FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB6958, 238 aa 1>>>pF1KB6958 238 - 238 aa - 238 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.4718+/-0.000672; mu= 11.1419+/- 0.041 mean_var=121.8645+/-24.290, 0's: 0 Z-trim(115.3): 10 B-trim: 365 in 1/49 Lambda= 0.116181 statistics sampled from 15884 (15892) to 15884 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.815), E-opt: 0.2 (0.488), width: 16 Scan time: 2.630 The best scores are: opt bits E(32554) CCDS13477.1 EDN3 gene_id:1908|Hs108|chr20 ( 238) 1679 291.3 3.8e-79 CCDS13479.1 EDN3 gene_id:1908|Hs108|chr20 ( 219) 1388 242.5 1.7e-64 CCDS13478.1 EDN3 gene_id:1908|Hs108|chr20 ( 224) 1293 226.6 1.1e-59 CCDS77597.1 EDN3 gene_id:1908|Hs108|chr20 ( 192) 1291 226.2 1.2e-59 >>CCDS13477.1 EDN3 gene_id:1908|Hs108|chr20 (238 aa) initn: 1679 init1: 1679 opt: 1679 Z-score: 1534.4 bits: 291.3 E(32554): 3.8e-79 Smith-Waterman score: 1679; 100.0% identity (100.0% similar) in 238 aa overlap (1-238:1-238) 10 20 30 40 50 60 pF1KB6 MEPGLWLLFGLTVTSAAGFVPCSQSGDAGRRGVSQAPTAARSEGDCEETVAGPGEETVAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 MEPGLWLLFGLTVTSAAGFVPCSQSGDAGRRGVSQAPTAARSEGDCEETVAGPGEETVAG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB6 PGEGTVAPTALQGPSPGSPGQEQAAEGAPEHHRSRRCTCFTYKDKECVYYCHLDIIWINT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 PGEGTVAPTALQGPSPGSPGQEQAAEGAPEHHRSRRCTCFTYKDKECVYYCHLDIIWINT 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB6 PEQTVPYGLSNYRGSFRGKRSAGPLPGNLQLSHRPHLRCACVGRYDKACLHFCTQTLDVS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 PEQTVPYGLSNYRGSFRGKRSAGPLPGNLQLSHRPHLRCACVGRYDKACLHFCTQTLDVS 130 140 150 160 170 180 190 200 210 220 230 pF1KB6 SNSRTAEKTDKEEEGKVEVKDQQSKQALDLHHPKLMPGSGLALAPSTCPRCLFQEGAP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 SNSRTAEKTDKEEEGKVEVKDQQSKQALDLHHPKLMPGSGLALAPSTCPRCLFQEGAP 190 200 210 220 230 >>CCDS13479.1 EDN3 gene_id:1908|Hs108|chr20 (219 aa) initn: 1388 init1: 1388 opt: 1388 Z-score: 1271.2 bits: 242.5 E(32554): 1.7e-64 Smith-Waterman score: 1388; 100.0% identity (100.0% similar) in 197 aa overlap (1-197:1-197) 10 20 30 40 50 60 pF1KB6 MEPGLWLLFGLTVTSAAGFVPCSQSGDAGRRGVSQAPTAARSEGDCEETVAGPGEETVAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 MEPGLWLLFGLTVTSAAGFVPCSQSGDAGRRGVSQAPTAARSEGDCEETVAGPGEETVAG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB6 PGEGTVAPTALQGPSPGSPGQEQAAEGAPEHHRSRRCTCFTYKDKECVYYCHLDIIWINT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 PGEGTVAPTALQGPSPGSPGQEQAAEGAPEHHRSRRCTCFTYKDKECVYYCHLDIIWINT 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB6 