Result of FASTA (ccds) for
pFN21AE3529
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3529, 229 aa
1>>>pF1KE3529 229 - 229 aa - 229 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.6397+/-0.000983; mu= 12.8592+/- 0.060
mean_var=81.9660+/-16.625, 0's: 0 Z-trim(105.9): 178 B-trim: 247 in 1/50
Lambda= 0.141663
statistics sampled from 8482 (8685) to 8482 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.64), E-opt: 0.2 (0.267), width: 16
Scan time: 2.090
The best scores are: opt bits E(32554)
CCDS33683.1 RABL2B gene_id:11158|Hs108|chr22 ( 229) 1508 317.7 3.9e-87
CCDS77454.1 RABL2A gene_id:11159|Hs108|chr2 ( 229) 1498 315.7 1.6e-86
CCDS14102.1 RABL2B gene_id:11158|Hs108|chr22 ( 228) 1491 314.3 4.3e-86
CCDS2118.1 RABL2A gene_id:11159|Hs108|chr2 ( 228) 1481 312.2 1.8e-85
CCDS46738.1 RABL2B gene_id:11158|Hs108|chr22 ( 238) 1115 237.4 6e-63
CCDS77455.1 RABL2A gene_id:11159|Hs108|chr2 ( 238) 1110 236.4 1.2e-62
CCDS77456.1 RABL2A gene_id:11159|Hs108|chr2 ( 165) 585 129.0 1.8e-30
CCDS14156.1 RAB9A gene_id:9367|Hs108|chrX ( 201) 348 80.6 8.1e-16
CCDS14515.1 RAB9B gene_id:51209|Hs108|chrX ( 201) 348 80.6 8.1e-16
CCDS3052.1 RAB7A gene_id:7879|Hs108|chr3 ( 207) 333 77.6 7e-15
CCDS76691.1 RAB15 gene_id:376267|Hs108|chr14 ( 212) 332 77.4 8.2e-15
CCDS41846.1 RAB35 gene_id:11021|Hs108|chr12 ( 201) 331 77.1 9e-15
CCDS7155.1 RAB18 gene_id:22931|Hs108|chr10 ( 206) 331 77.1 9.2e-15
CCDS12201.1 RAB11B gene_id:9230|Hs108|chr19 ( 218) 330 77.0 1.1e-14
CCDS31613.1 RAB1B gene_id:81876|Hs108|chr11 ( 201) 328 76.5 1.4e-14
CCDS8264.1 RAB30 gene_id:27314|Hs108|chr11 ( 203) 328 76.5 1.4e-14
CCDS10212.1 RAB11A gene_id:8766|Hs108|chr15 ( 216) 327 76.3 1.7e-14
CCDS10460.1 RAB26 gene_id:25837|Hs108|chr16 ( 256) 324 75.8 2.9e-14
CCDS11703.1 RAB37 gene_id:326624|Hs108|chr17 ( 216) 322 75.3 3.4e-14
CCDS46306.1 RAB1A gene_id:5861|Hs108|chr2 ( 205) 321 75.1 3.8e-14
CCDS42410.1 RAB12 gene_id:201475|Hs108|chr18 ( 244) 315 73.9 1e-13
CCDS76806.1 RAB26 gene_id:25837|Hs108|chr16 ( 190) 309 72.6 1.9e-13
CCDS6827.1 RAB14 gene_id:51552|Hs108|chr9 ( 215) 306 72.0 3.3e-13
CCDS3747.1 RAB33B gene_id:83452|Hs108|chr4 ( 229) 306 72.1 3.5e-13
CCDS14621.1 RAB33A gene_id:9363|Hs108|chrX ( 237) 303 71.5 5.4e-13
CCDS9271.1 RAN gene_id:5901|Hs108|chr12 ( 216) 298 70.4 1e-12
CCDS8223.1 RAB6A gene_id:5870|Hs108|chr11 ( 208) 297 70.2 1.1e-12
CCDS54161.1 RAB37 gene_id:326624|Hs108|chr17 ( 228) 297 70.2 1.2e-12
CCDS8900.1 RAB5B gene_id:5869|Hs108|chr12 ( 215) 295 69.8 1.6e-12
