Result of FASTA (omim) for
pFN21AE3075
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3075, 235 aa
1>>>pF1KE3075 235 - 235 aa - 235 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.6335+/-0.000376; mu= 11.7842+/- 0.023
mean_var=59.9411+/-12.008, 0's: 0 Z-trim(112.9): 52 B-trim: 379 in 1/49
Lambda= 0.165658
statistics sampled from 21943 (21997) to 21943 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.644), E-opt: 0.2 (0.258), width: 16
Scan time: 5.940
The best scores are: opt bits E(85289)
NP_478066 (OMIM: 608617) protein FAM3B isoform a p ( 235) 1580 386.0 3e-107
XP_011527951 (OMIM: 608617) PREDICTED: protein FAM ( 249) 1538 376.0 3.4e-104
XP_011527950 (OMIM: 608617) PREDICTED: protein FAM ( 311) 1530 374.1 1.6e-103
NP_996847 (OMIM: 608617) protein FAM3B isoform b [ ( 187) 1244 305.7 3.6e-83
NP_001269240 (OMIM: 300492) protein FAM3A isoform ( 244) 509 130.0 3.5e-30
XP_005274773 (OMIM: 300492) PREDICTED: protein FAM ( 244) 509 130.0 3.5e-30
NP_001164603 (OMIM: 300492) protein FAM3A isoform ( 230) 507 129.5 4.7e-30
NP_068578 (OMIM: 300492) protein FAM3A isoform 1 p ( 230) 507 129.5 4.7e-30
NP_001269241 (OMIM: 300492) protein FAM3A isoform ( 230) 507 129.5 4.7e-30
NP_001035109 (OMIM: 608618) protein FAM3C precurso ( 227) 501 128.1 1.2e-29
XP_011514038 (OMIM: 608618) PREDICTED: protein FAM ( 227) 501 128.1 1.2e-29
NP_055703 (OMIM: 608618) protein FAM3C precursor [ ( 227) 501 128.1 1.2e-29
XP_011514039 (OMIM: 608618) PREDICTED: protein FAM ( 227) 501 128.1 1.2e-29
NP_001164604 (OMIM: 300492) protein FAM3A isoform ( 192) 497 127.1 2.1e-29
XP_016885190 (OMIM: 300492) PREDICTED: protein FAM ( 189) 489 125.2 7.6e-29
XP_016885191 (OMIM: 300492) PREDICTED: protein FAM ( 189) 489 125.2 7.6e-29
XP_016885189 (OMIM: 300492) PREDICTED: protein FAM ( 189) 489 125.2 7.6e-29
XP_005274771 (OMIM: 300492) PREDICTED: protein FAM ( 251) 485 124.3 1.9e-28
XP_006724894 (OMIM: 300492) PREDICTED: protein FAM ( 252) 484 124.1 2.3e-28
XP_006724895 (OMIM: 300492) PREDICTED: protein FAM ( 238) 482 123.6 3e-28
XP_011531651 (OMIM: 608619) PREDICTED: protein FAM ( 230) 473 121.4 1.3e-27
XP_011531650 (OMIM: 608619) PREDICTED: protein FAM ( 230) 473 121.4 1.3e-27
XP_011531652 (OMIM: 608619) PREDICTED: protein FAM ( 229) 472 121.2 1.5e-27
XP_016885188 (OMIM: 300492) PREDICTED: protein FAM ( 197) 464 119.2 5e-27
XP_006724897 (OMIM: 300492) PREDICTED: protein FAM ( 197) 464 119.2 5e-27
XP_011529487 (OMIM: 300492) PREDICTED: protein FAM ( 197) 464 119.2 5e-27
XP_011531653 (OMIM: 608619) PREDICTED: protein FAM ( 224) 464 119.3 5.6e-27
XP_005264919 (OMIM: 608619) PREDICTED: protein FAM ( 224) 464 119.3 5.6e-27
NP_620160 (OMIM: 608619) protein FAM3D precursor [ ( 224) 464 119.3 5.6e-27
