FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1966, 524 aa 1>>>pF1KE1966 524 - 524 aa - 524 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 9.3223+/-0.000709; mu= 2.2797+/- 0.045 mean_var=505.1159+/-107.586, 0's: 0 Z-trim(115.8): 234 B-trim: 2860 in 2/53 Lambda= 0.057066 statistics sampled from 26293 (26552) to 26293 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.645), E-opt: 0.2 (0.311), width: 16 Scan time: 9.440 The best scores are: opt bits E(85289) NP_004893 (OMIM: 604739) RNA-binding protein 39 is ( 524) 3400 295.5 2.6e-79 NP_909122 (OMIM: 604739) RNA-binding protein 39 is ( 530) 3378 293.7 9.1e-79 NP_001310353 (OMIM: 604739) RNA-binding protein 39 ( 529) 3361 292.3 2.4e-78 NP_001229529 (OMIM: 604739) RNA-binding protein 39 ( 502) 2800 246.1 1.9e-64 NP_001229528 (OMIM: 604739) RNA-binding protein 39 ( 508) 2778 244.3 6.6e-64 XP_016883631 (OMIM: 604739) PREDICTED: RNA-binding ( 367) 2371 210.6 6.8e-54 XP_016883634 (OMIM: 604739) PREDICTED: RNA-binding ( 367) 2371 210.6 6.8e-54 XP_016883632 (OMIM: 604739) PREDICTED: RNA-binding ( 367) 2371 210.6 6.8e-54 XP_016883630 (OMIM: 604739) PREDICTED: RNA-binding ( 367) 2371 210.6 6.8e-54 XP_016883633 (OMIM: 604739) PREDICTED: RNA-binding ( 367) 2371 210.6 6.8e-54 NP_001310351 (OMIM: 604739) RNA-binding protein 39 ( 498) 2359 209.8 1.6e-53 XP_016883629 (OMIM: 604739) PREDICTED: RNA-binding ( 373) 2349 208.8 2.4e-53 XP_011527413 (OMIM: 604739) PREDICTED: RNA-binding ( 373) 2349 208.8 2.4e-53 NP_001310352 (OMIM: 604739) RNA-binding protein 39 ( 373) 2349 208.8 2.4e-53 XP_006723954 (OMIM: 604739) PREDICTED: RNA-binding ( 373) 2349 208.8 2.4e-53 XP_016883628 (OMIM: 604739) PREDICTED: RNA-binding ( 373) 2349 208.8 2.4e-53 XP_006723953 (OMIM: 604739) PREDICTED: RNA-binding ( 373) 2349 208.8 2.4e-53 XP_016883627 (OMIM: 604739) PREDICTED: RNA-binding ( 476) 1759 160.3 1.1e-38 XP_016883636 (OMIM: 604739) PREDICTED: RNA-binding ( 341) 1330 124.8 4.1e-28 XP_016883635 (OMIM: 604739) PREDICTED: RNA-binding ( 341) 1330 124.8 4.1e-28 NP_001161086 (OMIM: 155950,166700,607844) inner nu ( 910) 331 43.2 0.004 NP_055134 (OMIM: 155950,166700,607844) inner nucle ( 911) 331 43.2 0.004 >>NP_004893 (OMIM: 604739) RNA-binding protein 39 isofor (524 aa) initn: 3400 init1: 3400 opt: 3400 Z-score: 1544.9 bits: 295.5 E(85289): 2.6e-79 Smith-Waterman score: 3400; 100.0% identity (100.0% similar) in 524 aa overlap (1-524:1-524) 10 20 30 40 50 60 pF1KE1 MADDIDIEAMLEAPYKKDENKLSSANGHEERSKKRKKSKSRSRSHERKRSKSKERKRSRD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 MADDIDIEAMLEAPYKKDENKLSSANGHEERSKKRKKSKSRSRSHERKRSKSKERKRSRD 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 RERKKSKSRERKRSRSKERRRSRSRSRDRRFRGRYRSPYSGPKFNSAIRGKIGLPHSIKL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 RERKKSKSRERKRSRSKERRRSRSRSRDRRFRGRYRSPYSGPKFNSAIRGKIGLPHSIKL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 SRRRSRSKSPFRKDKSPVREPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 SRRRSRSKSPFRKDKSPVREPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVR 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 DVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKNRAAAMAN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 DVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKNRAAAMAN 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE1 NLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 NLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSD 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE1 