FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB8983, 384 aa 1>>>pF1KB8983 384 - 384 aa - 384 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 10.4827+/-0.000348; mu= -3.4274+/- 0.022 mean_var=360.3074+/-75.309, 0's: 0 Z-trim(125.8): 98 B-trim: 895 in 1/59 Lambda= 0.067567 statistics sampled from 50300 (50402) to 50300 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.843), E-opt: 0.2 (0.591), width: 16 Scan time: 10.760 The best scores are: opt bits E(85289) NP_060889 (OMIM: 137940,601618,607823) transcripti ( 384) 2712 277.4 4e-74 NP_071899 (OMIM: 610928,613674) transcription fact ( 414) 683 79.6 1.5e-14 NP_113627 (OMIM: 612202) transcription factor SOX- ( 388) 559 67.5 6e-11 NP_005625 (OMIM: 300123,312000,313430) transcripti ( 446) 441 56.1 1.9e-07 NP_008873 (OMIM: 601297) protein SOX-15 [Homo sapi ( 233) 430 54.7 2.6e-07 NP_055402 (OMIM: 605923) transcription factor SOX- ( 446) 435 55.5 2.9e-07 NP_000337 (OMIM: 114290,608160,616425) transcripti ( 509) 430 55.0 4.5e-07 NP_003097 (OMIM: 184429,189960,206900) transcripti ( 317) 422 54.1 5.5e-07 NP_004180 (OMIM: 604747) transcription factor SOX- ( 240) 414 53.2 7.7e-07 NP_008872 (OMIM: 602229,609136,611584,613266) tran ( 466) 414 53.5 1.2e-06 NP_005977 (OMIM: 602148) transcription factor SOX- ( 391) 411 53.1 1.3e-06 NP_008874 (OMIM: 601947) transcription factor SOX- ( 315) 404 52.3 1.8e-06 NP_009015 (OMIM: 604974) transcription factor SOX- ( 276) 398 51.7 2.5e-06 NP_003098 (OMIM: 184430) transcription factor SOX- ( 474) 369 49.1 2.6e-05 NP_003099 (OMIM: 600898,615866) transcription fact ( 441) 361 48.3 4.3e-05 NP_821078 (OMIM: 604975,616803) transcription fact ( 377) 341 46.2 0.00015 XP_011519144 (OMIM: 604975,616803) PREDICTED: tran ( 415) 341 46.3 0.00016 XP_005245680 (OMIM: 604748) PREDICTED: transcripti ( 621) 341 46.5 0.00021 NP_005677 (OMIM: 604748) transcription factor SOX- ( 622) 341 46.5 0.00021 NP_003131 (OMIM: 400044,400045,480000) sex-determi ( 204) 329 44.8 0.00022 NP_001248343 (OMIM: 604975,616803) transcription f ( 642) 341 46.5 0.00022 XP_016875389 (OMIM: 604975,616803) PREDICTED: tran ( 715) 341 46.5 0.00023 XP_016875388 (OMIM: 604975,616803) PREDICTED: tran ( 715) 341 46.5 0.00023 XP_016875390 (OMIM: 604975,616803) PREDICTED: tran ( 715) 341 46.5 0.00023 XP_016875387 (OMIM: 604975,616803) PREDICTED: tran ( 715) 341 46.5 0.00023 XP_016875386 (OMIM: 604975,616803) PREDICTED: tran ( 716) 341 46.5 0.00023 NP_001317714 (OMIM: 604975,616803) transcription