CCDS58373.1 RAB11A gene_id:8766|Hs108|chr15 ( 155) 292 69.1 1.8e-12
CCDS82198.1 RAB37 gene_id:326624|Hs108|chr17 ( 196) 292 69.2 2.2e-12
CCDS32722.1 RAB37 gene_id:326624|Hs108|chr17 ( 223) 292 69.2 2.5e-12
CCDS8224.1 RAB6A gene_id:5870|Hs108|chr11 ( 208) 291 69.0 2.7e-12
CCDS3082.1 RAB6B gene_id:51560|Hs108|chr3 ( 208) 290 68.8 3.1e-12
CCDS4962.1 RAB23 gene_id:51715|Hs108|chr6 ( 237) 290 68.8 3.4e-12
CCDS11419.1 RAB5C gene_id:5878|Hs108|chr17 ( 216) 289 68.6 3.7e-12
CCDS58551.1 RAB5C gene_id:5878|Hs108|chr17 ( 249) 289 68.6 4.1e-12
CCDS6175.1 RAB2A gene_id:5862|Hs108|chr8 ( 212) 288 68.4 4.2e-12
CCDS2633.1 RAB5A gene_id:5868|Hs108|chr3 ( 215) 287 68.2 4.8e-12
CCDS9570.1 RAB2B gene_id:84932|Hs108|chr14 ( 216) 287 68.2 4.9e-12
CCDS33030.1 RAB4B gene_id:53916|Hs108|chr19 ( 213) 285 67.8 6.4e-12
CCDS33497.1 RAB22A gene_id:57403|Hs108|chr20 ( 194) 284 67.5 6.8e-12
CCDS1720.1 RAB10 gene_id:10890|Hs108|chr2 ( 200) 283 67.3 8.1e-12
CCDS1459.1 RAB29 gene_id:8934|Hs108|chr1 ( 203) 282 67.1 9.4e-12
CCDS12339.1 RAB8A gene_id:4218|Hs108|chr19 ( 207) 282 67.1 9.5e-12
CCDS1058.1 RAB13 gene_id:5872|Hs108|chr1 ( 203) 280 66.7 1.2e-11
CCDS9003.1 RAB21 gene_id:23011|Hs108|chr12 ( 225) 280 66.7 1.4e-11
CCDS34762.2 RAB19 gene_id:401409|Hs108|chr7 ( 217) 277 66.1 2e-11
CCDS12372.1 RAB3A gene_id:5864|Hs108|chr19 ( 220) 276 65.9 2.3e-11
CCDS14766.1 RAB39B gene_id:116442|Hs108|chrX ( 213) 275 65.7 2.6e-11
>>CCDS33683.1 RABL2B gene_id:11158|Hs108|chr22 (229 aa)
initn: 1508 init1: 1508 opt: 1508 Z-score: 1677.9 bits: 317.7 E(32554): 3.9e-87
Smith-Waterman score: 1508; 100.0% identity (100.0% similar) in 229 aa overlap (1-229:1-229)
10 20 30 40 50 60
pF1KE3 MAEDKTKPSELDQGKYDADDNVKIICLGDSAVGKSKLMERFLMDGFQPQQLSTYALTLYK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MAEDKTKPSELDQGKYDADDNVKIICLGDSAVGKSKLMERFLMDGFQPQQLSTYALTLYK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 HTATVDGRTILVDFWDTAGQERFQSMHASYYHKAHACIMVFDVQRKVTYRNLSTWYTELR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 HTATVDGRTILVDFWDTAGQERFQSMHASYYHKAHACIMVFDVQRKVTYRNLSTWYTELR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 EFRPEIPCIVVANKIDADINVTQKSFNFAKKFSLPLYFVSAADGTNVVKLFNDAIRLAVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 EFRPEIPCIVVANKIDADINVTQKSFNFAKKFSLPLYFVSAADGTNVVKLFNDAIRLAVS
130 140 150 160 170 180
190 200 210 220
pF1KE3 YKQNSQDFMDEIFQELENFSLEQEEEDVPDQEQSSSIETPSEEAASPHS
:::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 YKQNSQDFMDEIFQELENFSLEQEEEDVPDQEQSSSIETPSEEAASPHS
190 200 210 220