XP_006713028 (OMIM: 608619) PREDICTED: protein FAM ( 224) 464 119.3 5.6e-27
XP_005264921 (OMIM: 608619) PREDICTED: protein FAM ( 223) 463 119.0 6.6e-27
XP_005264920 (OMIM: 608619) PREDICTED: protein FAM ( 223) 463 119.0 6.6e-27
XP_011531656 (OMIM: 608619) PREDICTED: protein FAM ( 187) 452 116.4 3.5e-26
XP_006713030 (OMIM: 608619) PREDICTED: protein FAM ( 187) 452 116.4 3.5e-26
XP_011531655 (OMIM: 608619) PREDICTED: protein FAM ( 188) 452 116.4 3.5e-26
XP_011531654 (OMIM: 608619) PREDICTED: protein FAM ( 188) 452 116.4 3.5e-26
XP_006724896 (OMIM: 300492) PREDICTED: protein FAM ( 227) 208 58.1 1.5e-08
XP_011540062 (OMIM: 253280,606822,613151,613157,61 ( 638) 213 59.4 1.7e-08
NP_001277058 (OMIM: 253280,606822,613151,613157,61 ( 638) 213 59.4 1.7e-08
XP_016857179 (OMIM: 253280,606822,613151,613157,61 ( 660) 213 59.4 1.8e-08
NP_060209 (OMIM: 253280,606822,613151,613157,61712 ( 660) 213 59.4 1.8e-08
XP_006710818 (OMIM: 253280,606822,613151,613157,61 ( 718) 213 59.4 1.9e-08
XP_005271067 (OMIM: 253280,606822,613151,613157,61 ( 718) 213 59.4 1.9e-08
XP_005277936 (OMIM: 300492) PREDICTED: protein FAM ( 213) 206 57.6 2e-08
NP_001164605 (OMIM: 300492) protein FAM3A isoform ( 213) 206 57.6 2e-08
NP_001230695 (OMIM: 253280,606822,613151,613157,61 ( 748) 213 59.4 2e-08
XP_006710819 (OMIM: 253280,606822,613151,613157,61 ( 748) 213 59.4 2e-08
NP_001277059 (OMIM: 253280,606822,613151,613157,61 ( 517) 157 46.0 0.00015
NP_061159 (OMIM: 608366) cell migration-inducing a (1361) 161 47.0 0.00019
NP_001280227 (OMIM: 608366) cell migration-inducin (1361) 161 47.0 0.00019
>>NP_478066 (OMIM: 608617) protein FAM3B isoform a precu (235 aa)
initn: 1580 init1: 1580 opt: 1580 Z-score: 2046.4 bits: 386.0 E(85289): 3e-107
Smith-Waterman score: 1580; 100.0% identity (100.0% similar) in 235 aa overlap (1-235:1-235)
10 20 30 40 50 60
pF1KE3 MRPLAGGLLKVVFVVFASLCAWYSGYLLAELIPDAPLSSAAYSIRSIGERPVLKAPVPKR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_478 MRPLAGGLLKVVFVVFASLCAWYSGYLLAELIPDAPLSSAAYSIRSIGERPVLKAPVPKR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 QKCDHWTPCPSDTYAYRLLSGGGRSKYAKICFEDNLLMGEQLGNVARGINIAIVNYVTGN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_478 QKCDHWTPCPSDTYAYRLLSGGGRSKYAKICFEDNLLMGEQLGNVARGINIAIVNYVTGN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 VTATRCFDMYEGDNSGPMTKFIQSAAPKSLLFMVTYDDGSTRLNNDAKNAIEALGSKEIR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_478 VTATRCFDMYEGDNSGPMTKFIQSAAPKSLLFMVTYDDGSTRLNNDAKNAIEALGSKEIR
130 140 150 160 170 180
190 200 210 220 230
pF1KE3 NMKFRSSWVFIAAKGLELPSEIQREKINHSDAKNNRYSGWPAEIQIEGCIPKERS
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_478 NMKFRSSWVFIAAKGLELPSEIQREKINHSDAKNNRYSGWPAEIQIEGCIPKERS
190 200 210 220 230
>>XP_011527951 (OMIM: 608617) PREDICTED: protein FAM3B i (249 aa)
