FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5087, 79 aa 1>>>pF1KE5087 79 - 79 aa - 79 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.3400+/-0.000564; mu= 12.9872+/- 0.034 mean_var=53.4135+/-11.035, 0's: 0 Z-trim(111.6): 9 B-trim: 660 in 1/50 Lambda= 0.175488 statistics sampled from 12543 (12547) to 12543 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.767), E-opt: 0.2 (0.385), width: 16 Scan time: 1.170 The best scores are: opt bits E(32554) CCDS13264.1 ROMO1 gene_id:140823|Hs108|chr20 ( 79) 556 147.5 8.1e-37 >>CCDS13264.1 ROMO1 gene_id:140823|Hs108|chr20 (79 aa) initn: 556 init1: 556 opt: 556 Z-score: 774.5 bits: 147.5 E(32554): 8.1e-37 Smith-Waterman score: 556; 100.0% identity (100.0% similar) in 79 aa overlap (1-79:1-79) 10 20 30 40 50 60 pF1KE5 MPVAVGPYGQSQPSCFDRVKMGFVMGCAVGMAAGALFGTFSCLRIGMRGRELMGGIGKTM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 MPVAVGPYGQSQPSCFDRVKMGFVMGCAVGMAAGALFGTFSCLRIGMRGRELMGGIGKTM 10 20 30 40 50 60 70 pF1KE5 MQSGGTFGTFMAIGMGIRC ::::::::::::::::::: CCDS13 MQSGGTFGTFMAIGMGIRC 70 79 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 04:54:09 2016 done: Tue Nov 8 04:54:09 2016 Total Scan time: 1.170 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]