f ( 728) 341 46.5 0.00024 XP_011519140 (OMIM: 604975,616803) PREDICTED: tran ( 729) 341 46.5 0.00024 XP_016875385 (OMIM: 604975,616803) PREDICTED: tran ( 750) 341 46.5 0.00024 NP_694534 (OMIM: 604975,616803) transcription fact ( 750) 341 46.5 0.00024 XP_011519137 (OMIM: 604975,616803) PREDICTED: tran ( 751) 341 46.5 0.00024 XP_011519136 (OMIM: 604975,616803) PREDICTED: tran ( 751) 341 46.5 0.00024 XP_011519139 (OMIM: 604975,616803) PREDICTED: tran ( 751) 341 46.5 0.00024 XP_016875384 (OMIM: 604975,616803) PREDICTED: tran ( 751) 341 46.5 0.00024 XP_016875381 (OMIM: 604975,616803) PREDICTED: tran ( 751) 341 46.5 0.00024 XP_016875382 (OMIM: 604975,616803) PREDICTED: tran ( 751) 341 46.5 0.00024 XP_016875380 (OMIM: 604975,616803) PREDICTED: tran ( 751) 341 46.5 0.00024 XP_016875383 (OMIM: 604975,616803) PREDICTED: tran ( 751) 341 46.5 0.00024 XP_016875379 (OMIM: 604975,616803) PREDICTED: tran ( 751) 341 46.5 0.00024 NP_001248344 (OMIM: 604975,616803) transcription f ( 753) 341 46.5 0.00024 XP_011519135 (OMIM: 604975,616803) PREDICTED: tran ( 754) 341 46.5 0.00024 NP_008871 (OMIM: 604975,616803) transcription fact ( 763) 341 46.5 0.00024 XP_011519134 (OMIM: 604975,616803) PREDICTED: tran ( 764) 341 46.5 0.00024 XP_016875378 (OMIM: 604975,616803) PREDICTED: tran ( 792) 341 46.6 0.00025 XP_016875377 (OMIM: 604975,616803) PREDICTED: tran ( 793) 341 46.6 0.00025 NP_001139283 (OMIM: 607257) transcription factor S ( 801) 338 46.3 0.00031 NP_059978 (OMIM: 607257) transcription factor SOX- ( 804) 338 46.3 0.00031 NP_201583 (OMIM: 607257) transcription factor SOX- ( 808) 338 46.3 0.00031 NP_001139291 (OMIM: 607257) transcription factor S ( 841) 338 46.3 0.00032 >>NP_060889 (OMIM: 137940,601618,607823) transcription f (384 aa) initn: 2712 init1: 2712 opt: 2712 Z-score: 1451.8 bits: 277.4 E(85289): 4e-74 Smith-Waterman score: 2712; 100.0% identity (100.0% similar) in 384 aa overlap (1-384:1-384) 10 20 30 40 50 60 pF1KB8 MQRSPPGYGAQDDPPARRDCAWAPGHGAAADTRGLAAGPAALAAPAAPASPPSPQRSPPR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_060 MQRSPPGYGAQDDPPARRDCAWAPGHGAAADTRGLAAGPAALAAPAAPASPPSPQRSPPR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB8 SPEPGRYGLSPAGRGERQAADESRIRRPMNAFMVWAKDERKRLAQQNPDLHNAVLSKMLG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_060 SPEPGRYGLSPAGRGERQAADESRIRRPMNAFMVWAKDERKRLAQQNPDLHNAVLSKMLG 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB8 