>>CCDS77454.1 RABL2A gene_id:11159|Hs108|chr2 (229 aa)
initn: 1498 init1: 1498 opt: 1498 Z-score: 1666.9 bits: 315.7 E(32554): 1.6e-86
Smith-Waterman score: 1498; 98.7% identity (100.0% similar) in 229 aa overlap (1-229:1-229)
10 20 30 40 50 60
pF1KE3 MAEDKTKPSELDQGKYDADDNVKIICLGDSAVGKSKLMERFLMDGFQPQQLSTYALTLYK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 MAEDKTKPSELDQGKYDADDNVKIICLGDSAVGKSKLMERFLMDGFQPQQLSTYALTLYK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 HTATVDGRTILVDFWDTAGQERFQSMHASYYHKAHACIMVFDVQRKVTYRNLSTWYTELR
:::::::.::::::::::::::::::::::::::::::::::.:::::::::::::::::
CCDS77 HTATVDGKTILVDFWDTAGQERFQSMHASYYHKAHACIMVFDIQRKVTYRNLSTWYTELR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 EFRPEIPCIVVANKIDADINVTQKSFNFAKKFSLPLYFVSAADGTNVVKLFNDAIRLAVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 EFRPEIPCIVVANKIDADINVTQKSFNFAKKFSLPLYFVSAADGTNVVKLFNDAIRLAVS
130 140 150 160 170 180
190 200 210 220
pF1KE3 YKQNSQDFMDEIFQELENFSLEQEEEDVPDQEQSSSIETPSEEAASPHS
:::::::::::::::::::::::::::::::::::::::::::.:::::
CCDS77 YKQNSQDFMDEIFQELENFSLEQEEEDVPDQEQSSSIETPSEEVASPHS
190 200 210 220
>>CCDS14102.1 RABL2B gene_id:11158|Hs108|chr22 (228 aa)
initn: 1489 init1: 918 opt: 1491 Z-score: 1659.2 bits: 314.3 E(32554): 4.3e-86
Smith-Waterman score: 1491; 99.6% identity (99.6% similar) in 229 aa overlap (1-229:1-228)
10 20 30 40 50 60
pF1KE3 MAEDKTKPSELDQGKYDADDNVKIICLGDSAVGKSKLMERFLMDGFQPQQLSTYALTLYK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MAEDKTKPSELDQGKYDADDNVKIICLGDSAVGKSKLMERFLMDGFQPQQLSTYALTLYK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 HTATVDGRTILVDFWDTAGQERFQSMHASYYHKAHACIMVFDVQRKVTYRNLSTWYTELR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 HTATVDGRTILVDFWDTAGQERFQSMHASYYHKAHACIMVFDVQRKVTYRNLSTWYTELR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 EFRPEIPCIVVANKIDADINVTQKSFNFAKKFSLPLYFVSAADGTNVVKLFNDAIRLAVS
:::::::::::::::: :::::::::::::::::::::::::::::::::::::::::::
CCDS14 EFRPEIPCIVVANKID-DINVTQKSFNFAKKFSLPLYFVSAADGTNVVKLFNDAIRLAVS
130 140 150 160 170
190 200 210 220
pF1KE3 YKQNSQDFMDEIFQELENFSLEQEEEDVPDQEQSSSIETPSEEAASPHS
:::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 YKQNSQDFMDEIFQELENFSLEQEEEDVPDQEQSSSIETPSEEAASPHS
180 190 200 210 220
>>CCDS2118.1 RABL2A gene_id:11159|Hs108|chr2 (228 aa)
initn: 1479 init1: 913 opt: 1481 Z-score: 1648.1 bits: 312.2 E(32554): 1.8e-85
Smith-Waterman score: 1481; 98.3% identity (99.6% similar) in 229 aa overlap (1-229:1-228)
10 20 30 40 50 60
