FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE4162, 607 aa 1>>>pF1KE4162 607 - 607 aa - 607 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 7.2158+/-0.000911; mu= 11.5864+/- 0.055 mean_var=140.3590+/-28.658, 0's: 0 Z-trim(111.2): 40 B-trim: 695 in 2/49 Lambda= 0.108257 statistics sampled from 12192 (12228) to 12192 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.717), E-opt: 0.2 (0.376), width: 16 Scan time: 3.060 The best scores are: opt bits E(32554) CCDS13308.1 ACTR5 gene_id:79913|Hs108|chr20 ( 607) 4086 649.9 2.8e-186 >>CCDS13308.1 ACTR5 gene_id:79913|Hs108|chr20 (607 aa) initn: 4086 init1: 4086 opt: 4086 Z-score: 3457.7 bits: 649.9 E(32554): 2.8e-186 Smith-Waterman score: 4086; 100.0% identity (100.0% similar) in 607 aa overlap (1-607:1-607) 10 20 30 40 50 60 pF1KE4 MAANVFPFRDARAAPDPVLEAGPVAHGPLPVPLVLDNGSFQVRAGWACPGQDPGPEPRLQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 MAANVFPFRDARAAPDPVLEAGPVAHGPLPVPLVLDNGSFQVRAGWACPGQDPGPEPRLQ 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE4 FRAVCARGRGGARGASGPQVGNALGSLEPLRWMLRSPFDRNVPVNLELQELLLDYSFQHL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 FRAVCARGRGGARGASGPQVGNALGSLEPLRWMLRSPFDRNVPVNLELQELLLDYSFQHL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE4 GVSSQGCVDHPIVLTEAVCNPLYSRQMMSELLFECYGIPKVAYGIDSLFSFYHNKPKNSM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 GVSSQGCVDHPIVLTEAVCNPLYSRQMMSELLFECYGIPKVAYGIDSLFSFYHNKPKNSM 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE4 CSGLIISSGYQCTHVLPILEGRLDAKNCKRINLGGSQAAGYLQRLLQLKYPGHLAAITLS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 CSGLIISSGYQCTHVLPILEGRLDAKNCKRINLGGSQAAGYLQRLLQLKYPGHLAAITLS 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE4 RMEEILHEHSYIAEDYVEELHKWRCPDYYENNVHKMQLPFSSKLLGSTLTSEEKQERRQQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 RMEEILHEHSYIAEDYVEELHKWRCPDYYENNVHKMQLPFSSKLLGSTLTSEEKQERRQQ 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE4 QLRRLQELNARRREEKLQLDQERLDRLLYVQELLEDGQMDQFHKALIELNMDSPEELQSY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 QLRRLQELNARRREEKLQLDQERLDRLLYVQELLEDGQMDQFHKALIELNMDSPEELQSY 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE4 IQKLSIAVEQAKQKILQAEVNLEVDVVDSKPETPDLEQLEPSLEDVESMNDFDPLFSEET :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 IQKLSIAVEQAKQKILQAEVNLEVDVVDSKPETPDLEQLEPSLEDVESMNDFDPLFSEET 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE4 PGVEKPVTTVQPVFNLAAYHQLFVGTERIRAPEIIFQPSLIGEEQAGIAETLQYILDRYP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 PGVEKPVTTVQPVFNLAAYHQLFVGTERIRAPEIIFQPSLIGEEQAGIAETLQYILDRYP 430 440 450 460 470 480 490 500 510 520 530 540 pF1KE4 KDIQEMLVQNVFLTGGNTMYPGMKARMEKELLEMRPFRSSFQVQLASNPVLDAWYGARDW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 KDIQEMLVQNVFLTGGNTMYPGMKARMEKELLEMRPFRSSFQVQLASNPVLDAWYGARDW 490 500 510 520 530 540 550 560 570 580 590 600 pF1KE4 ALNHLDDNEVWITRKEYEEKGGEYLKEHCASNIYVPIRLPKQASRSSDAQASSKGSAAGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 ALNHLDDNEVWITRKEYEEKGGEYLKEHCASNIYVPIRLPKQASRSSDAQASSKGSAAGG 550 560 570 580 590 600 pF1KE4 GGAGEQA ::::::: CCDS13 GGAGEQA 607 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sat Nov 5 22:38:21 2016 done: Sat Nov 5 22:38:21 2016 Total Scan time: 3.060 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]