KAWKELNAAEKRPFVEEAERLRVQHLRDHPNYKYRPRRKKQARKARRLEPGLLLPGLAPP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_060 KAWKELNAAEKRPFVEEAERLRVQHLRDHPNYKYRPRRKKQARKARRLEPGLLLPGLAPP 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB8 QPPPEPFPAASGSARAFRELPPLGAEFDGLGLPTPERSPLDGLEPGEAAFFPPPAAPEDC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_060 QPPPEPFPAASGSARAFRELPPLGAEFDGLGLPTPERSPLDGLEPGEAAFFPPPAAPEDC 190 200 210 220 230 240 250 260 270 280 290 300 pF1KB8 ALRPFRAPYAPTELSRDPGGCYGAPLAEALRTAPPAAPLAGLYYGTLGTPGPYPGPLSPP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_060 ALRPFRAPYAPTELSRDPGGCYGAPLAEALRTAPPAAPLAGLYYGTLGTPGPYPGPLSPP 250 260 270 280 290 300 310 320 330 340 350 360 pF1KB8 PEAPPLESAEPLGPAADLWADVDLTEFDQYLNCSRTRPDAPGLPYHVALAKLGPRAMSCP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_060 PEAPPLESAEPLGPAADLWADVDLTEFDQYLNCSRTRPDAPGLPYHVALAKLGPRAMSCP 310 320 330 340 350 360 370 380 pF1KB8 EESSLISALSDASSAVYYSACISG :::::::::::::::::::::::: NP_060 EESSLISALSDASSAVYYSACISG 370 380 >>NP_071899 (OMIM: 610928,613674) transcription factor S (414 aa) initn: 819 init1: 541 opt: 683 Z-score: 382.4 bits: 79.6 E(85289): 1.5e-14 Smith-Waterman score: 824; 44.9% identity (60.0% similar) in 390 aa overlap (23-346:3-380) 10 20 30 40 50 pF1KB8 MQRSPPGYGAQDDPPARRDCAWAPGHGAAAD--TRGLAAGPAALAA--PAAPASPPSPQR .: : :.: .. .: ::..:. : : :: NP_071 MSSPDAGYASDDQSQTQSALPAVMAGLGPCPWAESLSPIG 10 20 30 40 60 70 80 90 100 110 pF1KB8 SPPRSPE-PGRYGLSPAGRGERQAADESRIRRPMNAFMVWAKDERKRLAQQNPDLHNAVL . . : :. : .::: . : : :::::::::::::::::::::::::::::::: : NP_071 DMKVKGEAPANSG-APAGAAGR-AKGESRIRRPMNAFMVWAKDERKRLAQQNPDLHNAEL 50 60 70 80 90 120 130 140 150 160 170 pF1KB8 SKMLGKAWKELNAAEKRPFVEEAERLRVQHLRDHPNYKYRPRRKKQARKARRLEPGLLLP ::::::.:: :. :::::::::::::::::..:::::::::::.::... .:.: :.: NP_071 SKMLGKSWKALTLAEKRPFVEEAERLRVQHMQDHPNYKYRPRRRKQVKRLKRVEGGFL-H 100 110 120 130 140 150 180 190 200 210 pF1KB8 GLAPPQ-----P--------------PPEPFPAASG-----SARAFRELPPLGAE-FDGL ::: :: : : . :::. . .:. ::: .:: NP_071 GLAEPQAAALGPEGGRVAMDGLGLQFPEQGFPAGPPLLPPHMGGHYRDCQSLGAPPLDGY 160 170 180 190 200 210 220 230 240 250 260 270 pF1KB8 GLPTPERSPLDGLEPGEAAFFPPPAAPEDCALRPFRAPYAPTELSRDPGGCYGAPLAEAL ::::. :::::..: . ::: : : :: : . :. ...: : .: : . NP_071 PLPTPDTSPLDGVDP-DPAFFAAPM-PGDC---PAAGTYSYAQVS-DYAGPPEPPAGPMH 220 230 240 250 260 270 280 290 pF1KB8 -RTAP-PAAP-LAGL---------YYGTLGTPG-----------------------PYPG : .: ::.: . :: :::..:.:: : :: NP_071 PRLGPEPAGPSIPGLLAPPSALHVYYGAMGSPGAGGGRGFQMQPQHQHQHQHQHHPPGPG 280 290 