pF1KE3 MAEDKTKPSELDQGKYDADDNVKIICLGDSAVGKSKLMERFLMDGFQPQQLSTYALTLYK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS21 MAEDKTKPSELDQGKYDADDNVKIICLGDSAVGKSKLMERFLMDGFQPQQLSTYALTLYK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 HTATVDGRTILVDFWDTAGQERFQSMHASYYHKAHACIMVFDVQRKVTYRNLSTWYTELR
:::::::.::::::::::::::::::::::::::::::::::.:::::::::::::::::
CCDS21 HTATVDGKTILVDFWDTAGQERFQSMHASYYHKAHACIMVFDIQRKVTYRNLSTWYTELR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 EFRPEIPCIVVANKIDADINVTQKSFNFAKKFSLPLYFVSAADGTNVVKLFNDAIRLAVS
:::::::::::::::: :::::::::::::::::::::::::::::::::::::::::::
CCDS21 EFRPEIPCIVVANKID-DINVTQKSFNFAKKFSLPLYFVSAADGTNVVKLFNDAIRLAVS
130 140 150 160 170
190 200 210 220
pF1KE3 YKQNSQDFMDEIFQELENFSLEQEEEDVPDQEQSSSIETPSEEAASPHS
:::::::::::::::::::::::::::::::::::::::::::.:::::
CCDS21 YKQNSQDFMDEIFQELENFSLEQEEEDVPDQEQSSSIETPSEEVASPHS
180 190 200 210 220
>>CCDS46738.1 RABL2B gene_id:11158|Hs108|chr22 (238 aa)
initn: 1294 init1: 918 opt: 1115 Z-score: 1243.6 bits: 237.4 E(32554): 6e-63
Smith-Waterman score: 1461; 95.4% identity (95.4% similar) in 239 aa overlap (1-229:1-238)
10 20 30 40 50 60
pF1KE3 MAEDKTKPSELDQGKYDADDNVKIICLGDSAVGKSKLMERFLMDGFQPQQLSTYALTLYK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 MAEDKTKPSELDQGKYDADDNVKIICLGDSAVGKSKLMERFLMDGFQPQQLSTYALTLYK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 HTATVDGRTILVDFWDTAGQERFQSMHASYYHKAHACIMVFDVQRKVTYRNLSTWYTELR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 HTATVDGRTILVDFWDTAGQERFQSMHASYYHKAHACIMVFDVQRKVTYRNLSTWYTELR
70 80 90 100 110 120
130 140 150 160 170
pF1KE3 EFRPEIPCIVVANKIDADINVTQKSFNFAKKFSLPLYFVSAADGTNVVK----------L
:::::::::::::::: :::::::::::::::::::::::::::::::: :
CCDS46 EFRPEIPCIVVANKID-DINVTQKSFNFAKKFSLPLYFVSAADGTNVVKVWLTAEVASKL
130 140 150 160 170
180 190 200 210 220
pF1KE3 FNDAIRLAVSYKQNSQDFMDEIFQELENFSLEQEEEDVPDQEQSSSIETPSEEAASPHS
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 FNDAIRLAVSYKQNSQDFMDEIFQELENFSLEQEEEDVPDQEQSSSIETPSEEAASPHS
180 190 200 210 220 230
>>CCDS77455.1 RABL2A gene_id:11159|Hs108|chr2 (238 aa)
initn: 1284 init1: 913 opt: 1110 Z-score: 1238.1 bits: 236.4 E(32554): 1.2e-62
Smith-Waterman score: 1451; 94.1% identity (95.4% similar) in 239 aa overlap (1-229:1-238)
10 20 30 40 50 60
pF1KE3 MAEDKTKPSELDQGKYDADDNVKIICLGDSAVGKSKLMERFLMDGFQPQQLSTYALTLYK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 MAEDKTKPSELDQGKYDADDNVKIICLGDSAVGKSKLMERFLMDGFQPQQLSTYALTLYK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 HTATVDGRTILVDFWDTAGQERFQSMHASYYHKAHACIMVFDVQRKVTYRNLSTWYTELR
