FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB8983, 384 aa 1>>>pF1KB8983 384 - 384 aa - 384 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 9.9681+/-0.00087; mu= -0.1608+/- 0.053 mean_var=334.2642+/-68.978, 0's: 0 Z-trim(118.2): 43 B-trim: 188 in 1/53 Lambda= 0.070150 statistics sampled from 19003 (19046) to 19003 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.839), E-opt: 0.2 (0.585), width: 16 Scan time: 3.760 The best scores are: opt bits E(32554) CCDS13552.1 SOX18 gene_id:54345|Hs108|chr20 ( 384) 2712 287.3 1.6e-77 CCDS6159.1 SOX17 gene_id:64321|Hs108|chr8 ( 414) 683 81.9 1.1e-15 CCDS5977.1 SOX7 gene_id:83595|Hs108|chr8 ( 388) 559 69.4 6.4e-12 >>CCDS13552.1 SOX18 gene_id:54345|Hs108|chr20 (384 aa) initn: 2712 init1: 2712 opt: 2712 Z-score: 1505.2 bits: 287.3 E(32554): 1.6e-77 Smith-Waterman score: 2712; 100.0% identity (100.0% similar) in 384 aa overlap (1-384:1-384) 10 20 30 40 50 60 pF1KB8 MQRSPPGYGAQDDPPARRDCAWAPGHGAAADTRGLAAGPAALAAPAAPASPPSPQRSPPR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 MQRSPPGYGAQDDPPARRDCAWAPGHGAAADTRGLAAGPAALAAPAAPASPPSPQRSPPR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB8 SPEPGRYGLSPAGRGERQAADESRIRRPMNAFMVWAKDERKRLAQQNPDLHNAVLSKMLG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 SPEPGRYGLSPAGRGERQAADESRIRRPMNAFMVWAKDERKRLAQQNPDLHNAVLSKMLG 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB8 KAWKELNAAEKRPFVEEAERLRVQHLRDHPNYKYRPRRKKQARKARRLEPGLLLPGLAPP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 KAWKELNAAEKRPFVEEAERLRVQHLRDHPNYKYRPRRKKQARKARRLEPGLLLPGLAPP 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB8 QPPPEPFPAASGSARAFRELPPLGAEFDGLGLPTPERSPLDGLEPGEAAFFPPPAAPEDC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 QPPPEPFPAASGSARAFRELPPLGAEFDGLGLPTPERSPLDGLEPGEAAFFPPPAAPEDC 190 200 210 220 230 240 250 260 270 280 290 300 pF1KB8 ALRPFRAPYAPTELSRDPGGCYGAPLAEALRTAPPAAPLAGLYYGTLGTPGPYPGPLSPP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 ALRPFRAPYAPTELSRDPGGCYGAPLAEALRTAPPAAPLAGLYYGTLGTPGPYPGPLSPP 250 260 270 280 290 300 310 320 330 340 350 360 pF1KB8 PEAPPLESAEPLGPAADLWADVDLTEFDQYLNCSRTRPDAPGLPYHVALAKLGPRAMSCP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 PEAPPLESAEPLGPAADLWADVDLTEFDQYLNCSRTRPDAPGLPYHVALAKLGPRAMSCP 310 320 330 340 350 360 370 380 pF1KB8 EESSLISALSDASSAVYYSACISG :::::::::::::::::::::::: CCDS13 EESSLISALSDASSAVYYSACISG 370 380 >>CCDS6159.1 SOX17 gene_id:64321|Hs108|chr8 (414 aa) initn: 819 init1: 541 opt: 683 Z-score: 395.0 bits: 81.9 E(32554): 1.1e-15 Smith-Waterman score: 824; 44.9% identity (60.0% similar) in 390 aa overlap (23-346:3-380) 10 20 30 40 50 pF1KB8 MQRSPPGYGAQDDPPARRDCAWAPGHGAAAD--TRGLAAGPAALAA--PAAPASPPSPQR .: : :.: .. .: ::..:. : : :: CCDS61 MSSPDAGYASDDQSQTQSALPAVMAGLGPCPWAESLSPIG 10 20 30 40 60 70 80 90 100 110 pF1KB8 SPPRSPE-PGRYGLSPAGRGERQAADESRIRRPMNAFMVWAKDERKRLAQQNPDLHNAVL . . : :. : .::: . : : :::::::::::::::::::::::::::::::: : CCDS61 DMKVKGEAPANSG-APAGAAGR-AKGESRIRRPMNAFMVWAKDERKRLAQQNPDLHNAEL 50 60 70 80 90 120 130 140 150 160 170 pF1KB8 SKMLGKAWKELNAAEKRPFVEEAERLRVQHLRDHPNYKYRPRRKKQARKARRLEPGLLLP ::::::.:: :. :::::::::::::::::..:::::::::::.::... .:.: :.: CCDS61 SKMLGKSWKALTLAEKRPFVEEAERLRVQHMQDHPNYKYRPRRRKQVKRLKRVEGGFL-H 100 110 120 130 140 150 180 190 200 210 pF1KB8 GLAPPQ-----P--------------PPEPFPAASG-----SARAFRELPPLGAE-FDGL ::: :: : : . :::. . .:. ::: .:: CCDS61 GLAEPQAAALGPEGGRVAMDGLGLQFPEQGFPAGPPLLPPHMGGHYRDCQSLGAPPLDGY 160 170 180 190 200 210 220 230 240 250 260 270 pF1KB8 GLPTPERSPLDGLEPGEAAFFPPPAAPEDCALRPFRAPYAPTELSRDPGGCYGAPLAEAL ::::. :::::..: . ::: : : :: : . :. ...: : .: : . CCDS61 PLPTPDTSPLDGVDP-DPAFFAAPM-PGDC---PAAGTYSYAQVS-DYAGPPEPPAGPMH 220 230 240 250 260 270 280 290 pF1KB8 -RTAP-PAAP-LAGL---------YYGTLGTPG-----------------------PYPG : .: ::.: . :: :::..:.:: : :: CCDS61 PRLGPEPAGPSIPGLLAPPSALHVYYGAMGSPGAGGGRGFQMQPQHQHQHQHQHHPPGPG 280 290 300 310 320 330 300 310 320 330 340 350 pF1KB8 PLSPPPEAPPL-ESAEPLGPAADLWADVDLTEFDQYLNCSRTRPDAPGLPYHVALAKLGP :::::: : ....: :: .: ..:: :::.:::. .:. ::::. CCDS61 QPSPPPEALPCRDGTDPSQPA-ELLGEVDRTEFEQYLHFV-CKPEM-GLPYQGHDSGVNL 340 350 360 370 380 360 370 380 pF1KB8 RAMSCPEESSLISALSDASSAVYYSACISG CCDS61 PDSHGAISSVVSDASSAVYYCNYPDV 390 400 410 >>CCDS5977.1 SOX7 gene_id:83595|Hs108|chr8 (388 aa) initn: 745 init1: 480 opt: 559 Z-score: 327.5 bits: 69.4 E(32554): 6.4e-12 Smith-Waterman score: 758; 42.3% identity (58.2% similar) in 397 aa overlap (30-371:2-376) 10 20 30 40 50 60 pF1KB8 MQRSPPGYGAQDDPPARRDCAWAPGHGAAADTRGLAAGPAALAAPAAPASPPSPQRSPPR :. : : .: :: : . : ::: CCDS59 MASLLGAYPWPEGLECPALDAELSDGQ-SPPA 10 20 30 70 80 90 100 110 120 pF1KB8 SPEPGRYGLSPAGRGERQAADESRIRRPMNAFMVWAKDERKRLAQQNPDLHNAVLSKMLG :.: :. .: .::::::::::::::::::::::: :::::::: :::::: CCDS59 VPRP------PGDKG-----SESRIRRPMNAFMVWAKDERKRLAVQNPDLHNAELSKMLG 40 50 60 70 80 130 140 150 160 170 pF1KB8 KAWKELNAAEKRPFVEEAERLRVQHLRDHPNYKYRPRRKKQARK-ARRLEPGLLLPGLAP :.:: :. ..:::.:.::::::.::..:.:::::::::::::.. .:..::.:: .:. CCDS59 KSWKALTLSQKRPYVDEAERLRLQHMQDYPNYKYRPRRKKQAKRLCKRVDPGFLLSSLSR 90 100 110 120 130 140 180 190 200 210 pF1KB8 PQPP-PEPFPAASG------------------SARAFRELPPLGAEFDGL---------G : :: .. : : :. . : :. : : CCDS59 DQNALPEKRSGSRGALGEKEDRGEYSPGTALPSLRGCYHEGPAGGGGGGTPSSVDTYPYG 150 160 170 180 190 200 220 230 240 250 260 pF1KB8 LPTP-ERSPLDGLEPGEAAFFPPPAAPEDCALRPFRAPYAP-----TELSRDPGGCYGAP :::: : :::: ::: : .:: : : .: : :. : : . .: : . : CCDS59 LPTPPEMSPLDVLEP-EQTFFSSPCQEEHG--HPRRIPHLPGHPYSPEYAPSPLHC-SHP 210 220 230 240 250 270 280 290 300 pF1KB8 LAE-ALRTAP--------PAAPLAGLYYGTLGTPGP-------YPGPLSPPPEAPPLESA :. :: .: :. : . ::. .: : . : :::::: : ... CCDS59 LGSLALGQSPGVSMMSPVPGCPPSPAYYSP-ATYHPLHSNLQAHLGQLSPPPEHPGFDAL 260 270 280 290 300 310 310 320 330 340 350 360 pF1KB8 EPLGPAADLWADVDLTEFDQYLNCSRTRPD-APG---LPYHVALAKLGPRAMSCPEESSL . :. . .: .:.: .::::::: . .:: : : : :: .... : . : :.:: CCDS59 DQLSQV-ELLGDMDRNEFDQYLN-TPGHPDSATGAMALSGHVPVSQVTP---TGPTETSL 320 330 340 350 360 370 370 380 pF1KB8 ISALSDASSAVYYSACISG ::.:.: CCDS59 ISVLADATATYYNSYSVS 380 384 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 04:25:10 2016 done: Tue Nov 8 04:25:11 2016 Total Scan time: 3.760 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]