300 310 320 330 300 310 320 330 340 350 pF1KB8 PLSPPPEAPPL-ESAEPLGPAADLWADVDLTEFDQYLNCSRTRPDAPGLPYHVALAKLGP :::::: : ....: :: .: ..:: :::.:::. .:. ::::. NP_071 QPSPPPEALPCRDGTDPSQPA-ELLGEVDRTEFEQYLHFV-CKPEM-GLPYQGHDSGVNL 340 350 360 370 380 360 370 380 pF1KB8 RAMSCPEESSLISALSDASSAVYYSACISG NP_071 PDSHGAISSVVSDASSAVYYCNYPDV 390 400 410 >>NP_113627 (OMIM: 612202) transcription factor SOX-7 [H (388 aa) initn: 745 init1: 480 opt: 559 Z-score: 317.5 bits: 67.5 E(85289): 6e-11 Smith-Waterman score: 758; 42.3% identity (58.2% similar) in 397 aa overlap (30-371:2-376) 10 20 30 40 50 60 pF1KB8 MQRSPPGYGAQDDPPARRDCAWAPGHGAAADTRGLAAGPAALAAPAAPASPPSPQRSPPR :. : : .: :: : . : ::: NP_113 MASLLGAYPWPEGLECPALDAELSDGQ-SPPA 10 20 30 70 80 90 100 110 120 pF1KB8 SPEPGRYGLSPAGRGERQAADESRIRRPMNAFMVWAKDERKRLAQQNPDLHNAVLSKMLG :.: :. .: .::::::::::::::::::::::: :::::::: :::::: NP_113 VPRP------PGDKG-----SESRIRRPMNAFMVWAKDERKRLAVQNPDLHNAELSKMLG 40 50 60 70 80 130 140 150 160 170 pF1KB8 KAWKELNAAEKRPFVEEAERLRVQHLRDHPNYKYRPRRKKQARK-ARRLEPGLLLPGLAP :.:: :. ..:::.:.::::::.::..:.:::::::::::::.. .:..::.:: .:. NP_113 KSWKALTLSQKRPYVDEAERLRLQHMQDYPNYKYRPRRKKQAKRLCKRVDPGFLLSSLSR 90 100 110 120 130 140 180 190 200 210 pF1KB8 PQPP-PEPFPAASG------------------SARAFRELPPLGAEFDGL---------G : :: .. : : :. . : :. : : NP_113 DQNALPEKRSGSRGALGEKEDRGEYSPGTALPSLRGCYHEGPAGGGGGGTPSSVDTYPYG 150 160 170 180 190 200 220 230 240 250 260 pF1KB8 LPTP-ERSPLDGLEPGEAAFFPPPAAPEDCALRPFRAPYAP-----TELSRDPGGCYGAP :::: : :::: ::: : .:: : : .: : :. : : . .: : . : NP_113 LPTPPEMSPLDVLEP-EQTFFSSPCQEEHG--HPRRIPHLPGHPYSPEYAPSPLHC-SHP 210 220 230 240 250 270 280 290 300 pF1KB8 LAE-ALRTAP--------PAAPLAGLYYGTLGTPGP-------YPGPLSPPPEAPPLESA :. :: .: :. : . ::. .: : . : :::::: : ... NP_113 LGSLALGQSPGVSMMSPVPGCPPSPAYYSP-ATYHPLHSNLQAHLGQLSPPPEHPGFDAL 260 270 280 290 300 310 310 320 330 340 350 360 pF1KB8 EPLGPAADLWADVDLTEFDQYLNCSRTRPD-APG---LPYHVALAKLGPRAMSCPEESSL . :. . .: .:.: .::::::: . .:: : : : :: .... : . : :.:: NP_113 DQLSQV-ELLGDMDRNEFDQYLN-TPGHPDSATGAMALSGHVPVSQVTP---TGPTETSL 320 330 340 350 360 370 370 380 pF1KB8 ISALSDASSAVYYSACISG ::.:.: NP_113 ISVLADATATYYNSYSVS 380 >>NP_005625 (OMIM: 300123,312000,313430) transcription f (446 aa) initn: 401 init1: 365 opt: 441 Z-score: 254.5 bits: 56.1 E(85289): 1.9e-07 Smith-Waterman score: 456; 30.9% identity (55.7% similar) in 327 aa overlap (6-305:56-382) 10 20 30 pF1KB8 MQRSPPGYGAQDDPPARRDCAWAPGHGAAADT--R :. :: . : . ::. . .: . NP_005 