SECAKKALEQLNGFELAGRPMKVGHVTERTDASSASSFLDSDELERTGIDLGTTGRLQLM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 SECAKKALEQLNGFELAGRPMKVGHVTERTDASSASSFLDSDELERTGIDLGTTGRLQLM 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE1 ARLAEGTGLQIPPAAQQALQMSGSLAFGAVADLQTRLSQQTEASALAAAASVQPLATQCF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 ARLAEGTGLQIPPAAQQALQMSGSLAFGAVADLQTRLSQQTEASALAAAASVQPLATQCF 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE1 QLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 QLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIA 430 440 450 460 470 480 490 500 510 520 pF1KE1 AVNALHGRWFAGKMITAAYVPLPTYHNLFPDSMTATQLLVPSRR :::::::::::::::::::::::::::::::::::::::::::: NP_004 AVNALHGRWFAGKMITAAYVPLPTYHNLFPDSMTATQLLVPSRR 490 500 510 520 >>NP_909122 (OMIM: 604739) RNA-binding protein 39 isofor (530 aa) initn: 2726 init1: 2538 opt: 3378 Z-score: 1535.1 bits: 293.7 E(85289): 9.1e-79 Smith-Waterman score: 3378; 98.9% identity (98.9% similar) in 530 aa overlap (1-524:1-530) 10 20 30 40 50 60 pF1KE1 MADDIDIEAMLEAPYKKDENKLSSANGHEERSKKRKKSKSRSRSHERKRSKSKERKRSRD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_909 MADDIDIEAMLEAPYKKDENKLSSANGHEERSKKRKKSKSRSRSHERKRSKSKERKRSRD 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 RERKKSKSRERKRSRSKERRRSRSRSRDRRFRGRYRSPYSGPKFNSAIRGKIGLPHSIKL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_909 RERKKSKSRERKRSRSKERRRSRSRSRDRRFRGRYRSPYSGPKFNSAIRGKIGLPHSIKL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 SRRRSRSKSPFRKDKSPVREPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_909 SRRRSRSKSPFRKDKSPVREPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVR 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 DVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKNRAAAMAN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_909 DVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKNRAAAMAN 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE1 NLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_909 NLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSD 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE1 SECAKKALEQLNGFELAGRPMKVGHVTERTDASSASSFLDSDELERTGIDLGTTGRLQLM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_909 SECAKKALEQLNGFELAGRPMKVGHVTERTDASSASSFLDSDELERTGIDLGTTGRLQLM 310 320 330 340 350 360 370 380 390 400 410 pF1KE1 ARLAEGTGLQIPPAAQQALQMSGSLAFGAVA------DLQTRLSQQTEASALAAAASVQP ::::::::::::::::::::::::::::::: ::::::::::::::::::::::: NP_909 ARLAEGTGLQIPPAAQQALQMSGSLAFGAVAEFSFVIDLQTRLSQQTEASALAAAASVQP 370 380 390 400 410 420 420 430 440 450 460 470 pF1KE1 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_909 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPS 430 440 450 460 470 480 480 490 500 510 520 pF1KE1 IAAAIAAVNALHGRWFAGKMITAAYVPLPTYHNLFPDSMTATQLLVPSRR :::::::::::::::::::::::::::::::::::::::::::::::::: NP_909 IAAAIAAVNALHGRWFAGKMITAAYVPLPTYHNLFPDSMTATQLLVPSRR 490 500 510 520 530 >>NP_001310353 (OMIM: 604739) RNA-binding protein 39 iso (529 aa) initn: 2532 init1: 1756 opt: 3361 Z-score: 1527.5 bits: 292.3 E(85289): 2.4e-78 Smith-Waterman score: 3361; 98.7% identity (98.7% similar) in 530 aa overlap (1-524:1-529) 10 20 30 40 50 60 pF1KE1 MADDIDIEAMLEAPYKKDENKLSSANGHEERSKKRKKSKSRSRSHERKRSKSKERKRSRD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MADDIDIEAMLEAPYKKDENKLSSANGHEERSKKRKKSKSRSRSHERKRSKSKERKRSRD 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 RERKKSKSRERKRSRSKERRRSRSRSRDRRFRGRYRSPYSGPKFNSAIRGKIGLPHSIKL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 