FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5073, 129 aa 1>>>pF1KE5073 129 - 129 aa - 129 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.0920+/-0.000656; mu= 12.5212+/- 0.039 mean_var=76.4321+/-15.691, 0's: 0 Z-trim(111.4): 41 B-trim: 0 in 0/51 Lambda= 0.146702 statistics sampled from 12322 (12362) to 12322 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.744), E-opt: 0.2 (0.38), width: 16 Scan time: 1.450 The best scores are: opt bits E(32554) CCDS13326.1 JPH2 gene_id:57158|Hs108|chr20 ( 129) 973 214.3 1.7e-56 CCDS13325.1 JPH2 gene_id:57158|Hs108|chr20 ( 696) 953 210.7 1.1e-54 CCDS6217.1 JPH1 gene_id:56704|Hs108|chr8 ( 661) 830 184.6 7.3e-47 CCDS10962.1 JPH3 gene_id:57338|Hs108|chr16 ( 748) 824 183.4 1.9e-46 CCDS9603.1 JPH4 gene_id:84502|Hs108|chr14 ( 628) 634 143.1 2.2e-34 >>CCDS13326.1 JPH2 gene_id:57158|Hs108|chr20 (129 aa) initn: 973 init1: 973 opt: 973 Z-score: 1127.9 bits: 214.3 E(32554): 1.7e-56 Smith-Waterman score: 973; 100.0% identity (100.0% similar) in 129 aa overlap (1-129:1-129) 10 20 30 40 50 60 pF1KE5 MSGGRFDFDDGGAYCGGWEGGKAHGHGLCTGPKGQGEYSGSWNFGFEVAGVYTWPSGNTF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 MSGGRFDFDDGGAYCGGWEGGKAHGHGLCTGPKGQGEYSGSWNFGFEVAGVYTWPSGNTF 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 EGYWSQGKRHGLGIETKGRWLYKGEWTHGFKGRYGIRQSSSSGAKYEGTWNNGLQDGYGT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 EGYWSQGKRHGLGIETKGRWLYKGEWTHGFKGRYGIRQSSSSGAKYEGTWNNGLQDGYGT 70 80 90 100 110 120 pF1KE5 ETYADGGMC ::::::::: CCDS13 ETYADGGMC >>CCDS13325.1 JPH2 gene_id:57158|Hs108|chr20 (696 aa) initn: 953 init1: 953 opt: 953 Z-score: 1095.2 bits: 210.7 E(32554): 1.1e-54 Smith-Waterman score: 953; 100.0% identity (100.0% similar) in 127 aa overlap (1-127:1-127) 10 20 30 40 50 60 pF1KE5 MSGGRFDFDDGGAYCGGWEGGKAHGHGLCTGPKGQGEYSGSWNFGFEVAGVYTWPSGNTF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 MSGGRFDFDDGGAYCGGWEGGKAHGHGLCTGPKGQGEYSGSWNFGFEVAGVYTWPSGNTF 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 EGYWSQGKRHGLGIETKGRWLYKGEWTHGFKGRYGIRQSSSSGAKYEGTWNNGLQDGYGT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 EGYWSQGKRHGLGIETKGRWLYKGEWTHGFKGRYGIRQSSSSGAKYEGTWNNGLQDGYGT 70 80 90 100 110 120 pF1KE5 ETYADGGMC ::::::: CCDS13 ETYADGGTYQGQFTNGMRHGYGVRQSVPYGMAVVVRSPLRTSLSSLRSEHSNGTVAPDSP 130 140 150 160 170 180 >>CCDS6217.1 JPH1 gene_id:56704|Hs108|chr8 (661 aa) initn: 830 init1: 830 opt: 830 Z-score: 954.8 bits: 184.6 E(32554): 7.3e-47 Smith-Waterman score: 830; 