ISLPFPPDSLAHRPPSSAPTESQGLFTVAAPAPGAPSPPATLAHLLPAPAMYSLLETELK 30 40 50 60 70 80 40 50 60 70 80 90 pF1KB8 GLAAGPAALAAPAAPASPPSPQRSPPRSPEPGRYGLSPAG--RGERQAADESRIRRPMNA . .. :. :. ..::.: . .: . . : . .: : ..:..:..::::: NP_005 NPVGTPTQAAGTGGPAAPGGAGKSSANAAGGANSGGGSSGGASGGGGGTDQDRVKRPMNA 90 100 110 120 130 140 100 110 120 130 140 150 pF1KB8 FMVWAKDERKRLAQQNPDLHNAVLSKMLGKAWKELNAAEKRPFVEEAERLRVQHLRDHPN ::::.. .:...: .:: .::. .:: :: :: :. ::::::..::.:::. :....:. NP_005 FMVWSRGQRRKMALENPKMHNSEISKRLGADWKLLTDAEKRPFIDEAKRLRAVHMKEYPD 150 160 170 180 190 200 160 170 180 190 200 pF1KB8 YKYRPRRKKQA--RKARRLEP-GLLLPGLAPPQPPPEPFPAASGSARAFRELPPLGAEFD :::::::: .. .: . : ::: :: : ::..: . . .. . NP_005 YKYRPRRKTKTLLKKDKYSLPSGLLPPGAAAAAAAAAAAAAAASSPVGVGQRLDTYTHVN 210 220 230 240 250 260 210 220 230 240 250 pF1KB8 GL--GLPTPERSPLDGLEP-GEAAFFPPPAAPE----DCA---LRPFRAPYAPTELSRDP : : . . : .: . .. :::: : : : :. : : . .. NP_005 GWANGAYSLVQEQLGYAQPPSMSSPPPPPALPPMHRYDMAGLQYSPMMPPGAQSYMNVAA 270 280 290 300 310 320 260 270 280 290 300 pF1KB8 GGC----YG--APLAEALRTAP----PAAPLAGLYYGTLGTPGPYPGPLSPPPEAPPLES .. :: :: : : .: ::. :. .. . ::. . .. : .:: NP_005 AAAAASGYGGMAPSATAAAAAAYGQQPATAAAAAAAAAAMSLGPMGSVVKSEPSSPPPAI 330 340 350 360 370 380 310 320 330 340 350 360 pF1KB8 AEPLGPAADLWADVDLTEFDQYLNCSRTRPDAPGLPYHVALAKLGPRAMSCPEESSLISA NP_005 ASHSQRACLGDLRDMISMYLPPGGDAADAASPLPGGRLHGVHQHYQGAGTAVNGTVPLTH 390 400 410 420 430 440 >>NP_008873 (OMIM: 601297) protein SOX-15 [Homo sapiens] (233 aa) initn: 544 init1: 403 opt: 430 Z-score: 252.3 bits: 54.7 E(85289): 2.6e-07 Smith-Waterman score: 431; 37.7% identity (55.2% similar) in 239 aa overlap (37-255:2-231) 10 20 30 40 50 60 pF1KB8 GYGAQDDPPARRDCAWAPGHGAAADTRGLAAGPAALAAPAAPASPPSPQRSPPRSPEPG- : :.. : ::. . : : NP_008 MALPGSSQDQAWSLEPPAATAAASSSSGPQE 10 20 30 70 80 90 100 110 120 pF1KB8 RYGL-SPAGRGERQAADESRIRRPMNAFMVWAKDERKRLAQQNPDLHNAVLSKMLGKAWK : : :::. : . ...:::::::::.. .:...::::: .::. .:: :: :: NP_008 REGAGSPAAPG---TLPLEKVKRPMNAFMVWSSAQRRQMAQQNPKMHNSEISKRLGAQWK 40 50 60 70 80 130 140 150 160 170 180 pF1KB8 ELNAAEKRPFVEEAERLRVQHLRDHPNYKYRPRRKKQARKARRLEPGLLLPGLAPPQPPP :. :::::::::.:::..::::.:.:::::::: .. : . : .:: : NP_008 LLDEDEKRPFVEEAKRLRARHLRDYPDYKYRPRRKAKSSGAGPSRCGQGRGNLASGGPLW 90 100 110 120 130 140 190 200 210 220 pF1KB8 EPFPAASGSARAFRELPP----------LGAEFDGLGLPTPERSP-----LDG-LEPGEA : :.. .:.: :: :. : :.: : :.: : : . NP_008 GPGYATTQPSRGFGYRPPSYSTAYLPGSYGSSHCKLEAPSPCSLPQSDPRLQGELLPTYT 150 160 170 180 190 200 230 240 250 260 270 