FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3755, 361 aa 1>>>pF1KE3755 361 - 361 aa - 361 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.5651+/-0.000674; mu= 16.5207+/- 0.041 mean_var=79.6585+/-15.562, 0's: 0 Z-trim(111.2): 14 B-trim: 0 in 0/53 Lambda= 0.143700 statistics sampled from 12153 (12164) to 12153 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.729), E-opt: 0.2 (0.374), width: 16 Scan time: 3.000 The best scores are: opt bits E(32554) CCDS13559.1 PCMTD2 gene_id:55251|Hs108|chr20 ( 361) 2405 507.6 6.6e-144 CCDS6148.1 PCMTD1 gene_id:115294|Hs108|chr8 ( 357) 1631 347.2 1.3e-95 CCDS46631.1 PCMTD2 gene_id:55251|Hs108|chr20 ( 334) 1306 279.8 2.4e-75 CCDS69480.1 PCMTD1 gene_id:115294|Hs108|chr8 ( 281) 815 177.9 9.1e-45 >>CCDS13559.1 PCMTD2 gene_id:55251|Hs108|chr20 (361 aa) initn: 2405 init1: 2405 opt: 2405 Z-score: 2697.1 bits: 507.6 E(32554): 6.6e-144 Smith-Waterman score: 2405; 100.0% identity (100.0% similar) in 361 aa overlap (1-361:1-361) 10 20 30 40 50 60 pF1KE3 MGGAVSAGEDNDELIDNLKEAQYIRTELVEQAFRAIDRADYYLEEFKENAYKDLAWKHGN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 MGGAVSAGEDNDELIDNLKEAQYIRTELVEQAFRAIDRADYYLEEFKENAYKDLAWKHGN 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 IHLSAPCIYSEVMEALDLQPGLSFLNLGSGTGYLSSMVGLILGPFGVNHGVELHSDVIEY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 IHLSAPCIYSEVMEALDLQPGLSFLNLGSGTGYLSSMVGLILGPFGVNHGVELHSDVIEY 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 AKQKLDFFIRTSDSFDKFDFCEPSFVTGNCLEISPDCSQYDRVYCGAGVQKEHEEYMKNL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 AKQKLDFFIRTSDSFDKFDFCEPSFVTGNCLEISPDCSQYDRVYCGAGVQKEHEEYMKNL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 LKVGGILVMPLEEKLTKITRTGPSAWETKKILAVSFAPLIQPCHSESGKSRLVQLPPVAV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 LKVGGILVMPLEEKLTKITRTGPSAWETKKILAVSFAPLIQPCHSESGKSRLVQLPPVAV 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE3 RSLQDLARIAIRGTIKKIIHQETVSKNGNGLKNTPRFKRRRVRRRRMETIVFLDKEVFAS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 RSLQDLARIAIRGTIKKIIHQETVSKNGNGLKNTPRFKRRRVRRRRMETIVFLDKEVFAS 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE3 RISNPSDDNSCEDLEEERREEEEKTPPETKPDPPVNFLRQKVLSLPLPDPLKYYLLYYRE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 RISNPSDDNSCEDLEEERREEEEKTPPETKPDPPVNFLRQKVLSLPLPDPLKYYLLYYRE 310 320 330 340 350 360 pF1KE3 K : CCDS13 K >>CCDS6148.1 PCMTD1 gene_id:115294|Hs108|chr8 (357 aa) initn: 1632 init1: 1408 opt: 1631 Z-score: 1829.9 bits: 347.2 E(32554): 1.3e-95 Smith-Waterman score: 1631; 67.5% identity (86.5% similar) in 363 aa overlap (1-361:1-357) 10 20 30 40 50 60 pF1KE3 MGGAVSAGEDNDELIDNLKEAQYIRTELVEQAFRAIDRADYYLEEFKENAYKDLAWKHGN ::::::::::::.:::::::::::::: ::::::::::.::::: ...:::::::::::: CCDS61 MGGAVSAGEDNDDLIDNLKEAQYIRTERVEQAFRAIDRGDYYLEGYRDNAYKDLAWKHGN 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 IHLSAPCIYSEVMEALDLQPGLSFLNLGSGTGYLSSMVGLILGPFGVNHGVELHSDVIEY :::::::::::::::: ::::::::::::::::::.::::::::::.:::.::::::.:: CCDS61 IHLSAPCIYSEVMEALKLQPGLSFLNLGSGTGYLSTMVGLILGPFGINHGIELHSDVVEY 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 AKQKLDFFIRTSDSFDKFDFCEPSFVTGNCLEISPDCSQYDRVYCGAGVQKEHEEYMKNL ::.::. ::..:::::::.::::.::.::::.:. : ::::.::::::::.::.::: : CCDS61 AKEKLESFIKNSDSFDKFEFCEPAFVVGNCLQIASDSHQYDRIYCGAGVQKDHENYMKIL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 LKVGGILVMPLEEKLTKITRTGPSAWETKKILAVSFAPLIQPCHSESGKSRLVQLPPVAV ::::::::::.:..::.: ::: ..::.:.:::::::::.:: ....:: : ::: :: CCDS61 LKVGGILVMPIEDQLTQIMRTGQNTWESKNILAVSFAPLVQPSKNDNGKPDSVGLPPCAV 