initn: 1538 init1: 1538 opt: 1538 Z-score: 1991.7 bits: 376.0 E(85289): 3.4e-104
Smith-Waterman score: 1538; 100.0% identity (100.0% similar) in 229 aa overlap (7-235:21-249)
10 20 30 40
pF1KE3 MRPLAGGLLKVVFVVFASLCAWYSGYLLAELIPDAPLSSAAYSIRS
::::::::::::::::::::::::::::::::::::::::
XP_011 MAGAPWRHLFPPCEGRSPRLGLLKVVFVVFASLCAWYSGYLLAELIPDAPLSSAAYSIRS
10 20 30 40 50 60
50 60 70 80 90 100
pF1KE3 IGERPVLKAPVPKRQKCDHWTPCPSDTYAYRLLSGGGRSKYAKICFEDNLLMGEQLGNVA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IGERPVLKAPVPKRQKCDHWTPCPSDTYAYRLLSGGGRSKYAKICFEDNLLMGEQLGNVA
70 80 90 100 110 120
110 120 130 140 150 160
pF1KE3 RGINIAIVNYVTGNVTATRCFDMYEGDNSGPMTKFIQSAAPKSLLFMVTYDDGSTRLNND
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RGINIAIVNYVTGNVTATRCFDMYEGDNSGPMTKFIQSAAPKSLLFMVTYDDGSTRLNND
130 140 150 160 170 180
170 180 190 200 210 220
pF1KE3 AKNAIEALGSKEIRNMKFRSSWVFIAAKGLELPSEIQREKINHSDAKNNRYSGWPAEIQI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AKNAIEALGSKEIRNMKFRSSWVFIAAKGLELPSEIQREKINHSDAKNNRYSGWPAEIQI
190 200 210 220 230 240
230
pF1KE3 EGCIPKERS
:::::::::
XP_011 EGCIPKERS
>>XP_011527950 (OMIM: 608617) PREDICTED: protein FAM3B i (311 aa)
initn: 1530 init1: 1530 opt: 1530 Z-score: 1979.8 bits: 374.1 E(85289): 1.6e-103
Smith-Waterman score: 1530; 100.0% identity (100.0% similar) in 228 aa overlap (8-235:84-311)
10 20 30
pF1KE3 MRPLAGGLLKVVFVVFASLCAWYSGYLLAELIPDAPL
::::::::::::::::::::::::::::::
XP_011 LSSLPGSPEKCPGRELPAASGPAMGYPSSCLLKVVFVVFASLCAWYSGYLLAELIPDAPL
60 70 80 90 100 110
40 50 60 70 80 90
pF1KE3 SSAAYSIRSIGERPVLKAPVPKRQKCDHWTPCPSDTYAYRLLSGGGRSKYAKICFEDNLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SSAAYSIRSIGERPVLKAPVPKRQKCDHWTPCPSDTYAYRLLSGGGRSKYAKICFEDNLL
120 130 140 150 160 170
100 110 120 130 140 150
pF1KE3 MGEQLGNVARGINIAIVNYVTGNVTATRCFDMYEGDNSGPMTKFIQSAAPKSLLFMVTYD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MGEQLGNVARGINIAIVNYVTGNVTATRCFDMYEGDNSGPMTKFIQSAAPKSLLFMVTYD
180 190 200 210 220 230
160 170 180 190 200 210
pF1KE3 DGSTRLNNDAKNAIEALGSKEIRNMKFRSSWVFIAAKGLELPSEIQREKINHSDAKNNRY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DGSTRLNNDAKNAIEALGSKEIRNMKFRSSWVFIAAKGLELPSEIQREKINHSDAKNNRY
240 250 260 270 280 290
220 230
pF1KE3 SGWPAEIQIEGCIPKERS
::::::::::::::::::
XP_011 SGWPAEIQIEGCIPKERS
300 310
>>NP_996847 (OMIM: 608617) protein FAM3B isoform b [Homo (187 aa)
initn: 1244 init1: 1244 opt: 1244 Z-score: 1614.1 bits: 305.7 E(85289): 3.6e-83
Smith-Waterman score: 1244; 98.4% identity (98.9% similar) in 186 aa overlap (50-235:2-187)
20 30 40 50 60 70
pF1KE3 CAWYSGYLLAELIPDAPLSSAAYSIRSIGERPVLKAPVPKRQKCDHWTPCPSDTYAYRLL
::. :::::::::::::::::::::::::
NP_996 MRPLAGAPVPKRQKCDHWTPCPSDTYAYRLL
10 20 30
80 90 100 110 120 130