RERKKSKSRERKRSRSKERRRSRSRSRDRRFRGRYRSPYSGPKFNSAIRGKIGLPHSIKL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 SRRRSRSKSPFRKDKSPVREPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVR ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 -RRRSRSKSPFRKDKSPVREPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVR 130 140 150 160 170 190 200 210 220 230 240 pF1KE1 DVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKNRAAAMAN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 DVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKNRAAAMAN 180 190 200 210 220 230 250 260 270 280 290 300 pF1KE1 NLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 NLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSD 240 250 260 270 280 290 310 320 330 340 350 360 pF1KE1 SECAKKALEQLNGFELAGRPMKVGHVTERTDASSASSFLDSDELERTGIDLGTTGRLQLM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 SECAKKALEQLNGFELAGRPMKVGHVTERTDASSASSFLDSDELERTGIDLGTTGRLQLM 300 310 320 330 340 350 370 380 390 400 410 pF1KE1 ARLAEGTGLQIPPAAQQALQMSGSLAFGAVA------DLQTRLSQQTEASALAAAASVQP ::::::::::::::::::::::::::::::: ::::::::::::::::::::::: NP_001 ARLAEGTGLQIPPAAQQALQMSGSLAFGAVAEFSFVIDLQTRLSQQTEASALAAAASVQP 360 370 380 390 400 410 420 430 440 450 460 470 pF1KE1 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPS 420 430 440 450 460 470 480 490 500 510 520 pF1KE1 IAAAIAAVNALHGRWFAGKMITAAYVPLPTYHNLFPDSMTATQLLVPSRR :::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 IAAAIAAVNALHGRWFAGKMITAAYVPLPTYHNLFPDSMTATQLLVPSRR 480 490 500 510 520 >>NP_001229529 (OMIM: 604739) RNA-binding protein 39 iso (502 aa) initn: 3242 init1: 2618 opt: 2800 Z-score: 1278.1 bits: 246.1 E(85289): 1.9e-64 Smith-Waterman score: 3202; 95.8% identity (95.8% similar) in 524 aa overlap (1-524:1-502) 10 20 30 40 50 60 pF1KE1 MADDIDIEAMLEAPYKKDENKLSSANGHEERSKKRKKSKSRSRSHERKRSKSKERKRSRD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MADDIDIEAMLEAPYKKDENKLSSANGHEERSKKRKKSKSRSRSHERKRSKSKERKRSRD 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 RERKKSKSRERKRSRSKERRRSRSRSRDRRFRGRYRSPYSGPKFNSAIRGKIGLPHSIKL ::::::::::::::::::::::::::::::::::::::: NP_001 RERKKSKSRERKRSRSKERRRSRSRSRDRRFRGRYRSPY--------------------- 70 80 90 130 140 150 160 170 180 pF1KE1 SRRRSRSKSPFRKDKSPVREPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVR ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 -RRRSRSKSPFRKDKSPVREPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVR 100 110 120 130 140 150 190 200 210 220 230 240 pF1KE1 DVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKNRAAAMAN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 DVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKNRAAAMAN 160 170 180 190 200 210 250 260 270 280 290 300 pF1KE1 NLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 NLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSD 220 230 240 250 260 270 310 320 330 340 350 360 pF1KE1 SECAKKALEQLNGFELAGRPMKVGHVTERTDASSASSFLDSDELERTGIDLGTTGRLQLM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 SECAKKALEQLNGFELAGRPMKVGHVTERTDASSASSFLDSDELERTGIDLGTTGRLQLM 280 290 300 310 320 330 370 380 390 400 410 420 pF1KE1 ARLAEGTGLQIPPAAQQALQMSGSLAFGAVADLQTRLSQQTEASALAAAASVQPLATQCF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 ARLAEGTGLQIPPAAQQALQMSGSLAFGAVADLQTRLSQQTEASALAAAASVQPLATQCF 340 350 360 370 380 390 430 440 450 460 470 480 pF1KE1 QLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 QLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIA 400 410 420 430 440 450 490 500 510 520 pF1KE1 