280 pF1KB8 AFFPPPAAPEDCALRPFRAPYA--PTELSRDPGGCYGAPLAEALRTAPPAAPLAGLYYGT ..:: ..: :. : : : :. NP_008 HYLPP-GSPT-----PYNPPLAGAPMPLTHL 210 220 230 >>NP_055402 (OMIM: 605923) transcription factor SOX-8 [H (446 aa) initn: 487 init1: 397 opt: 435 Z-score: 251.4 bits: 55.5 E(85289): 2.9e-07 Smith-Waterman score: 446; 31.7% identity (48.7% similar) in 398 aa overlap (12-381:31-407) 10 20 30 40 pF1KB8 MQRSPPGYGAQDDPPARRDCAWAPGHGAAADTRGLAAG-PA : ::. : . : : :. . : : : :: NP_055 MLDMSEARSQPPCSPSGTASSMSHVEDSDSDAPPSP---AGSEGLGRAGVAVGGARGDPA 10 20 30 40 50 50 60 70 80 90 pF1KB8 ALAAPAAPASPPSPQRSPPRS------PEPGRYGLSPAGRGERQAADESRIRRPMNAFMV : :: . . .. : : : : : : .: . ...:::::::: NP_055 EAADERFPACIRDAVSQVLKGYDWSLVPMPVRGG----GGGALKA--KPHVKRPMNAFMV 60 70 80 90 100 110 100 110 120 130 140 150 pF1KB8 WAKDERKRLAQQNPDLHNAVLSKMLGKAWKELNAAEKRPFVEEAERLRVQHLRDHPNYKY ::. :..::.: : :::: ::: ::: :. :. .:::::::::::::::: .:::.::: NP_055 WAQAARRKLADQYPHLHNAELSKTLGKLWRLLSESEKRPFVEEAERLRVQHKKDHPDYKY 120 130 140 150 160 170 160 170 180 190 200 210 pF1KB8 RPRRKKQARKARR-LEPGLLLPGLAPPQPPPEPFPAASGSARAFRELPPLGAEFDGLGLP .:::.:.:. .. . : :.: . : .: . . .. : : : NP_055 QPRRRKSAKAGHSDSDSG---AELGPHPGGGAVYKAEAGLGDGHHHGDHTGQTH---GPP 180 190 200 210 220 220 230 240 250 260 pF1KB8 TPERSPLDGLEPGEAA--FFPPPAAPEDCALRPFRAPYAP-TELSRDPGGCYGA----PL :: .: :. . : . : : . . . . .::: . : . : . NP_055 TPPTTPKTELQQAGAKPELKLEGRRPVDSGRQNIDFSNVDISELSSEVMGTMDAFDVHEF 230 240 250 260 270 280 270 280 290 300 310 pF1KB8 AEALRTAPPAAPLAGLYYG-TLGTPGPYP------GP---LSPPPEAPPLESAEPLGPAA . : . :: : : :: . : : .: :: .:: . :. NP_055 DQYLPLGGPAPPEPGQAYGGAYFHAGASPVWAHKSAPSASASPTETGPPRPHIKTEQPSP 290 300 310 320 330 340 320 330 340 350 360 370 pF1KB8 DLWADVDLTEFDQYLNCS---RTRPDAPGLPYHVALAKLGPRAMSCPEESSLISALSDAS ..: : : .:: . : ::. :. . . : . :: .: . NP_055 GHYGDQPRGSPD-YGSCSGQSSATPAAPAGPFAGSQGDYGDL-----QASSYYGAYPGYA 350 360 370 380 390 380 pF1KB8 SAVYYSACISG ..: : NP_055 PGLYQYPCFHSPRRPYASPLLNGLALPPAHSPTSHWDQPVYTTLTRP 400 410 420 430 440 >>NP_000337 (OMIM: 114290,608160,616425) transcription f (509 aa) initn: 459 init1: 391 opt: 430 Z-score: 248.0 bits: 55.0 E(85289): 4.5e-07 Smith-Waterman score: 468; 32.3% identity (52.9% similar) in 359 aa overlap (7-316:17-372) 10 20 30 40 pF1KB8 MQRSPPGYGAQDDPPARRDCAWAP-GHGAAADTRG-------LAAGPAAL : .. .: .: : .: :...::.. . : : NP_000 MNLLDPFMKMTDEQEKGLSGAPSPTMSEDSAGSPCPSGSGSDTENTRPQENTFPKGEPDL 10 20 30 40 50 60 50 60 70 80 90 100 pF1KB8 AAPAAPASPPSPQRSPPRSPEPGR-YGLSPAG-RGERQAADESRIRRPMNAFMVWAKDER . . : : . : . : : : . .. .. ...::::::::::. : NP_000 KKESEEDKFPVCIREAVSQVLKGYDWTLVPMPVRVNGSSKNKPHVKRPMNAFMVWAQAAR 70 80 90 100 110 120 110 120 130 140 150 160 pF1KB8 KRLAQQNPDLHNAVLSKMLGKAWKELNAAEKRPFVEEAERLRVQHLRDHPNYKYRPRRKK ..::.: : :::: ::: ::: :. :: .:::::::::::::::: .:::.:::.:::.: NP_000 RKLADQYPHLHNAELSKTLGKLWRLLNESEKRPFVEEAERLRVQHKKDHPDYKYQPRRRK 130 140 150 160 170 180 170 180 190 200 210 pF1KB8 QARKARRLEPGLLLPGLAPPQPPPEPFPAASG-SARAFRELPPLGAEFDGL--GLPTPER ...... :. . . : : :. .. :. : : .: : ::: NP_000 SVKNGQAEAEEATEQTHISPNAIFKALQADSPHSSSGMSEVHSPG-EHSGQSQGPPTPPT 190 200 210 220 230 220 230 240 250 pF1KB8 SPLDGLEPGEAAF------FP-----PPAAPEDCALRPFRAPYAPTELSRD--------- .: ..::.: . .: :: .: . . . . . : NP_000 TPKTDVQPGKADLKREGRPLPEGGRQPPIDFRDVDIGELSSDVISNIETFDVNEFDQYLP 240 250 260 270 280 290 260 270 280 290 300 pF1KB8 PGGCYGAPLAEALRT-----------APPAAPLAG-LYYGTLGTPGPYPG--PLSPP-PE :.: :.: ... : : ::. :: .... .: : : : .:: :. NP_000 PNGHPGVPATHGQVTYTGSYGISSTAATPAS--AGHVWMSKQQAPPPPPQQPPQAPPAPQ 300 310 320 330 340 350 310 320 330 340 350 360 pF1KB8 APPL-ESAEPLGPAADLWADVDLTEFDQYLNCSRTRPDAPGLPYHVALAKLGPRAMSCPE ::: ..: : ::: NP_000 APPQPQAAPPQQPAAPPQQPQAHTLTTLSSEPGQSQRTHIKTEQLSPSHYSEQQQHSPQQ 360 370 380 390 400 410 >>NP_003097 (OMIM: 184429,189960,206900) transcription f (317 aa) initn: 465 init1: 383 opt: 422 Z-score: 246.4 bits: 54.1 E(85289): 5.5e-07 Smith-Waterman score: 422; 46.5% identity (74.4% similar) in 129 aa overlap (51-176:11-135) 30 40 50 60 70 80 pF1KB8 AWAPGHGAAADTRGLAAGPAALAAPAAPASPPSPQRSPPRSPEPGRYGLSPAGRGERQAA ::.::.. . : . :: ..... NP_003 MYNMMETELKPPGPQQTSGGG--GGNSTAAAAGGNQKNSP 10 20 30 90 100 110 120 130 140 pF1KB8 DESRIRRPMNAFMVWAKDERKRLAQQNPDLHNAVLSKMLGKAWKELNAAEKRPFVEEAER : :..:::::::::.. .:...::.:: .::. .:: :: :: :. .:::::..::.: NP_003 D--RVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSETEKRPFIDEAKR 40 50 60 70 80 90 150 160 170 180 190 pF1KB8 LRVQHLRDHPNYKYRPRRKKQA--RKARRLEPG-LLLPGLAPPQPPPEPFPAASGSARAF ::. :...::.:::::::: .. .: . :: :: :: NP_003 LRALHMKEHPDYKYRPRRKTKTLMKKDKYTLPGGLLAPGGNSMASGVGVGAGLGAGVNQR 100 110 120 130 140 150 200 210 220 230 240 250 pF1KB8 RELPPLGAEFDGLGLPTPERSPLDGLEPGEAAFFPPPAAPEDCALRPFRAPYAPTELSRD NP_003 MDSYAHMNGWSNGSYSMMQDQLGYPQHPGLNAHGAAQMQPMHRYDVSALQYNSMTSSQTY 160 170 180 190 200 210 >>NP_004180 (OMIM: 604747) transcription factor SOX-14 [ (240 aa) initn: 455 init1: 367 opt: 414 Z-score: 243.7 bits: 53.2 E(85289): 7.7e-07 Smith-Waterman score: 