPAPDQPFALSTVREESSIPRADSEKKWVY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 YEYVECPIRGTAAENKENLDPSNLMPPPNQTPAPDQPFALSTVREESSIPRADSEKKWVY
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 PSEQMFWNAMLKKGWKWKDEDISQKDMYNIIRIHNQNNEQAWKEILKWEALHAAECPCGP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 PSEQMFWNAMLKKGWKWKDEDISQKDMYNIIRIHNQNNEQAWKEILKWEALHAAECPCGP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 SLIRFGGKAKEYSPRARIRSWMGYELPFDRHDWIINRCGTEVRYVIDYYDGGEVNKDYQF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 SLIRFGGKAKEYSPRARIRSWMGYELPFDRHDWIINRCGTEVRYVIDYYDGGEVNKDYQF
              190       200       210       220       230       240

              250       260        
pF1KE6 TILDVRPALDSLSAVWDRMKVAWWRWTS
       ::::::::::::::::::::::::::::
CCDS14 TILDVRPALDSLSAVWDRMKVAWWRWTS
              250       260        




268 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 14:43:25 2016 done: Tue Nov  8 14:43:26 2016
 Total Scan time:  1.740 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]