Result of FASTA (omim) for
pFN21AE5254
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE5254, 212 aa
1>>>pF1KE5254 212 - 212 aa - 212 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.8384+/-0.000377; mu= 15.4166+/- 0.023
mean_var=52.9353+/-11.219, 0's: 0 Z-trim(110.9): 28 B-trim: 0 in 0/53
Lambda= 0.176279
statistics sampled from 19357 (19376) to 19357 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.596), E-opt: 0.2 (0.227), width: 16
Scan time: 4.900
The best scores are: opt bits E(85289)
NP_009169 (OMIM: 616397) peroxisomal membrane prot ( 212) 1406 365.5 3.6e-101
NP_899634 (OMIM: 616397) peroxisomal membrane prot ( 71) 371 102.0 2.5e-22
XP_016873631 (OMIM: 616360) PREDICTED: transmembra ( 319) 124 39.5 0.0072
XP_016873630 (OMIM: 616360) PREDICTED: transmembra ( 330) 124 39.5 0.0074
XP_016873629 (OMIM: 616360) PREDICTED: transmembra ( 374) 124 39.6 0.0083
NP_001162195 (OMIM: 616360) transmembrane protein ( 436) 124 39.6 0.0094
NP_075069 (OMIM: 616360) transmembrane protein 135 ( 458) 124 39.6 0.0098
>>NP_009169 (OMIM: 616397) peroxisomal membrane protein (212 aa)
initn: 1406 init1: 1406 opt: 1406 Z-score: 1937.2 bits: 365.5 E(85289): 3.6e-101
Smith-Waterman score: 1406; 99.5% identity (100.0% similar) in 212 aa overlap (1-212:1-212)
10 20 30 40 50 60
pF1KE5 MAAPPQLRALLVVVNALLRKRRYHAALAVLKGFRNGAVYGAKIRAPHALVMTFLFRNGSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 MAAPPQLRALLVVVNALLRKRRYHAALAVLKGFRNGAVYGAKIRAPHALVMTFLFRNGSL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 QEKLWAILQATYIHSWNLARFVFTYKGLRALQSYIQGKTYPAHAFLAAFLGGILVFGENN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 QEKLWAILQATYIHSWNLARFVFTYKGLRALQSYIQGKTYPAHAFLAAFLGGILVFGENN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE5 NINSQINMYLLSRVLFALSRLAVEKGYIPEPRWDPFPLLTAVVWGLVLWLFEYHRSTLQP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 NINSQINMYLLSRVLFALSRLAVEKGYIPEPRWDPFPLLTAVVWGLVLWLFEYHRSTLQP
130 140 150 160 170 180
190 200 210
pF1KE5 SLQSSMTYLYEDSNVWHDISDFLIYNKSRPSN
:::::::::::::::::::::::.::::::::
NP_009 SLQSSMTYLYEDSNVWHDISDFLVYNKSRPSN
190 200 210
>>NP_899634 (OMIM: 616397) peroxisomal membrane protein (71 aa)
initn: 371 init1: 371 opt: 371 Z-score: 521.9 bits: 102.0 E(85289): 2.5e-22
Smith-Waterman score: 371; 100.0% identity (100.0% similar) in 58 aa overlap (1-58:1-58)
10 20 30 40 50 60
pF1KE5 MAAPPQLRALLVVVNALLRKRRYHAALAVLKGFRNGAVYGAKIRAPHALVMTFLFRNGSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_899 MAAPPQLRALLVVVNALLRKRRYHAALAVLKGFRNGAVYGAKIRAPHALVMTFLFRNGRS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 QEKLWAILQATYIHSWNLARFVFTYKGLRALQSYIQGKTYPAHAFLAAFLGGILVFGENN
NP_899 TCTCCHASCLP
70
>>XP_016873631 (OMIM: 616360) PREDICTED: transmembrane p (319 aa)
initn: 95 init1: 76 opt: 124 Z-score: 172.5 bits: 39.5 E(85289): 0.0072
Smith-Waterman score: 124; 24.1% identity (54.3% similar) in 162 aa overlap (30-189:120-272)
10 20 30 40 50
pF1KE5 MAAPPQLRALLVVVNALLRKRRYHAALAVLKGFRNGAVYGAKIRAPHALVMTFLFRNGS
.. : : . .: : :. :: . :
XP_016 FVDSICKHGPRHRCCKHYEDNCISYCIKGFIRMFSVGYLIQCCLRIPSAF--RHLFTQPS
90 100 110 120 130 140
60 70 80 90 100 110
pF1KE5 LQEKLWAILQATYIHSWNLARFVFTYKGLRALQSYIQGKTYPAHAFLAAFLGGI-LVFGE
.:. . . .. :. :: ::: . .:.. ::..:.::.:: ..: .