:::::::.::::::::::::::::::::::::::::::::::.:::::::::::::::::
CCDS77 HTATVDGKTILVDFWDTAGQERFQSMHASYYHKAHACIMVFDIQRKVTYRNLSTWYTELR
70 80 90 100 110 120
130 140 150 160 170
pF1KE3 EFRPEIPCIVVANKIDADINVTQKSFNFAKKFSLPLYFVSAADGTNVVK----------L
:::::::::::::::: :::::::::::::::::::::::::::::::: :
CCDS77 EFRPEIPCIVVANKID-DINVTQKSFNFAKKFSLPLYFVSAADGTNVVKVWLTAEVASKL
130 140 150 160 170
180 190 200 210 220
pF1KE3 FNDAIRLAVSYKQNSQDFMDEIFQELENFSLEQEEEDVPDQEQSSSIETPSEEAASPHS
:::::::::::::::::::::::::::::::::::::::::::::::::::::.:::::
CCDS77 FNDAIRLAVSYKQNSQDFMDEIFQELENFSLEQEEEDVPDQEQSSSIETPSEEVASPHS
180 190 200 210 220 230
>>CCDS77456.1 RABL2A gene_id:11159|Hs108|chr2 (165 aa)
initn: 1034 init1: 585 opt: 585 Z-score: 660.5 bits: 129.0 E(32554): 1.8e-30
Smith-Waterman score: 910; 71.2% identity (72.1% similar) in 229 aa overlap (1-229:1-165)
10 20 30 40 50 60
pF1KE3 MAEDKTKPSELDQGKYDADDNVKIICLGDSAVGKSKLMERFLMDGFQPQQLSTYALTLYK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 MAEDKTKPSELDQGKYDADDNVKIICLGDSAVGKSKLMERFLMDGFQPQQLSTYALTLYK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 HTATVDGRTILVDFWDTAGQERFQSMHASYYHKAHACIMVFDVQRKVTYRNLSTWYTELR
:::::::.::::
CCDS77 HTATVDGKTILV------------------------------------------------
70
130 140 150 160 170 180
pF1KE3 EFRPEIPCIVVANKIDADINVTQKSFNFAKKFSLPLYFVSAADGTNVVKLFNDAIRLAVS
::::::::::::::::::::::::::::::::::::::::::::
CCDS77 ----------------ADINVTQKSFNFAKKFSLPLYFVSAADGTNVVKLFNDAIRLAVS
80 90 100 110
190 200 210 220
pF1KE3 YKQNSQDFMDEIFQELENFSLEQEEEDVPDQEQSSSIETPSEEAASPHS
:::::::::::::::::::::::::::::::::::::::::::.:::::
CCDS77 YKQNSQDFMDEIFQELENFSLEQEEEDVPDQEQSSSIETPSEEVASPHS
120 130 140 150 160
>>CCDS14156.1 RAB9A gene_id:9367|Hs108|chrX (201 aa)
initn: 350 init1: 258 opt: 348 Z-score: 397.4 bits: 80.6 E(32554): 8.1e-16
Smith-Waterman score: 348; 33.5% identity (69.2% similar) in 182 aa overlap (23-194:9-184)
10 20 30 40 50 60
pF1KE3 MAEDKTKPSELDQGKYDADDNVKIICLGDSAVGKSKLMERFLMDGFQPQQLSTYALTLYK
:.: :::..::::.::.:.. . :. : . : .. . .
CCDS14 MAGKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLN
10 20 30 40
70 80 90 100 110 120
pF1KE3 HTATVDGRTILVDFWDTAGQERFQSMHASYYHKAHACIMVFDVQRKVTYRNLSTWYTELR
. :::. . ...:::::::::.:... .:. . :...:.:. . ...:::.: :.
CCDS14 KDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFI
50 60 70 80 90 100
130 140 150 160 170
pF1KE3 EF----RPE-IPCIVVANKIDADINVTQKSFNFAKKF-----SLPLYFVSAADGTNVVKL
. .:: .: ....::: ::. : : . :. . . : . .:: :.:::.