pF1KE3 SGGGRSKYAKICFEDNLLMGEQLGNVARGINIAIVNYVTGNVTATRCFDMYEGDNSGPMT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_996 SGGGRSKYAKICFEDNLLMGEQLGNVARGINIAIVNYVTGNVTATRCFDMYEGDNSGPMT
40 50 60 70 80 90
140 150 160 170 180 190
pF1KE3 KFIQSAAPKSLLFMVTYDDGSTRLNNDAKNAIEALGSKEIRNMKFRSSWVFIAAKGLELP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_996 KFIQSAAPKSLLFMVTYDDGSTRLNNDAKNAIEALGSKEIRNMKFRSSWVFIAAKGLELP
100 110 120 130 140 150
200 210 220 230
pF1KE3 SEIQREKINHSDAKNNRYSGWPAEIQIEGCIPKERS
::::::::::::::::::::::::::::::::::::
NP_996 SEIQREKINHSDAKNNRYSGWPAEIQIEGCIPKERS
160 170 180
>>NP_001269240 (OMIM: 300492) protein FAM3A isoform 4 [H (244 aa)
initn: 492 init1: 248 opt: 509 Z-score: 662.8 bits: 130.0 E(85289): 3.5e-30
Smith-Waterman score: 509; 37.1% identity (68.6% similar) in 210 aa overlap (26-235:38-242)
10 20 30 40 50
pF1KE3 MRPLAGGLLKVVFVVFASLCAWYSGYLLAELIPDAPLSSAAYSIRSIGERPVLKA
:::. .:: : .: . . : : :
NP_001 PGWAWQWLSSHPATLHQLECSGAISVHCNLYLLGSSDSSAPASRVAET--TGPESSVTAA
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE3 PVPKRQKCDHWTPCPSDTYAYRLLSGGGRSKYAKICFEDNLLMGEQLGNVARGINIAIVN
: .. :: ::: . :.:..::.. :::.::..::. ::.::.:::.::
NP_001 PRARKYKCGLPQPCPEEHLAFRVVSGAANVIGPKICLEDKMLMSSVKDNVGRGLNIALVN
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE3 YVTGNVTATRCFDMYEGDNSGPMTKFIQSAAPKSLLFMVTYDDGSTRLNNDAKNAIEALG
:.:.. .: :::. :: . . :::. .:.:...::: .:..:..... . ::
NP_001 GVSGELIEARAFDMWAGDVND-LLKFIRPLHEGTLVFVASYDDPATKMNEETRKLFSELG
130 140 150 160 170 180
180 190 200 210 220 230
pF1KE3 SKEIRNMKFRSSWVFIAAKGLELPSEIQREKINHSDAKNNRYSGWPAEIQIEGCIPKERS
:.. ... ::.::::..:::.. : .... : . ..:.: ::: ...:::::.. .
NP_001 SRNAKELAFRDSWVFVGAKGVQNKSPFEQHVKN--SKHSNKYEGWPEALEMEGCIPRRST
190 200 210 220 230 240
NP_001 AS
>>XP_005274773 (OMIM: 300492) PREDICTED: protein FAM3A i (244 aa)
initn: 492 init1: 248 opt: 509 Z-score: 662.8 bits: 130.0 E(85289): 3.5e-30
Smith-Waterman score: 509; 37.1% identity (68.6% similar) in 210 aa overlap (26-235:38-242)
10 20 30 40 50
pF1KE3 MRPLAGGLLKVVFVVFASLCAWYSGYLLAELIPDAPLSSAAYSIRSIGERPVLKA
:::. .:: : .: . . : : :
XP_005 PGWAWQWLSSHPATLHQLECSGAISVHCNLYLLGSSDSSAPASRVAET--TGPESSVTAA
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE3 PVPKRQKCDHWTPCPSDTYAYRLLSGGGRSKYAKICFEDNLLMGEQLGNVARGINIAIVN
: .. :: ::: . :.:..::.. :::.::..::. ::.::.:::.::
XP_005 PRARKYKCGLPQPCPEEHLAFRVVSGAANVIGPKICLEDKMLMSSVKDNVGRGLNIALVN
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE3 YVTGNVTATRCFDMYEGDNSGPMTKFIQSAAPKSLLFMVTYDDGSTRLNNDAKNAIEALG
:.:.. .: :::. :: . . :::. .:.:...::: .:..:..... . ::
XP_005 GVSGELIEARAFDMWAGDVND-LLKFIRPLHEGTLVFVASYDDPATKMNEETRKLFSELG
130 140 150 160 170 180
180 190 200 210 220 230
pF1KE3 SKEIRNMKFRSSWVFIAAKGLELPSEIQREKINHSDAKNNRYSGWPAEIQIEGCIPKERS
:.. ... ::.::::..:::.. : .... : . ..:.: ::: ...:::::.. .