80.3% identity (95.3% similar) in 127 aa overlap (1-127:1-127) 10 20 30 40 50 60 pF1KE5 MSGGRFDFDDGGAYCGGWEGGKAHGHGLCTGPKGQGEYSGSWNFGFEVAGVYTWPSGNTF :.::::::::::.:::::: :::::::.::::::::::::::. ::::.: ::::::::. CCDS62 MTGGRFDFDDGGTYCGGWEEGKAHGHGICTGPKGQGEYSGSWSHGFEVVGGYTWPSGNTY 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 EGYWSQGKRHGLGIETKGRWLYKGEWTHGFKGRYGIRQSSSSGAKYEGTWNNGLQDGYGT .:::.::::::::.::::.:.:.:::.::::::::.::: . :.:::::.::::::::. CCDS62 QGYWAQGKRHGLGVETKGKWMYRGEWSHGFKGRYGVRQSLCTPARYEGTWSNGLQDGYGV 70 80 90 100 110 120 pF1KE5 ETYADGGMC :::.::: CCDS62 ETYGDGGTYQGQWAGGMRHGYGVRQSVPYGMATVIRSPLRTSLASLRSEQSNGSVLHDAA 130 140 150 160 170 180 >>CCDS10962.1 JPH3 gene_id:57338|Hs108|chr16 (748 aa) initn: 824 init1: 824 opt: 824 Z-score: 947.2 bits: 183.4 E(32554): 1.9e-46 Smith-Waterman score: 824; 80.2% identity (96.0% similar) in 126 aa overlap (2-127:3-128) 10 20 30 40 50 pF1KE5 MSGGRFDFDDGGAYCGGWEGGKAHGHGLCTGPKGQGEYSGSWNFGFEVAGVYTWPSGNT :::::.:::::.:::::: :::::::.::::::::::.:::. :::: :::::::::: CCDS10 MSSGGRFNFDDGGSYCGGWEDGKAHGHGVCTGPKGQGEYTGSWSHGFEVLGVYTWPSGNT 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE5 FEGYWSQGKRHGLGIETKGRWLYKGEWTHGFKGRYGIRQSSSSGAKYEGTWNNGLQDGYG ..: :.::::::.:.:.::.:.::::::::::::::.:. ...::::::::.:::::::: CCDS10 YQGTWAQGKRHGIGLESKGKWVYKGEWTHGFKGRYGVRECAGNGAKYEGTWSNGLQDGYG 70 80 90 100 110 120 120 pF1KE5 TETYADGGMC ::::.::: CCDS10 TETYSDGGTYQGQWVGGMRQGYGVRQSVPYGMAAVIRSPLRTSINSLRSEHTNGTALHPD 130 140 150 160 170 180 >>CCDS9603.1 JPH4 gene_id:84502|Hs108|chr14 (628 aa) initn: 630 init1: 509 opt: 634 Z-score: 730.9 bits: 143.1 E(32554): 2.2e-34 Smith-Waterman score: 634; 63.2% identity (84.0% similar) in 125 aa overlap (3-127:4-127) 10 20 30 40 50 pF1KE5 MSGGRFDFDDGGAYCGGWEGGKAHGHGLCTGPKGQGEYSGSWNFGFEVAGVYTWPSGNT ::.::::::: : ::::.:.:::.:.:::: .:::::: : ::: ::.: :.:.. CCDS96 MSPGGKFDFDDGGCYVGGWEAGRAHGYGVCTGPGAQGEYSGCWAHGFESLGVFTGPGGHS 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE5 FEGYWSQGKRHGLGIETKGRWLYKGEWTHGFKGRYGIRQSSSSGAKYEGTWNNGLQDGYG ..:.:.::::.:::.: :.:: :.::: :.::: :. .: : : .: : :..:.::::: CCDS96 YQGHWQQGKREGLGVERKSRWTYRGEWLGGLKGRSGVWESVS-GLRYAGLWKDGFQDGYG 70 80 90 100 110 120 pF1KE5 TETYADGGMC ::::.::: CCDS96 TETYSDGGTYQGQWQAGKRHGYGVRQSVPYHQAALLRSPRRTSLDSGHSDPPTPPPPLPL 120 130 140 150 160 170 129 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 04:46:36 2016 done: Tue Nov 8 04:46:36 2016 Total Scan time: 1.450 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]