CCDS14 YYADVKEPESFPFVILGNKI--DISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAA
110 120 130 140 150 160
180 190 200 210 220
pF1KE3 FNDAIRLAVSYKQNSQDFMDEIFQELENFSLEQEEEDVPDQEQSSSIETPSEEAASPHS
:..:.: ... ..: :...:
CCDS14 FEEAVRRVLA----TEDRSDHLIQTDTVNLHRKPKPSSSCC
170 180 190 200
>>CCDS14515.1 RAB9B gene_id:51209|Hs108|chrX (201 aa)
initn: 288 init1: 269 opt: 348 Z-score: 397.4 bits: 80.6 E(32554): 8.1e-16
Smith-Waterman score: 348; 33.5% identity (68.8% similar) in 176 aa overlap (22-189:8-183)
10 20 30 40 50 60
pF1KE3 MAEDKTKPSELDQGKYDADDNVKIICLGDSAVGKSKLMERFLMDGFQPQQLSTYALTLYK
.:.: :::..::::.::.:.. . :. : . : .. . .
CCDS14 MSGKSLLLKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLN
10 20 30 40
70 80 90 100 110 120
pF1KE3 HTATVDGRTILVDFWDTAGQERFQSMHASYYHKAHACIMVFDVQRKVTYRNLSTWYTELR
. :::: . ...:::::::::.:... .:. : :...:.:. . ...::..: :.
CCDS14 RDLEVDGRFVTLQIWDTAGQERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFI
50 60 70 80 90 100
130 140 150 160 170
pF1KE3 EFR----PE-IPCIVVANKIDA-DINVTQKSFNF--AKKFSLPLYFVSAADGTNVVKLFN
. :: .: .:..::.: : .:: . . .. . : .:: : :::. :.
CCDS14 YYADVKDPEHFPFVVLGNKVDKEDRQVTTEEAQTWCMENGDYPYLETSAKDDTNVTVAFE
110 120 130 140 150 160
180 190 200 210 220
pF1KE3 DAIRLAVSYKQNSQDFMDEIFQELENFSLEQEEEDVPDQEQSSSIETPSEEAASPHS
.:.: ... ... . :
CCDS14 EAVRQVLAVEEQLEHCMLGHTIDLNSGSKAGSSCC
170 180 190 200
>>CCDS3052.1 RAB7A gene_id:7879|Hs108|chr3 (207 aa)
initn: 297 init1: 246 opt: 333 Z-score: 380.7 bits: 77.6 E(32554): 7e-15
Smith-Waterman score: 333; 32.4% identity (66.2% similar) in 204 aa overlap (22-215:9-206)
10 20 30 40 50 60
pF1KE3 MAEDKTKPSELDQGKYDADDNVKIICLGDSAVGKSKLMERFLMDGFQPQQLSTYALTLYK
.:.: ::::.:::..::.... :. : .: . .
CCDS30 MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLT
10 20 30 40
70 80 90 100 110
pF1KE3 HTATVDGRTILVDFWDTAGQERFQSMHASYYHKAHACIMVFDVQRKVTYRNLSTWYTEL-
. . :: : . ...:::::::::::. ...:. : :..:::: :...:..: :.
CCDS30 KEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFL
50 60 70 80 90 100
120 130 140 150 160 170
pF1KE3 ---REFRPE-IPCIVVANKIDADI-NVTQK---SFNFAKKFSLPLYFVSAADGTNVVKLF
:: .: .:..:::: . .:. : .. ..:. ..: . .:: .. :: . :
CCDS30 IQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKN-NIPYFETSAKEAINVEQAF
110 120 130 140 150 160
180 190 200 210 220
pF1KE3 NDAIRLAVSYKQNSQDFMDEIFQEL-ENFSLEQEEEDVPDQEQSSSIETPSEEAASPHS
. : :. ::... :...:. : ..:..... . :. :
CCDS30 QTIARNAL--KQETEV---ELYNEFPEPIKLDKNDRAKASAESCSC
170 180 190 200
229 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 17:00:00 2016 done: Mon Nov 7 17:00:01 2016
Total Scan time: 2.090 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]