AVNALHGRWFAGKMITAAYVPLPTYHNLFPDSMTATQLLVPSRR :::::::::::::::::::::::::::::::::::::::::::: NP_001 AVNALHGRWFAGKMITAAYVPLPTYHNLFPDSMTATQLLVPSRR 460 470 480 490 500 >>NP_001229528 (OMIM: 604739) RNA-binding protein 39 iso (508 aa) initn: 2380 init1: 1756 opt: 2778 Z-score: 1268.3 bits: 244.3 E(85289): 6.6e-64 Smith-Waterman score: 3180; 94.7% identity (94.7% similar) in 530 aa overlap (1-524:1-508) 10 20 30 40 50 60 pF1KE1 MADDIDIEAMLEAPYKKDENKLSSANGHEERSKKRKKSKSRSRSHERKRSKSKERKRSRD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MADDIDIEAMLEAPYKKDENKLSSANGHEERSKKRKKSKSRSRSHERKRSKSKERKRSRD 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 RERKKSKSRERKRSRSKERRRSRSRSRDRRFRGRYRSPYSGPKFNSAIRGKIGLPHSIKL ::::::::::::::::::::::::::::::::::::::: NP_001 RERKKSKSRERKRSRSKERRRSRSRSRDRRFRGRYRSPY--------------------- 70 80 90 130 140 150 160 170 180 pF1KE1 SRRRSRSKSPFRKDKSPVREPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVR ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 -RRRSRSKSPFRKDKSPVREPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVR 100 110 120 130 140 150 190 200 210 220 230 240 pF1KE1 DVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKNRAAAMAN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 DVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKNRAAAMAN 160 170 180 190 200 210 250 260 270 280 290 300 pF1KE1 NLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 NLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSD 220 230 240 250 260 270 310 320 330 340 350 360 pF1KE1 SECAKKALEQLNGFELAGRPMKVGHVTERTDASSASSFLDSDELERTGIDLGTTGRLQLM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 SECAKKALEQLNGFELAGRPMKVGHVTERTDASSASSFLDSDELERTGIDLGTTGRLQLM 280 290 300 310 320 330 370 380 390 400 410 pF1KE1 ARLAEGTGLQIPPAAQQALQMSGSLAFGAVA------DLQTRLSQQTEASALAAAASVQP ::::::::::::::::::::::::::::::: ::::::::::::::::::::::: NP_001 ARLAEGTGLQIPPAAQQALQMSGSLAFGAVAEFSFVIDLQTRLSQQTEASALAAAASVQP 340 350 360 370 380 390 420 430 440 450 460 470 pF1KE1 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPS 400 410 420 430 440 450 480 490 500 510 520 pF1KE1 IAAAIAAVNALHGRWFAGKMITAAYVPLPTYHNLFPDSMTATQLLVPSRR :::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 IAAAIAAVNALHGRWFAGKMITAAYVPLPTYHNLFPDSMTATQLLVPSRR 460 470 480 490 500 >>XP_016883631 (OMIM: 604739) PREDICTED: RNA-binding pro (367 aa) initn: 2371 init1: 2371 opt: 2371 Z-score: 1088.5 bits: 210.6 E(85289): 6.8e-54 Smith-Waterman score: 2371; 100.0% identity (100.0% similar) in 367 aa overlap (158-524:1-367) 130 140 150 160 170 180 pF1KE1 KSPFRKDKSPVREPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISD :::::::::::::::::::::::::::::: XP_016 MQLAARIRPRDLEEFFSTVGKVRDVRMISD 10 20 30 190 200 210 220 230 240 pF1KE1 RNSRRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKNRAAAMANNLQKGSA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 RNSRRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKNRAAAMANNLQKGSA 40 50 60 70 80 90 250 260 270 280 290 300 pF1KE1 GPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 GPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKA 100 110 120 130 140 150 310 320 330 340 350 360 pF1KE1 LEQLNGFELAGRPMKVGHVTERTDASSASSFLDSDELERTGIDLGTTGRLQLMARLAEGT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 LEQLNGFELAGRPMKVGHVTERTDASSASSFLDSDELERTGIDLGTTGRLQLMARLAEGT 160 170 180 190 200 210 370 380 390 400 410 420 pF1KE1 GLQIPPAAQQALQMSGSLAFGAVADLQTRLSQQTEASALAAAASVQPLATQCFQLSNMFN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 GLQIPPAAQQALQMSGSLAFGAVADLQTRLSQQTEASALAAAASVQPLATQCFQLSNMFN 