XP_016 RLLSLFYNKENFQLGAF-LGSFVSIYKGTSCFLRWIRNLDDELHAIIAGFLAGISMMFYK
150 160 170 180 190 200
120 130 140 150 160 170
pF1KE5 NNNINSQINMYLLSRVLFALSRLAVEKGYIPE-PRWDPFPLLTAVVWGLVLWLFEYHRST
. . :.::: :... .. ..: : .: :. : .. .. .. . .. .:
XP_016 S----TTISMYLASKLVETMYFKGIEAGKVPYFPHAD--TIIYSISTAICFQAAVMEVQT
210 220 230 240 250 260
180 190 200 210
pF1KE5 LQPSLQSSMTYLYEDSNVWHDISDFLIYNKSRPSN
:.:: . . :
XP_016 LRPSYWKFLLRLTKGKFAVMNRKVLDVFGTGASKHFQDFIPRLDPRYTTVTPELPTEFS
270 280 290 300 310
>>XP_016873630 (OMIM: 616360) PREDICTED: transmembrane p (330 aa)
initn: 95 init1: 76 opt: 124 Z-score: 172.2 bits: 39.5 E(85289): 0.0074
Smith-Waterman score: 124; 24.1% identity (54.3% similar) in 162 aa overlap (30-189:131-283)
10 20 30 40 50
pF1KE5 MAAPPQLRALLVVVNALLRKRRYHAALAVLKGFRNGAVYGAKIRAPHALVMTFLFRNGS
.. : : . .: : :. :: . :
XP_016 FVDSICKHGPRHRCCKHYEDNCISYCIKGFIRMFSVGYLIQCCLRIPSAF--RHLFTQPS
110 120 130 140 150
60 70 80 90 100 110
pF1KE5 LQEKLWAILQATYIHSWNLARFVFTYKGLRALQSYIQGKTYPAHAFLAAFLGGI-LVFGE
.:. . . .. :. :: ::: . .:.. ::..:.::.:: ..: .
XP_016 RLLSLFYNKENFQLGAF-LGSFVSIYKGTSCFLRWIRNLDDELHAIIAGFLAGISMMFYK
160 170 180 190 200 210
120 130 140 150 160 170
pF1KE5 NNNINSQINMYLLSRVLFALSRLAVEKGYIPE-PRWDPFPLLTAVVWGLVLWLFEYHRST
. . :.::: :... .. ..: : .: :. : .. .. .. . .. .:
XP_016 S----TTISMYLASKLVETMYFKGIEAGKVPYFPHAD--TIIYSISTAICFQAAVMEVQT
220 230 240 250 260 270
180 190 200 210
pF1KE5 LQPSLQSSMTYLYEDSNVWHDISDFLIYNKSRPSN
:.:: . . :
XP_016 LRPSYWKFLLRLTKGKFAVMNRKVLDVFGTGASKHFQDFIPRLDPRYTTVTPELPTEFS
280 290 300 310 320 330
>>XP_016873629 (OMIM: 616360) PREDICTED: transmembrane p (374 aa)
initn: 95 init1: 76 opt: 124 Z-score: 171.4 bits: 39.6 E(85289): 0.0083
Smith-Waterman score: 124; 24.1% identity (54.3% similar) in 162 aa overlap (30-189:175-327)
10 20 30 40 50
pF1KE5 MAAPPQLRALLVVVNALLRKRRYHAALAVLKGFRNGAVYGAKIRAPHALVMTFLFRNGS
.. : : . .: : :. :: . :
XP_016 FVDSICKHGPRHRCCKHYEDNCISYCIKGFIRMFSVGYLIQCCLRIPSAF--RHLFTQPS
150 160 170 180 190 200
60 70 80 90 100 110
pF1KE5 LQEKLWAILQATYIHSWNLARFVFTYKGLRALQSYIQGKTYPAHAFLAAFLGGI-LVFGE
.:. . . .. :. :: ::: . .:.. ::..:.::.:: ..: .
