FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE9606, 233 aa
  1>>>pF1KE9606 233 - 233 aa - 233 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4894+/-0.000719; mu= 14.1963+/- 0.043
 mean_var=79.1249+/-15.547, 0's: 0 Z-trim(110.1): 17  B-trim: 43 in 1/51
 Lambda= 0.144184
 statistics sampled from 11385 (11392) to 11385 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.719), E-opt: 0.2 (0.35), width:  16
 Scan time:  2.370

The best scores are:                                      opt bits E(32554)
CCDS13611.1 MIS18A gene_id:54069|Hs108|chr21       ( 233) 1570 335.5 1.8e-92


>>CCDS13611.1 MIS18A gene_id:54069|Hs108|chr21            (233 aa)
 initn: 1570 init1: 1570 opt: 1570  Z-score: 1773.6  bits: 335.5 E(32554): 1.8e-92
Smith-Waterman score: 1570; 100.0% identity (100.0% similar) in 233 aa overlap (1-233:1-233)

               10        20        30        40        50        60
pF1KE9 MAGVRSLRCSRGCAGGCECGDKGKCSDSSLLGKRLSEDSSRHQLLQKWASMWSSMSEDAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MAGVRSLRCSRGCAGGCECGDKGKCSDSSLLGKRLSEDSSRHQLLQKWASMWSSMSEDAS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE9 VADMERAQLEEEAAAAEERPLVFLCSGCRRPLGDSLSWVASQEDTNCILLRCVSCNVSVD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 VADMERAQLEEEAAAAEERPLVFLCSGCRRPLGDSLSWVASQEDTNCILLRCVSCNVSVD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE9 KEQKLSKREKENGCVLETLCCAGCSLNLGYVYRCTPKNLDYKRDLFCLSVEAIESYVLGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 KEQKLSKREKENGCVLETLCCAGCSLNLGYVYRCTPKNLDYKRDLFCLSVEAIESYVLGS
              130       140       150       160       170       180

              190       200       210       220       230   
pF1KE9 SEKQIVSEDKELFNLESRVEIEKSLTQMEDVLKALQMKLWEAESKLSFATCKS
       :::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 SEKQIVSEDKELFNLESRVEIEKSLTQMEDVLKALQMKLWEAESKLSFATCKS
              190       200       210       220       230   




233 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 06:28:16 2016 done: Sun Nov  6 06:28:16 2016
 Total Scan time:  2.370 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]