220 230 240 250 260 270 430 440 450 460 470 480 pF1KE1 PQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 PQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHG 280 290 300 310 320 330 490 500 510 520 pF1KE1 RWFAGKMITAAYVPLPTYHNLFPDSMTATQLLVPSRR ::::::::::::::::::::::::::::::::::::: XP_016 RWFAGKMITAAYVPLPTYHNLFPDSMTATQLLVPSRR 340 350 360 >>XP_016883634 (OMIM: 604739) PREDICTED: RNA-binding pro (367 aa) initn: 2371 init1: 2371 opt: 2371 Z-score: 1088.5 bits: 210.6 E(85289): 6.8e-54 Smith-Waterman score: 2371; 100.0% identity (100.0% similar) in 367 aa overlap (158-524:1-367) 130 140 150 160 170 180 pF1KE1 KSPFRKDKSPVREPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISD :::::::::::::::::::::::::::::: XP_016 MQLAARIRPRDLEEFFSTVGKVRDVRMISD 10 20 30 190 200 210 220 230 240 pF1KE1 RNSRRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKNRAAAMANNLQKGSA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 RNSRRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKNRAAAMANNLQKGSA 40 50 60 70 80 90 250 260 270 280 290 300 pF1KE1 GPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 GPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKA 100 110 120 130 140 150 310 320 330 340 350 360 pF1KE1 LEQLNGFELAGRPMKVGHVTERTDASSASSFLDSDELERTGIDLGTTGRLQLMARLAEGT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 LEQLNGFELAGRPMKVGHVTERTDASSASSFLDSDELERTGIDLGTTGRLQLMARLAEGT 160 170 180 190 200 210 370 380 390 400 410 420 pF1KE1 GLQIPPAAQQALQMSGSLAFGAVADLQTRLSQQTEASALAAAASVQPLATQCFQLSNMFN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 GLQIPPAAQQALQMSGSLAFGAVADLQTRLSQQTEASALAAAASVQPLATQCFQLSNMFN 220 230 240 250 260 270 430 440 450 460 470 480 pF1KE1 PQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 PQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHG 280 290 300 310 320 330 490 500 510 520 pF1KE1 RWFAGKMITAAYVPLPTYHNLFPDSMTATQLLVPSRR ::::::::::::::::::::::::::::::::::::: XP_016 RWFAGKMITAAYVPLPTYHNLFPDSMTATQLLVPSRR 340 350 360 >>XP_016883632 (OMIM: 604739) PREDICTED: RNA-binding pro (367 aa) initn: 2371 init1: 2371 opt: 2371 Z-score: 1088.5 bits: 210.6 E(85289): 6.8e-54 Smith-Waterman score: 2371; 100.0% identity (100.0% similar) in 367 aa overlap (158-524:1-367) 130 140 150 160 170 180 pF1KE1 KSPFRKDKSPVREPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISD :::::::::::::::::::::::::::::: XP_016 MQLAARIRPRDLEEFFSTVGKVRDVRMISD 10 20 30 190 200 210 220 230 240 pF1KE1 RNSRRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKNRAAAMANNLQKGSA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 RNSRRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKNRAAAMANNLQKGSA 40 50 60 70 80 90 250 260 270 280 290 300 pF1KE1 GPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 GPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKA 100 110 120 130 140 150 310 320 330 340 350 360 pF1KE1 LEQLNGFELAGRPMKVGHVTERTDASSASSFLDSDELERTGIDLGTTGRLQLMARLAEGT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 LEQLNGFELAGRPMKVGHVTERTDASSASSFLDSDELERTGIDLGTTGRLQLMARLAEGT 160 170 180 190 200 210 370 380 390 400 410 420 pF1KE1 GLQIPPAAQQALQMSGSLAFGAVADLQTRLSQQTEASALAAAASVQPLATQCFQLSNMFN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 GLQIPPAAQQALQMSGSLAFGAVADLQTRLSQQTEASALAAAASVQPLATQCFQLSNMFN 220 230 240 250 260 270 430 440 450 460 470 480 pF1KE1 PQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 PQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHG 280 290 300 310 320 330 490 500 510 520 pF1KE1 RWFAGKMITAAYVPLPTYHNLFPDSMTATQLLVPSRR ::::::::::::::::::::::::::::::::::::: XP_016 RWFAGKMITAAYVPLPTYHNLFPDSMTATQLLVPSRR 340 350 360 >>XP_016883630 (OMIM: 604739) PREDICTED: RNA-binding pro (367 aa) initn: 2371 init1: 2371 opt: 2371 Z-score: 1088.5 bits: 210.6 E(85289): 6.8e-54 Smith-Waterman score: 2371; 100.0% identity (100.0% similar) in 367 aa overlap (158-524:1-367) 130 140 150 160 170 180 pF1KE1 KSPFRKDKSPVREPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISD :::::::::::::::::::::::::::::: XP_016 MQLAARIRPRDLEEFFSTVGKVRDVRMISD 10 20 30 190 200 210 220 230 240 pF1KE1 RNSRRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKNRAAAMANNLQKGSA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 RNSRRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKNRAAAMANNLQKGSA 40 50 60 70 80 90 250 260 270 280 290 300 pF1KE1 GPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 GPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKA 100 110 120 130 140 150 310 320 330 340 350 360 pF1KE1 LEQLNGFELAGRPMKVGHVTERTDASSASSFLDSDELERTGIDLGTTGRLQLMARLAEGT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 LEQLNGFELAGRPMKVGHVTERTDASSASSFLDSDELERTGIDLGTTGRLQLMARLAEGT 160 170 180 190 200 210 370 380 390 400 410 420 pF1KE1 GLQIPPAAQQALQMSGSLAFGAVADLQTRLSQQTEASALAAAASVQPLATQCFQLSNMFN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 GLQIPPAAQQALQMSGSLAFGAVADLQTRLSQQTEASALAAAASVQPLATQCFQLSNMFN 220 230 240 250 260 270 430 440 450 460 470 480 pF1KE1 PQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 PQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHG 280 290 300 310 320 330 490 500 510 520 pF1KE1 RWFAGKMITAAYVPLPTYHNLFPDSMTATQLLVPSRR ::::::::::::::::::::::::::::::::::::: XP_016 RWFAGKMITAAYVPLPTYHNLFPDSMTATQLLVPSRR 340 350 360 >>XP_016883633 (OMIM: 604739) PREDICTED: RNA-binding pro (367 aa) initn: 2371 init1: 2371 opt: 2371 Z-score: 1088.5 bits: 210.6 E(85289): 6.8e-54 Smith-Waterman score: 2371; 100.0% identity (100.0% similar) in 367 aa overlap (158-524:1-367) 130 140 150 160 170 180 pF1KE1 KSPFRKDKSPVREPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISD :::::::::::::::::::::::::::::: XP_016 MQLAARIRPRDLEEFFSTVGKVRDVRMISD 10 20 30 190 200 210 220 230 240 pF1KE1 RNSRRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKNRAAAMANNLQKGSA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 RNSRRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKNRAAAMANNLQKGSA 40 50 60 70 80 90 250 260 270 280 290 300 pF1KE1 GPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 GPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKA 100 110 120 130 140 150 310 320 330 340 350 360 pF1KE1 LEQLNGFELAGRPMKVGHVTERTDASSASSFLDSDELERTGIDLGTTGRLQLMARLAEGT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 LEQLNGFELAGRPMKVGHVTERTDASSASSFLDSDELERTGIDLGTTGRLQLMARLAEGT 160 170 180 190 200 210 370 380 390 400 410 420 pF1KE1 GLQIPPAAQQALQMSGSLAFGAVADLQTRLSQQTEASALAAAASVQPLATQCFQLSNMFN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 GLQIPPAAQQALQMSGSLAFGAVADLQTRLSQQTEASALAAAASVQPLATQCFQLSNMFN 220 230 240 250 260 270 430 440 450 460 470 480 pF1KE1 PQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 PQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHG 280 290 300 310 320 330 490 500 510 520 pF1KE1 RWFAGKMITAAYVPLPTYHNLFPDSMTATQLLVPSRR ::::::::::::::::::::::::::::::::::::: XP_016 RWFAGKMITAAYVPLPTYHNLFPDSMTATQLLVPSRR 340 350 360 524 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 13:04:35 2016 done: Sun Nov 6 13:04:37 2016 Total Scan time: 9.440 Total Display time: 0.070 Function used was FASTA [36.3.4 Apr, 2011]