FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE2246, 300 aa 1>>>pF1KE2246 300 - 300 aa - 300 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.9036+/-0.000724; mu= 15.6122+/- 0.044 mean_var=135.5740+/-25.754, 0's: 0 Z-trim(115.2): 56 B-trim: 11 in 1/52 Lambda= 0.110150 statistics sampled from 15707 (15768) to 15707 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.808), E-opt: 0.2 (0.484), width: 16 Scan time: 2.770 The best scores are: opt bits E(32554) CCDS13532.1 TNFRSF6B gene_id:8771|Hs108|chr20 ( 300) 2139 350.4 9.5e-97 CCDS6326.1 TNFRSF11B gene_id:4982|Hs108|chr8 ( 401) 597 105.5 6.7e-23 CCDS145.1 TNFRSF1B gene_id:7133|Hs108|chr1 ( 461) 472 85.7 7e-17 CCDS8544.1 LTBR gene_id:4055|Hs108|chr12 ( 435) 417 77.0 2.9e-14 CCDS4921.1 TNFRSF21 gene_id:27242|Hs108|chr6 ( 655) 412 76.4 6.5e-14 CCDS59233.1 LTBR gene_id:4055|Hs108|chr12 ( 416) 405 75.0 1.1e-13 CCDS44046.1 TNFRSF14 gene_id:8764|Hs108|chr1 ( 283) 353 66.6 2.5e-11 CCDS74227.1 TNFRSF11A gene_id:8792|Hs108|chr18 ( 263) 342 64.8 8.1e-11 CCDS74228.1 TNFRSF11A gene_id:8792|Hs108|chr18 ( 337) 342 64.9 9.5e-11 >>CCDS13532.1 TNFRSF6B gene_id:8771|Hs108|chr20 (300 aa) initn: 2139 init1: 2139 opt: 2139 Z-score: 1850.4 bits: 350.4 E(32554): 9.5e-97 Smith-Waterman score: 2139; 100.0% identity (100.0% similar) in 300 aa overlap (1-300:1-300) 10 20 30 40 50 60 pF1KE2 MRALEGPGLSLLCLVLALPALLPVPAVRGVAETPTYPWRDAETGERLVCAQCPPGTFVQR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 MRALEGPGLSLLCLVLALPALLPVPAVRGVAETPTYPWRDAETGERLVCAQCPPGTFVQR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 PCRRDSPTTCGPCPPRHYTQFWNYLERCRYCNVLCGEREEEARACHATHNRACRCRTGFF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 PCRRDSPTTCGPCPPRHYTQFWNYLERCRYCNVLCGEREEEARACHATHNRACRCRTGFF 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE2 AHAGFCLEHASCPPGAGVIAPGTPSQNTQCQPCPPGTFSASSSSSEQCQPHRNCTALGLA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 AHAGFCLEHASCPPGAGVIAPGTPSQNTQCQPCPPGTFSASSSSSEQCQPHRNCTALGLA 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE2 LNVPGSSSHDTLCTSCTGFPLSTRVPGAEECERAVIDFVAFQDISIKRLQRLLQALEAPE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 LNVPGSSSHDTLCTSCTGFPLSTRVPGAEECERAVIDFVAFQDISIKRLQRLLQALEAPE 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE2 GWGPTPRAGRAALQLKLRRRLTELLGAQDGALLVRLLQALRVARMPGLERSVRERFLPVH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 GWGPTPRAGRAALQLKLRRRLTELLGAQDGALLVRLLQALRVARMPGLERSVRERFLPVH 250 260 270 280 290 300 >>CCDS6326.1 TNFRSF11B