433; 36.5% identity (59.2% similar) in 260 aa overlap (85-330:8-232) 60 70 80 90 100 110 pF1KB8 QRSPPRSPEPGRYGLSPAGRGERQAADESRIRRPMNAFMVWAKDERKRLAQQNPDLHNAV :.:::::::::.. .:...::.:: .::. NP_004 MSKPSDHIKRPMNAFMVWSRGQRRKMAQENPKMHNSE 10 20 30 120 130 140 150 160 170 pF1KB8 LSKMLGKAWKELNAAEKRPFVEEAERLRVQHLRDHPNYKYRPRRKKQA--RKARRLEPGL .:: :: :: :. :::::...::.:::.::...::.:::::::: . .: : . : NP_004 ISKRLGAEWKLLSEAEKRPYIDEAKRLRAQHMKEHPDYKYRPRRKPKNLLKKDRYVFP-- 40 50 60 70 80 90 180 190 200 210 220 230 pF1KB8 LLPGLAPPQPPPEPFPAASGSARAFRELPPLGAEFDGLGLPTPERSPLDGLEPGEAAFFP :: :. .:. ::. :.:: ::: : .::.. ::.: NP_004 -LPYLGD----TDPLKAAGL---------PVGAS-DGL-LSAPEKA---------RAFLP 100 110 120 130 240 250 260 270 280 pF1KB8 PPAAPEDCALRPFRAPYAPTELSRDPGGCYG-APLAEALRTAPPAAPLA--GLYYGTLGT : .:: . : : : .. . ... .: .: . : . : :. :. . .:.:. NP_004 PASAPYSL-LDP--AQFSSSAIQK-----MGEVPHTLATGALPYASTLGYQNGAFGSLSC 140 150 160 170 180 290 300 310 320 330 340 pF1KB8 PGPY----PGPLSPPPEAP---PLESAEPLGP--AADLWADVDLTEFDQYLNCSRTRPDA :. . :.: .: .: :: : : : :. . : .: : NP_004 PSQHTHTHPSPTNPGYVVPCNCTAWSASTLQPPVAYILFPGMTKTGIDPYSSAHATAM 190 200 210 220 230 240 350 360 370 380 pF1KB8 PGLPYHVALAKLGPRAMSCPEESSLISALSDASSAVYYSACISG >>NP_008872 (OMIM: 602229,609136,611584,613266) transcri (466 aa) initn: 446 init1: 386 opt: 414 Z-score: 240.1 bits: 53.5 E(85289): 1.2e-06 Smith-Waterman score: 414; 45.5% identity (63.6% similar) in 154 aa overlap (85-228:104-254) 60 70 80 90 100 110 pF1KB8 QRSPPRSPEPGRYGLSPAGRGERQAADESRIRRPMNAFMVWAKDERKRLAQQNPDLHNAV ..::::::::::. :..::.: : :::: NP_008 EAVSQVLSGYDWTLVPMPVRVNGASKSKPHVKRPMNAFMVWAQAARRKLADQYPHLHNAE 80 90 100 110 120 130 120 130 140 150 160 170 pF1KB8 LSKMLGKAWKELNAAEKRPFVEEAERLRVQHLRDHPNYKYRPRRKKQARKARRLEPGLLL ::: ::: :. :: ..::::.:::::::.:: .:::.:::.:::.:... :. NP_008 LSKTLGKLWRLLNESDKRPFIEEAERLRMQHKKDHPDYKYQPRRRKNGKAAQGEAE---C 140 150 160 170 180 190 180 190 200 210 220 pF1KB8 PGLAPPQPPPEPFPAASGSARAFRELPPLGAEF-DG---------LGLPTPERSPLDGLE :: : . : ::. .. : :. . :: : ::: .: :. NP_008 PGGEAEQGGTAAIQAHYKSAHLDHRHPGEGSPMSDGNPEHPSGQSHGPPTPPTTPKTELQ 200 210 220 230 240 250 230 240 250 260 270 280 pF1KB8 PGEAAFFPPPAAPEDCALRPFRAPYAPTELSRDPGGCYGAPLAEALRTAPPAAPLAGLYY :.: NP_008 SGKADPKRDGRSMGEGGKPHIDFGNVDIGEISHEVMSNMETFDVAELDQYLPPNGHPGHV 260 270 280 290 300 310 384 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 04:25:11 2016 done: Tue Nov 8 04:25:13 2016 Total Scan time: 10.760 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]