XP_016 RLLSLFYNKENFQLGAF-LGSFVSIYKGTSCFLRWIRNLDDELHAIIAGFLAGISMMFYK
210 220 230 240 250 260
120 130 140 150 160 170
pF1KE5 NNNINSQINMYLLSRVLFALSRLAVEKGYIPE-PRWDPFPLLTAVVWGLVLWLFEYHRST
. . :.::: :... .. ..: : .: :. : .. .. .. . .. .:
XP_016 S----TTISMYLASKLVETMYFKGIEAGKVPYFPHAD--TIIYSISTAICFQAAVMEVQT
270 280 290 300 310
180 190 200 210
pF1KE5 LQPSLQSSMTYLYEDSNVWHDISDFLIYNKSRPSN
:.:: . . :
XP_016 LRPSYWKFLLRLTKGKFAVMNRKVLDVFGTGASKHFQDFIPRLDPRYTTVTPELPTEFS
320 330 340 350 360 370
>>NP_001162195 (OMIM: 616360) transmembrane protein 135 (436 aa)
initn: 119 init1: 76 opt: 124 Z-score: 170.4 bits: 39.6 E(85289): 0.0094
Smith-Waterman score: 124; 24.1% identity (54.3% similar) in 162 aa overlap (30-189:237-389)
10 20 30 40 50
pF1KE5 MAAPPQLRALLVVVNALLRKRRYHAALAVLKGFRNGAVYGAKIRAPHALVMTFLFRNGS
.. : : . .: : :. :: . :
NP_001 FVDSICKHGPRHRCCKHYEDNCISYCIKGFIRMFSVGYLIQCCLRIPSAF--RHLFTQPS
210 220 230 240 250 260
60 70 80 90 100 110
pF1KE5 LQEKLWAILQATYIHSWNLARFVFTYKGLRALQSYIQGKTYPAHAFLAAFLGGI-LVFGE
.:. . . .. :. :: ::: . .:.. ::..:.::.:: ..: .
NP_001 RLLSLFYNKENFQLGAF-LGSFVSIYKGTSCFLRWIRNLDDELHAIIAGFLAGISMMFYK
270 280 290 300 310 320
120 130 140 150 160 170
pF1KE5 NNNINSQINMYLLSRVLFALSRLAVEKGYIPE-PRWDPFPLLTAVVWGLVLWLFEYHRST
. . :.::: :... .. ..: : .: :. : .. .. .. . .. .:
NP_001 S----TTISMYLASKLVETMYFKGIEAGKVPYFPHAD--TIIYSISTAICFQAAVMEVQT
330 340 350 360 370
180 190 200 210
pF1KE5 LQPSLQSSMTYLYEDSNVWHDISDFLIYNKSRPSN
:.:: . . :
NP_001 LRPSYWKFLLRLTKGKFAVMNRKVLDVFGTGASKHFQDFIPRLDPRYTTVTPELPTEFS
380 390 400 410 420 430
>>NP_075069 (OMIM: 616360) transmembrane protein 135 iso (458 aa)
initn: 119 init1: 76 opt: 124 Z-score: 170.1 bits: 39.6 E(85289): 0.0098
Smith-Waterman score: 124; 24.1% identity (54.3% similar) in 162 aa overlap (30-189:259-411)
10 20 30 40 50
pF1KE5 MAAPPQLRALLVVVNALLRKRRYHAALAVLKGFRNGAVYGAKIRAPHALVMTFLFRNGS
.. : : . .: : :. :: . :
NP_075 FVDSICKHGPRHRCCKHYEDNCISYCIKGFIRMFSVGYLIQCCLRIPSAF--RHLFTQPS
230 240 250 260 270 280
60 70 80 90 100 110
pF1KE5 LQEKLWAILQATYIHSWNLARFVFTYKGLRALQSYIQGKTYPAHAFLAAFLGGI-LVFGE
.:. . . .. :. :: ::: . .:.. ::..:.::.:: ..: .
NP_075 RLLSLFYNKENFQLGAF-LGSFVSIYKGTSCFLRWIRNLDDELHAIIAGFLAGISMMFYK
290 300 310 320 330 340
120 130 140 150 160 170
pF1KE5 NNNINSQINMYLLSRVLFALSRLAVEKGYIPE-PRWDPFPLLTAVVWGLVLWLFEYHRST
. . :.::: :... .. ..: : .: :. : .. .. .. . .. .:
NP_075 S----TTISMYLASKLVETMYFKGIEAGKVPYFPHAD--TIIYSISTAICFQAAVMEVQT
350 360 370 380 390
180 190 200 210
pF1KE5 LQPSLQSSMTYLYEDSNVWHDISDFLIYNKSRPSN
:.:: . . :
NP_075 LRPSYWKFLLRLTKGKFAVMNRKVLDVFGTGASKHFQDFIPRLDPRYTTVTPELPTEFS
400 410 420 430 440 450
212 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 22:54:43 2016 done: Mon Nov 7 22:54:44 2016
Total Scan time: 4.900 Total Display time: -0.040
Function used was FASTA [36.3.4 Apr, 2011]