gene_id:4982|Hs108|chr8 (401 aa) initn: 637 init1: 564 opt: 597 Z-score: 524.6 bits: 105.5 E(32554): 6.7e-23 Smith-Waterman score: 597; 37.7% identity (64.5% similar) in 231 aa overlap (10-236:3-227) 10 20 30 40 50 pF1KE2 MRALEGPGLSLLCLVLALPALLPVPAVRGVAET--PTYPWRDAETGERLVCAQCPPGTFV .::: .: ..: . . :: : : : ::...:.: .:::::.. CCDS63 MNNLLCCAL---VFLDISIKWTTQETFPPKYLHYDEETSHQLLCDKCPPGTYL 10 20 30 40 50 60 70 80 90 100 110 pF1KE2 QRPCRRDSPTTCGPCPPRHYTQFWNYLERCRYCNVLCGEREEEARACHATHNRACRCRTG .. : :.:.::: ..::. :. ..: ::. .: : . . :. ::::.:.:. : CCDS63 KQHCTAKWKTVCAPCPDHYYTDSWHTSDECLYCSPVCKELQYVKQECNRTHNRVCECKEG 60 70 80 90 100 110 120 130 140 150 160 170 pF1KE2 FFAHAGFCLEHASCPPGAGVIAPGTPSQNTQCQPCPPGTFSASSSSSEQCQPHRNCTALG . . :::.: ::::: ::. ::: .:: :. :: : :: .::. :. : ::...: CCDS63 RYLEIEFCLKHRSCPPGFGVVQAGTPERNTVCKRCPDGFFSNETSSKAPCRKHTNCSVFG 120 130 140 150 160 170 180 190 200 210 220 230 pF1KE2 LALNVPGSSSHDTLCTSCTGFPLSTRVPGAEE--CERAVIDFVAFQDISIKRLQRLLQAL : :. :...::..: .: ::. : . ::.: . :.. .. . :. :.. : CCDS63 LLLTQKGNATHDNIC---SGNSESTQKCGIDVTLCEEAFFRFAVPTKFTPNWLSVLVDNL 180 190 200 210 220 240 250 260 270 280 290 pF1KE2 EAPEGWGPTPRAGRAALQLKLRRRLTELLGAQDGALLVRLLQALRVARMPGLERSVRERF CCDS63 PGTKVNAESVERIKRQHSSQEQTFQLLKLWKHQNKDQDIVKKIIQDIDLCENSVQRHIGH 230 240 250 260 270 280 >>CCDS145.1 TNFRSF1B gene_id:7133|Hs108|chr1 (461 aa) initn: 446 init1: 234 opt: 472 Z-score: 416.5 bits: 85.7 E(32554): 7e-17 Smith-Waterman score: 472; 34.8% identity (58.1% similar) in 210 aa overlap (8-208:13-213) 10 20 30 40 50 pF1KE2 MRALEGPGLSLLCLVLALPALLPVPAVRGVAETPTYPWRDAETGER---LVCAQC :: : . :::: . : : : : : .. . :..: CCDS14 MAPVAVWAALAVGLELWAAAHALPAQV---AFTPYAPEPGSTCRLREYYDQTAQMCCSKC 10 20 30 40 50 60 70 80 90 100 110 pF1KE2 PPGTFVQRPCRRDSPTTCGPCPPRHYTQFWNYLERCRYCNVLCGEREEEARACHATHNRA :: .. : . : :.: : :::.::.. .: :. :. . :..:: .:: CCDS14 SPGQHAKVFCTKTSDTVCDSCEDSTYTQLWNWVPECLSCGSRCSSDQVETQACTREQNRI 60 70 80 90 100 110 120 130 140 150 160 pF1KE2 CRCRTGFFA----HAG--FCLEHASCPPGAGVIAPGTPSQNTQCQPCPPGTFSASSSSSE : :: :.. . : .: .: :: :: ::: .... :.:: ::::: ..::.. CCDS14 CTCRPGWYCALSKQEGCRLCAPLRKCRPGFGVARPGTETSDVVCKPCAPGTFSNTTSSTD 120 130 140 150 160 170 170 180 190 200 210 220 pF1KE2 QCQPHRNCTALGLALNVPGSSSHDTLCTSCTGFPLSTRVPGAEECERAVIDFVAFQDISI :.::. :.... .::..: :..::: . : . .::: CCDS14 ICRPHQICNVVA----IPGNASMDAVCTSTS--PTRSMAPGAVHLPQPVSTRSQHTQPTP 180 190 200 210 220 230 230 240 250 260 270 280 pF1KE2 KRLQRLLQALEAPEGWGPTPRAGRAALQLKLRRRLTELLGAQDGALLVRLLQALRVARMP CCDS14 