XP_005 SRNAKELAFRDSWVFVGAKGVQNKSPFEQHVKN--SKHSNKYEGWPEALEMEGCIPRRST
190 200 210 220 230 240
XP_005 AS
>>NP_001164603 (OMIM: 300492) protein FAM3A isoform 1 pr (230 aa)
initn: 497 init1: 248 opt: 507 Z-score: 660.6 bits: 129.5 E(85289): 4.7e-30
Smith-Waterman score: 507; 35.4% identity (68.4% similar) in 237 aa overlap (1-235:1-228)
10 20 30 40 50
pF1KE3 MRPLAGGLLKVVFVVFASLCAWYSGYLLAELIPDAPLSS--AAYSIRSIGERPVLKAPVP
:: ::: : ::.:: ... .: ... .. .: :. .. . : : ::
NP_001 MR-LAGPLRIVVLVVSVGV-TW----IVVSILLGGPGSGFPRIQQLFTSPESSVTAAPRA
10 20 30 40 50
60 70 80 90 100 110
pF1KE3 KRQKCDHWTPCPSDTYAYRLLSGGGRSKYAKICFEDNLLMGEQLGNVARGINIAIVNYVT
.. :: ::: . :.:..::.. :::.::..::. ::.::.:::.:: :.
NP_001 RKYKCGLPQPCPEEHLAFRVVSGAANVIGPKICLEDKMLMSSVKDNVGRGLNIALVNGVS
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE3 GNVTATRCFDMYEGDNSGPMTKFIQSAAPKSLLFMVTYDDGSTRLNNDAKNAIEALGSKE
:.. .: :::. :: . . :::. .:.:...::: .:..:..... . :::..
NP_001 GELIEARAFDMWAGD-VNDLLKFIRPLHEGTLVFVASYDDPATKMNEETRKLFSELGSRN
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE3 IRNMKFRSSWVFIAAKGLELPSEIQREKINHSDAKNNRYSGWPAEIQIEGCIPKERS
... ::.::::..:::.. : .. .....: ..:.: ::: ...:::::.. .
NP_001 AKELAFRDSWVFVGAKGVQNKSPFE-QHVKNSK-HSNKYEGWPEALEMEGCIPRRSTAS
180 190 200 210 220 230
>>NP_068578 (OMIM: 300492) protein FAM3A isoform 1 precu (230 aa)
initn: 497 init1: 248 opt: 507 Z-score: 660.6 bits: 129.5 E(85289): 4.7e-30
Smith-Waterman score: 507; 35.4% identity (68.4% similar) in 237 aa overlap (1-235:1-228)
10 20 30 40 50
pF1KE3 MRPLAGGLLKVVFVVFASLCAWYSGYLLAELIPDAPLSS--AAYSIRSIGERPVLKAPVP
:: ::: : ::.:: ... .: ... .. .: :. .. . : : ::
NP_068 MR-LAGPLRIVVLVVSVGV-TW----IVVSILLGGPGSGFPRIQQLFTSPESSVTAAPRA
10 20 30 40 50
60 70 80 90 100 110
pF1KE3 KRQKCDHWTPCPSDTYAYRLLSGGGRSKYAKICFEDNLLMGEQLGNVARGINIAIVNYVT
.. :: ::: . :.:..::.. :::.::..::. ::.::.:::.:: :.
NP_068 RKYKCGLPQPCPEEHLAFRVVSGAANVIGPKICLEDKMLMSSVKDNVGRGLNIALVNGVS
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE3 GNVTATRCFDMYEGDNSGPMTKFIQSAAPKSLLFMVTYDDGSTRLNNDAKNAIEALGSKE
:.. .: :::. :: . . :::. .:.:...::: .:..:..... . :::..
NP_068 GELIEARAFDMWAGD-VNDLLKFIRPLHEGTLVFVASYDDPATKMNEETRKLFSELGSRN
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE3 IRNMKFRSSWVFIAAKGLELPSEIQREKINHSDAKNNRYSGWPAEIQIEGCIPKERS
... ::.::::..:::.. : .. .....: ..:.: ::: ...:::::.. .