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE3 RSLQDLARIAIRGTIKKIIHQETVSKNGNGLKNTPRFKRRRVRRRRMETIVFLDKEVFAS :.::::::: :: :....:..: .: : . :. ::.::..: ..: ::. ... CCDS61 RNLQDLARIYIRRTLRNFINDEMQAK-GIPQRAPPKRKRKRVKQR-INTYVFVGNQL--- 250 260 270 280 290 310 320 330 340 350 pF1KE3 RISNPSDDNSCEDLEEERREEEEKTPPET-KPD-PPVNFLRQKVLSLPLPDPLKYYLLYY : .: :.. : .::. .::::: :. ::. :: :.::.:...::::. :: :: :. CCDS61 -IPQPLDSEEDEKMEEDNKEEEEKDHNEAMKPEEPPQNLLREKIMKLPLPESLKAYLTYF 300 310 320 330 340 350 360 pF1KE3 REK :.: CCDS61 RDK >>CCDS46631.1 PCMTD2 gene_id:55251|Hs108|chr20 (334 aa) initn: 1388 init1: 1306 opt: 1306 Z-score: 1466.2 bits: 279.8 E(32554): 2.4e-75 Smith-Waterman score: 2172; 92.5% identity (92.5% similar) in 361 aa overlap (1-361:1-334) 10 20 30 40 50 60 pF1KE3 MGGAVSAGEDNDELIDNLKEAQYIRTELVEQAFRAIDRADYYLEEFKENAYKDLAWKHGN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 MGGAVSAGEDNDELIDNLKEAQYIRTELVEQAFRAIDRADYYLEEFKENAYKDLAWKHGN 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 IHLSAPCIYSEVMEALDLQPGLSFLNLGSGTGYLSSMVGLILGPFGVNHGVELHSDVIEY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 IHLSAPCIYSEVMEALDLQPGLSFLNLGSGTGYLSSMVGLILGPFGVNHGVELHSDVIEY 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 AKQKLDFFIRTSDSFDKFDFCEPSFVTGNCLEISPDCSQYDRVYCGAGVQKEHEEYMKNL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 AKQKLDFFIRTSDSFDKFDFCEPSFVTGNCLEISPDCSQYDRVYCGAGVQKEHEEYMKNL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 LKVGGILVMPLEEKLTKITRTGPSAWETKKILAVSFAPLIQPCHSESGKSRLVQLPPVAV :::::::::::::: ::::::::::::::::::: CCDS46 LKVGGILVMPLEEK---------------------------PCHSESGKSRLVQLPPVAV 190 200 210 250 260 270 280 290 300 pF1KE3 RSLQDLARIAIRGTIKKIIHQETVSKNGNGLKNTPRFKRRRVRRRRMETIVFLDKEVFAS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 RSLQDLARIAIRGTIKKIIHQETVSKNGNGLKNTPRFKRRRVRRRRMETIVFLDKEVFAS 220 230 240 250 260 270 310 320 330 340 350 360 pF1KE3 RISNPSDDNSCEDLEEERREEEEKTPPETKPDPPVNFLRQKVLSLPLPDPLKYYLLYYRE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 RISNPSDDNSCEDLEEERREEEEKTPPETKPDPPVNFLRQKVLSLPLPDPLKYYLLYYRE 280 290 300 310 320 330 pF1KE3 K : CCDS46 K >>CCDS69480.1 PCMTD1 gene_id:115294|Hs108|chr8 (281 aa) initn: 816 init1: 592 opt: 815 Z-score: 917.2 bits: 177.9 E(32554): 9.1e-45 Smith-Waterman score: 815; 55.1% identity (80.2% similar) in 227 aa overlap (137-361:61-281) 110 120 130 140 150 160 pF1KE3 VNHGVELHSDVIEYAKQKLDFFIRTSDSFDKFDFCEPSFVTGNCLEISPDCSQYDRVYCG .:.::::.::.::::.:. : ::::.::: CCDS69 PCCYCGGSGVWLLRTPPSPSAWPARRCPRHRFEFCEPAFVVGNCLQIASDSHQYDRIYCG 40 50 60 70 80 90 170 180 190 200 210 220 pF1KE3 AGVQKEHEEYMKNLLKVGGILVMPLEEKLTKITRTGPSAWETKKILAVSFAPLIQPCHSE :::::.::.::: :::::::::::.:..::.: ::: ..::.:.:::::::::.:: ... CCDS69 AGVQKDHENYMKILLKVGGILVMPIEDQLTQIMRTGQNTWESKNILAVSFAPLVQPSKND 100 110 120 130 140 150 230 240 250 260 270 280 pF1KE3 SGKSRLVQLPPVAVRSLQDLARIAIRGTIKKIIHQETVSKNGNGLKNTPRFKRRRVRRRR .:: : ::: :::.::::::: :: :....:..: .: : . :. ::.::..: CCDS69 NGKPDSVGLPPCAVRNLQDLARIYIRRTLRNFINDEMQAK-GIPQRAPPKRKRKRVKQR- 160 170 180 190 200 290 300 310 320 330 340 pF1KE3 METIVFLDKEVFASRISNPSDDNSCEDLEEERREEEEKTPPET-KPD-PPVNFLRQKVLS ..: ::. ... : .: :.. : .::. .::::: :. ::. :: :.::.:... CCDS69 INTYVFVGNQL----IPQPLDSEEDEKMEEDNKEEEEKDHNEAMKPEEPPQNLLREKIMK 210 220 230 240 250 260 350 360 pF1KE3 LPLPDPLKYYLLYYREK ::::. :: :: :.:.: CCDS69 LPLPESLKAYLTYFRDK 270 280 361 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 07:51:59 2016 done: Sun Nov 6 07:51:59 2016 Total Scan time: 3.000 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]