EPSTAPSTSFLLPMGPSPPAEGSTGDFALPVGLIVGVTALGLLIIGVVNCVIMTQVKKKP 240 250 260 270 280 290 >>CCDS8544.1 LTBR gene_id:4055|Hs108|chr12 (435 aa) initn: 366 init1: 182 opt: 417 Z-score: 369.6 bits: 77.0 E(32554): 2.9e-14 Smith-Waterman score: 434; 31.8% identity (52.6% similar) in 274 aa overlap (3-249:6-276) 10 20 30 40 50 pF1KE2 MRALEGPGLSLLCLVLALPALLPVPAVRGVAETPTYPW--RDAET-----GERLVCA : .:::. :::.: .:: . ..: . :: : .:. :. CCDS85 MLLPWATSAPGLAWGPLVLGLFGLLAASQPQAVPPYASENQTCRDQEKEYYEPQHRICCS 10 20 30 40 50 60 60 70 80 90 100 pF1KE2 QCPPGTFVQRPCRRDSPTTCGPCPPRHYTQFWNYL---ERCRYCNVLCGEREEEARACHA .:::::.:. : : :.:. : :.. :::: . :: :. . : :: : . CCDS85 RCPPGTYVSAKCSRIRDTVCATCAENSYNEHWNYLTICQLCRPCDPVMGL--EEIAPCTS 70 80 90 100 110 110 120 130 140 150 160 pF1KE2 THNRACRCRTGFFAHA-----GFCLEHASCPPGAGV-IAPGTPSQNTQCQPCPPGTFSAS .. :::. :.: : : ..::::. . . . . :..: :: : :. . CCDS85 KRKTQCRCQPGMFCAAWALECTHCELLSDCPPGTEAELKDEVGKGNNHCVPCKAGHFQNT 120 130 140 150 160 170 170 180 190 200 210 220 pF1KE2 SSSSEQCQPHRNCTALGLALNVPGSSSHDTLCTSCTGFPLSTRVPGAEECERAVIDFVAF :: : .:::: : ::. .::... :: : . :: .. :. ... .. : CCDS85 SSPSARCQPHTRCENQGLVEAAPGTAQSDTTCKNPLE-PLPPEMSGTMLMLAVLLPLAFF 180 190 200 210 220 230 230 240 250 260 270 pF1KE2 QDI---------SIKRLQRLLQAL--EAPEGWGPTPRAGRAALQLKLRRRLTELLGAQDG . : : : : .: . :.: ::.: :: CCDS85 LLLATVFSCIWKSHPSLCRKLGSLLKRRPQGEGPNPVAGSWEPPKAHPYFPDLVQPLLPI 240 250 260 270 280 290 280 290 300 pF1KE2 ALLVRLLQALRVARMPGLERSVRERFLPVH CCDS85 SGDVSPVSTGLPAAPVLEAGVPQQQSPLDLTREPQLEPGEQSQVAHGTNGIHVTGGSMTI 300 310 320 330 340 350 >>CCDS4921.1 TNFRSF21 gene_id:27242|Hs108|chr6 (655 aa) initn: 408 init1: 408 opt: 412 Z-score: 363.2 bits: 76.4 E(32554): 6.5e-14 Smith-Waterman score: 412; 33.2% identity (54.3% similar) in 199 aa overlap (10-207:29-226) 10 20 30 40 pF1KE2 MRALEGPGLSLLCLVLALPALLPVPAVRGVAETPTYPWRDA ::: : . : . : .. :: : CCDS49 MGTSPSSSTALASCSRIARRATATMIAGSLLLLGF-LSTTTAQPEQKASNLIGTYRHVDR 10 20 30 40 50 50 60 70 80 90 100 pF1KE2 ETGERLVCAQCPPGTFVQRPCRRDSPTTCGPCPPRHYTQFWNYLERCRYCNVLCGEREEE ::. :.: .:: ::.:.. : : .:. :: .:. : .:.:. :. : : CCDS49 ATGQVLTCDKCPAGTYVSEHCTNTSLRVCSSCPVGTFTRHENGIEKCHDCSQPCPWPMIE 60 70 80 90 100 110 110 120 130 140 150 160 pF1KE2 ARACHATHNRACRCRTGFFAHAGFCLEHASCPPGAGVIAPGTPSQNTQCQPCPPGTFSAS : : .: : : :.: . : :. :: : :: :: .....:. : :::: CCDS49 KLPCAALTDRECTCPPGMFQSNATCAPHTVCPVGWGVRKKGTETEDVRCKQCARGTFSDV 120 130 140 150 160 170 170 180 190 200 210 220 pF1KE2 SSSSEQCQPHRNCTALGLALNVPGSSSHDTLCTSCTGFPLSTR-VPGAEECERAVIDFVA :: .:. . .: . .:.. ::.. :..: . .: :: :: CCDS49 