FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6177, 108 aa
  1>>>pF1KE6177 108 - 108 aa - 108 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4155+/-0.000697; mu= 9.1865+/- 0.042
 mean_var=59.9592+/-11.930, 0's: 0 Z-trim(109.0): 14  B-trim: 0 in 0/51
 Lambda= 0.165633
 statistics sampled from 10570 (10577) to 10570 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.726), E-opt: 0.2 (0.325), width:  16
 Scan time:  1.280

The best scores are:                                      opt bits E(32554)
CCDS13574.1 ATP5J gene_id:522|Hs108|chr21          ( 108)  696 174.0 1.6e-44
CCDS46637.1 ATP5J gene_id:522|Hs108|chr21          ( 116)  696 174.0 1.7e-44


>>CCDS13574.1 ATP5J gene_id:522|Hs108|chr21               (108 aa)
 initn: 696 init1: 696 opt: 696  Z-score: 913.0  bits: 174.0 E(32554): 1.6e-44
Smith-Waterman score: 696; 100.0% identity (100.0% similar) in 108 aa overlap (1-108:1-108)

               10        20        30        40        50        60
pF1KE6 MILQRLFRFSSVIRSAVSVHLRRNIGVTAVAFNKELDPIQKLFVDKIREYKSKRQTSGGP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MILQRLFRFSSVIRSAVSVHLRRNIGVTAVAFNKELDPIQKLFVDKIREYKSKRQTSGGP
               10        20        30        40        50        60

               70        80        90       100        
pF1KE6 VDASSEYQQELERELFKLKQMFGNADMNTFPTFKFEDPKFEVIEKPQA
       ::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 VDASSEYQQELERELFKLKQMFGNADMNTFPTFKFEDPKFEVIEKPQA
               70        80        90       100        

>>CCDS46637.1 ATP5J gene_id:522|Hs108|chr21               (116 aa)
 initn: 696 init1: 696 opt: 696  Z-score: 912.5  bits: 174.0 E(32554): 1.7e-44
Smith-Waterman score: 696; 100.0% identity (100.0% similar) in 108 aa overlap (1-108:9-116)

                       10        20        30        40        50  
pF1KE6         MILQRLFRFSSVIRSAVSVHLRRNIGVTAVAFNKELDPIQKLFVDKIREYKS
               ::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 MHCDGGISMILQRLFRFSSVIRSAVSVHLRRNIGVTAVAFNKELDPIQKLFVDKIREYKS
               10        20        30        40        50        60

             60        70        80        90       100        
pF1KE6 KRQTSGGPVDASSEYQQELERELFKLKQMFGNADMNTFPTFKFEDPKFEVIEKPQA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 KRQTSGGPVDASSEYQQELERELFKLKQMFGNADMNTFPTFKFEDPKFEVIEKPQA
               70        80        90       100       110      




108 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 10:06:42 2016 done: Tue Nov  8 10:06:43 2016
 Total Scan time:  1.280 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]