FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2529, 192 aa
  1>>>pF1KE2529 192 - 192 aa - 192 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3424+/-0.000639; mu= 14.7417+/- 0.039
 mean_var=81.5141+/-16.244, 0's: 0 Z-trim(113.0): 5  B-trim: 4 in 1/49
 Lambda= 0.142055
 statistics sampled from 13724 (13726) to 13724 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.775), E-opt: 0.2 (0.422), width:  16
 Scan time:  2.020

The best scores are:                                      opt bits E(32554)
CCDS13450.1 FAM210B gene_id:116151|Hs108|chr20     ( 192) 1245 263.6 5.3e-71


>>CCDS13450.1 FAM210B gene_id:116151|Hs108|chr20          (192 aa)
 initn: 1245 init1: 1245 opt: 1245  Z-score: 1388.3  bits: 263.6 E(32554): 5.3e-71
Smith-Waterman score: 1245; 100.0% identity (100.0% similar) in 192 aa overlap (1-192:1-192)

               10        20        30        40        50        60
pF1KE2 MAGLLALLGPAGRVGARVRPRATWLLGATAPCAPPPLALALLPPRLDARLLRTARGDCRG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MAGLLALLGPAGRVGARVRPRATWLLGATAPCAPPPLALALLPPRLDARLLRTARGDCRG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 HQDPSQATGTTGSSVSCTEEKKQSKSQQLKKIFQEYGTVGVSLHIGISLISLGIFYMVVS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 HQDPSQATGTTGSSVSCTEEKKQSKSQQLKKIFQEYGTVGVSLHIGISLISLGIFYMVVS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 SGVDMPAILLKLGFKESLVQSKMAAGTSTFVVAYAIHKLFAPVRISITLVSVPLIVRYFR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 SGVDMPAILLKLGFKESLVQSKMAAGTSTFVVAYAIHKLFAPVRISITLVSVPLIVRYFR
              130       140       150       160       170       180

              190  
pF1KE2 KVGFFKPPAAKP
       ::::::::::::
CCDS13 KVGFFKPPAAKP
              190  




192 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 03:28:43 2016 done: Tue Nov  8 03:28:44 2016
 Total Scan time:  2.020 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]