PEQTVPYGLSNYRGSFRGKRSAGPLPGNLQLSHRPHLRCACVGRYDKACLHFCTQTLDVS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 PEQTVPYGLSNYRGSFRGKRSAGPLPGNLQLSHRPHLRCACVGRYDKACLHFCTQTLDVS 130 140 150 160 170 180 190 200 210 220 230 pF1KB6 SNSRTAEKTDKEEEGKVEVKDQQSKQALDLHHPKLMPGSGLALAPSTCPRCLFQEGAP ::::::::::::::::: CCDS13 SNSRTAEKTDKEEEGKVRGANRGLCQRRLKSRTNKASRL 190 200 210 >>CCDS13478.1 EDN3 gene_id:1908|Hs108|chr20 (224 aa) initn: 1374 init1: 1293 opt: 1293 Z-score: 1185.0 bits: 226.6 E(32554): 1.1e-59 Smith-Waterman score: 1545; 93.3% identity (93.7% similar) in 238 aa overlap (1-238:1-224) 10 20 30 40 50 60 pF1KB6 MEPGLWLLFGLTVTSAAGFVPCSQSGDAGRRGVSQAPTAARSEGDCEETVAGPGEETVAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 MEPGLWLLFGLTVTSAAGFVPCSQSGDAGRRGVSQAPTAARSEGDCEETVAGPGEETVAG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB6 PGEGTVAPTALQGPSPGSPGQEQAAEGAPEHHRSRRCTCFTYKDKECVYYCHLDIIWINT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 PGEGTVAPTALQGPSPGSPGQEQAAEGAPEHHRSRRCTCFTYKDKECVYYCHLDIIWINT 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB6 PEQTVPYGLSNYRGSFRGKRSAGPLPGNLQLSHRPHLRCACVGRYDKACLHFCTQTLDVS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 PEQTVPYGLSNYRGSFRGKRSAGPLPGNLQLSHRPHLRCACVGRYDKACLHFCTQTLDVS 130 140 150 160 170 180 190 200 210 220 230 pF1KB6 SNSRTAEKTDKEEEGKVEVKDQQSKQALDLHHPKLMPGSGLALAPSTCPRCLFQEGAP .:::::::::::::::::::::::::::::::::::::::::: CCDS13 R--------------QVEVKDQQSKQALDLHHPKLMPGSGLALAPSTCPRCLFQEGAP 190 200 210 220 >>CCDS77597.1 EDN3 gene_id:1908|Hs108|chr20 (192 aa) initn: 1286 init1: 1286 opt: 1291 Z-score: 1184.1 bits: 226.2 E(32554): 1.2e-59 Smith-Waterman score: 1291; 96.3% identity (97.9% similar) in 190 aa overlap (1-189:1-190) 10 20 30 40 50 60 pF1KB6 MEPGLWLLFGLTVTSAAGFVPCSQSGDAGRRGVSQAPTAARSEGDCEETVAGPGEETVAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS77 MEPGLWLLFGLTVTSAAGFVPCSQSGDAGRRGVSQAPTAARSEGDCEETVAGPGEETVAG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB6 PGEGTVAPTALQGPSPGSPGQEQAAEGAPEHHRSRRCTCFTYKDKECVYYCHLDIIWINT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS77 PGEGTVAPTALQGPSPGSPGQEQAAEGAPEHHRSRRCTCFTYKDKECVYYCHLDIIWINT 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB6 PEQTVPYGLSNYRGSFRGKRSAGPLPGNLQLSHRPHLRCACVGRYDKACLHFCTQTLDVS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS77 PEQTVPYGLSNYRGSFRGKRSAGPLPGNLQLSHRPHLRCACVGRYDKACLHFCTQTLDVS 130 140 150 160 170 180 190 200 210 220 230 pF1KB6 S-NSRTAEKTDKEEEGKVEVKDQQSKQALDLHHPKLMPGSGLALAPSTCPRCLFQEGAP .::: . . CCDS77 RLKSRTNKASRL 190 238 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 13:02:19 2016 done: Sun Nov 6 13:02:20 2016 Total Scan time: 2.630 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]