NP_068 AKELAFRDSWVFVGAKGVQNKSPFE-QHVKNSK-HSNKYEGWPEALEMEGCIPRRSTAS
180 190 200 210 220 230
>>NP_001269241 (OMIM: 300492) protein FAM3A isoform 1 pr (230 aa)
initn: 497 init1: 248 opt: 507 Z-score: 660.6 bits: 129.5 E(85289): 4.7e-30
Smith-Waterman score: 507; 35.4% identity (68.4% similar) in 237 aa overlap (1-235:1-228)
10 20 30 40 50
pF1KE3 MRPLAGGLLKVVFVVFASLCAWYSGYLLAELIPDAPLSS--AAYSIRSIGERPVLKAPVP
:: ::: : ::.:: ... .: ... .. .: :. .. . : : ::
NP_001 MR-LAGPLRIVVLVVSVGV-TW----IVVSILLGGPGSGFPRIQQLFTSPESSVTAAPRA
10 20 30 40 50
60 70 80 90 100 110
pF1KE3 KRQKCDHWTPCPSDTYAYRLLSGGGRSKYAKICFEDNLLMGEQLGNVARGINIAIVNYVT
.. :: ::: . :.:..::.. :::.::..::. ::.::.:::.:: :.
NP_001 RKYKCGLPQPCPEEHLAFRVVSGAANVIGPKICLEDKMLMSSVKDNVGRGLNIALVNGVS
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE3 GNVTATRCFDMYEGDNSGPMTKFIQSAAPKSLLFMVTYDDGSTRLNNDAKNAIEALGSKE
:.. .: :::. :: . . :::. .:.:...::: .:..:..... . :::..
NP_001 GELIEARAFDMWAGD-VNDLLKFIRPLHEGTLVFVASYDDPATKMNEETRKLFSELGSRN
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE3 IRNMKFRSSWVFIAAKGLELPSEIQREKINHSDAKNNRYSGWPAEIQIEGCIPKERS
... ::.::::..:::.. : .. .....: ..:.: ::: ...:::::.. .
NP_001 AKELAFRDSWVFVGAKGVQNKSPFE-QHVKNSK-HSNKYEGWPEALEMEGCIPRRSTAS
180 190 200 210 220 230
>>NP_001035109 (OMIM: 608618) protein FAM3C precursor [H (227 aa)
initn: 437 init1: 221 opt: 501 Z-score: 653.0 bits: 128.1 E(85289): 1.2e-29
Smith-Waterman score: 501; 36.8% identity (65.8% similar) in 228 aa overlap (7-234:5-226)
10 20 30 40 50 60
pF1KE3 MRPLAGGLLKVVFVVFASLCAWYSGYLLAELIPDAPLSSAAYSIRSIGERPVLKAPVPKR
: :.: .: . : ..: . :. :: :.. :: . . .. : :
NP_001 MRVAGAAKLVVAVAVFLLTFYVISQVFEIKMDASLGN--LFARSALDTAA-RSTKPPR
10 20 30 40 50
70 80 90 100 110 120
pF1KE3 QKCDHWTPCPSDTYAYRLLSGGGRSKYAKICFEDNLLMGEQLGNVARGINIAIVNYVTGN
:: :: .:... ::.. :::.:::.::. .::.::::.:..: ::.
NP_001 YKCGISKACPEKHFAFKMASGAANVVGPKICLEDNVLMSGVKNNVGRGINVALANGKTGE
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE3 VTATRCFDMYEGDNSGPMTKFIQSAAPKSLLFMVTYDDGSTRLNNDAKNAIEALGSKEIR
: :. :::. :: .:. .:... ....: :::::.:.::..:. : ::: :
NP_001 VLDTKYFDMWGGD-VAPFIEFLKAIQDGTIVLMGTYDDGATKLNDEARRLIADLGSTSIT
120 130 140 150 160 170
190 200 210 220 230
pF1KE3 NMKFRSSWVFIAAKGLELPSEIQREKINHSDAKNNRYSGWPAEIQIEGCIPKERS
:. ::..::: ..::.. : .... :..:. :.: ::: ...:::::...
NP_001 NLGFRDNWVFCGGKGIKTKSPFEQHIKNNKDT--NKYEGWPEVVEMEGCIPQKQD
180 190 200 210 220
235 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 04:26:33 2016 done: Sun Nov 6 04:26:34 2016
Total Scan time: 5.940 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]