PSSVMKCKAYTDCLSQNLVVIKPGTKETDNVCGTLPSFSSSTSPSPGTAIFPRPEHMETH 180 190 200 210 220 230 230 240 250 260 270 280 pF1KE2 FQDISIKRLQRLLQALEAPEGWGPTPRAGRAALQLKLRRRLTELLGAQDGALLVRLLQAL CCDS49 EVPSSTYVPKGMNSTESNSSASVRPKVLSSIQEGTVPDNTSSARGKEDVNKTLPNLQVVN 240 250 260 270 280 290 >>CCDS59233.1 LTBR gene_id:4055|Hs108|chr12 (416 aa) initn: 365 init1: 182 opt: 405 Z-score: 359.5 bits: 75.0 E(32554): 1.1e-13 Smith-Waterman score: 422; 31.0% identity (52.9% similar) in 255 aa overlap (16-249:6-257) 10 20 30 40 50 pF1KE2 MRALEGPGLSLLCLVLALPALLPVPAVRGVAETPTYPWRDA-ETGERLVCAQCPPGTFVQ ..: . : :: . .: .. : .:. :..:::::.:. CCDS59 MEATGISLASQLKVPPYASENQTCRDQEKEYYEPQHRICCSRCPPGTYVS 10 20 30 40 50 60 70 80 90 100 110 pF1KE2 RPCRRDSPTTCGPCPPRHYTQFWNYL---ERCRYCNVLCGEREEEARACHATHNRACRCR : : :.:. : :.. :::: . :: :. . : :: : . .. :::. CCDS59 AKCSRIRDTVCATCAENSYNEHWNYLTICQLCRPCDPVMG--LEEIAPCTSKRKTQCRCQ 60 70 80 90 100 120 130 140 150 160 170 pF1KE2 TGFFAHA-----GFCLEHASCPPGAGV-IAPGTPSQNTQCQPCPPGTFSASSSSSEQCQP :.: : : ..::::. . . . . :..: :: : :. .:: : .::: CCDS59 PGMFCAAWALECTHCELLSDCPPGTEAELKDEVGKGNNHCVPCKAGHFQNTSSPSARCQP 110 120 130 140 150 160 180 190 200 210 220 pF1KE2 HRNCTALGLALNVPGSSSHDTLCTSCTGFPLSTRVPGAEECERAVIDFVAFQDI------ : : ::. .::... :: : . :: .. :. ... .. : . CCDS59 HTRCENQGLVEAAPGTAQSDTTCKNPLE-PLPPEMSGTMLMLAVLLPLAFFLLLATVFSC 170 180 190 200 210 220 230 240 250 260 270 pF1KE2 ---SIKRLQRLLQAL--EAPEGWGPTPRAGRAALQLKLRRRLTELLGAQDGALLVRLLQA : : : : .: . :.: ::.: :: CCDS59 IWKSHPSLCRKLGSLLKRRPQGEGPNPVAGSWEPPKAHPYFPDLVQPLLPISGDVSPVST 230 240 250 260 270 280 >>CCDS44046.1 TNFRSF14 gene_id:8764|Hs108|chr1 (283 aa) initn: 272 init1: 145 opt: 353 Z-score: 316.8 bits: 66.6 E(32554): 2.5e-11 Smith-Waterman score: 353; 34.0% identity (52.9% similar) in 191 aa overlap (7-189:16-200) 10 20 30 40 50 pF1KE2 MRALEGPGLSLLCLVLALPALLPVPAVRGVAETPTYPWRDAETGERLVCAQ : ..: ::: : ..: .: . :. . .: . : . CCDS44 MEPPGDWGPPPWRSTPKTDVLRLVLYL-TFLGAPCY--APALPSCKEDEYPVGSE-CCPK 10 20 30 40 50 60 70 80 90 100 pF1KE2 CPPGTFVQRPCRRDSPTTCGPCPPRHYTQFWNYLERCRYCNVLCGERE--EEARACHATH : :: :.. : . . :.: :::: : : : .: :. .: . .: : :. CCDS44 CSPGYRVKEACGELTGTVCEPCPPGTYIAHLNGLSKCLQCQ-MCDPAMGLRASRNCSRTE 60 70 80 90 100 110 110 120 130 140 150 160 pF1KE2 NRACRCRTGFFA------HAGFCLEHASCPPGAGVIAPGTPSQNTQCQPCPPGTFSASSS : .: : : : : . : .:. :: : :: ::.: :: ::::::: ... CCDS44 NAVCGCSPGHFCIVQDGDHCAACRAYATSSPGQRVQKGGTESQDTLCQNCPPGTFSPNGT 120 130 140 150 160 170 170 180 190 200 210 220 pF1KE2 SSEQCQPHRNCTALGLALNVPGSSSHDTLCTSCTGFPLSTRVPGAEECERAVIDFVAFQD :.:: . .:. : .. :::: CCDS44 L-EECQHQTKCSWLVTKAGAGTSSSHWVWWFLSGSLVIVIVCSTVGLIICVKRRKPRGDV 180 190 200 210 220 230 >>CCDS74227.1 TNFRSF11A gene_id:8792|Hs108|chr18 (263 aa) initn: 300 init1: 168 opt: 342 Z-score: 307.7 bits: 64.8 E(32554): 8.1e-11 Smith-Waterman score: 342; 31.3% identity (55.4% similar) in 166 aa overlap (49-209:47-206) 20 30 40 50 60 70 pF1KE2 PALLPVPAVRGVAETPTYPWRDAETGERLVCAQCPPGTFVQRPCRRDSPTTCGPCPPRHY : .: :: ... : : ..: :: : .: CCDS74 LCALLARLQVALQIAPPCTSEKHYEHLGRCCNKCEPGKYMSSKCTTTSDSVCLPCGPDEY 20 30 40 50 60 70 80 90 100 110 120 130 pF1KE2 TQFWNYLERC---RYCNVLCGEREEEARACHATHNRACRCRTGFFAHAGF--CLEHASCP . :: ..: . :.. :. . : ..: : : : .:. : ... : CCDS74 LDSWNEEDKCLLHKVCDT--GKALVAVVAGNSTTPRRCACTAGYHWSQDCECCRRNTECA 80 90 100 110 120 130 140 150 160 170 180 190 pF1KE2 PGAGVIAPGTPSQNTQCQPCPPGTFSASSSSSEQCQPHRNCTALGLALNVPGSSSHDTLC :: :. : ...: :.:: : :: . ::...:.: ::: :: .. :. . :..: CCDS74 PGLGAQHPLQLNKDTVCKPCLAGYFSDAFSSTDKCRPWTNCTFLGKRVEHHGTEKSDAVC 140 150 160 170 180 190 200 210 220 230 240 250 pF1KE2 TSCTGFPLSTRVPGAEECERAVIDFVAFQDISIKRLQRLLQALEAPEGWGPTPRAGRAAL .: : .: : : CCDS74 SSS----LPARKPPNEPHVYLPGLIILLLFASVALVAAIIFGVCYRKKGKALTANLWHWI 200 210 220 230 240 250 >>CCDS74228.1 TNFRSF11A gene_id:8792|Hs108|chr18 (337 aa) initn: 300 init1: 168 opt: 342 Z-score: 306.5 bits: 64.9 E(32554): 9.5e-11 Smith-Waterman score: 342; 31.3% identity (55.4% similar) in 166 aa overlap (49-209:47-206) 20 30 40 50 60 70 pF1KE2 PALLPVPAVRGVAETPTYPWRDAETGERLVCAQCPPGTFVQRPCRRDSPTTCGPCPPRHY : .: :: ... : : ..: :: : .: CCDS74 LCALLARLQVALQIAPPCTSEKHYEHLGRCCNKCEPGKYMSSKCTTTSDSVCLPCGPDEY 20 30 40 50 60 70 80 90 100 110 120 130 pF1KE2 TQFWNYLERC---RYCNVLCGEREEEARACHATHNRACRCRTGFFAHAGF--CLEHASCP . :: ..: . :.. :. . : ..: : : : .:. : ... : CCDS74 LDSWNEEDKCLLHKVCDT--GKALVAVVAGNSTTPRRCACTAGYHWSQDCECCRRNTECA 80 90 100 110 120 130 140 150 160 170 180 190 pF1KE2 PGAGVIAPGTPSQNTQCQPCPPGTFSASSSSSEQCQPHRNCTALGLALNVPGSSSHDTLC :: :. : ...: :.:: : :: . ::...:.: ::: :: .. :. . :..: CCDS74 PGLGAQHPLQLNKDTVCKPCLAGYFSDAFSSTDKCRPWTNCTFLGKRVEHHGTEKSDAVC 140 150 160 170 180 190 200 210 220 230 240 250 pF1KE2 TSCTGFPLSTRVPGAEECERAVIDFVAFQDISIKRLQRLLQALEAPEGWGPTPRAGRAAL .: : .: : : CCDS74 SSS----LPARKPPNEPHVYLPGLIILLLFASVALVAAIIFGVCYRKKGKALTGNVTGNS 200 210 220 230 240 250 300 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 13:00:33 2016 done: Sun Nov 6 13:00:33 2016 Total Scan time: 2.770 Total Display time: 0.010 Function used was FASTA [36.3.4 Apr, 2011]