FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5254, 212 aa
  1>>>pF1KE5254 212 - 212 aa - 212 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.9968+/-0.000898; mu= 14.4758+/- 0.053
 mean_var=53.3646+/-11.058, 0's: 0 Z-trim(104.5): 21  B-trim: 0 in 0/49
 Lambda= 0.175569
 statistics sampled from 7916 (7922) to 7916 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.625), E-opt: 0.2 (0.243), width:  16
 Scan time:  1.870

The best scores are:                                      opt bits E(32554)
CCDS13225.1 PXMP4 gene_id:11264|Hs108|chr20        ( 212) 1406 364.0 3.9e-101
CCDS13226.1 PXMP4 gene_id:11264|Hs108|chr20        (  71)  371 101.7 1.2e-22


>>CCDS13225.1 PXMP4 gene_id:11264|Hs108|chr20             (212 aa)
 initn: 1406 init1: 1406 opt: 1406  Z-score: 1929.2  bits: 364.0 E(32554): 3.9e-101
Smith-Waterman score: 1406; 99.5% identity (100.0% similar) in 212 aa overlap (1-212:1-212)

               10        20        30        40        50        60
pF1KE5 MAAPPQLRALLVVVNALLRKRRYHAALAVLKGFRNGAVYGAKIRAPHALVMTFLFRNGSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MAAPPQLRALLVVVNALLRKRRYHAALAVLKGFRNGAVYGAKIRAPHALVMTFLFRNGSL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 QEKLWAILQATYIHSWNLARFVFTYKGLRALQSYIQGKTYPAHAFLAAFLGGILVFGENN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 QEKLWAILQATYIHSWNLARFVFTYKGLRALQSYIQGKTYPAHAFLAAFLGGILVFGENN
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 NINSQINMYLLSRVLFALSRLAVEKGYIPEPRWDPFPLLTAVVWGLVLWLFEYHRSTLQP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 NINSQINMYLLSRVLFALSRLAVEKGYIPEPRWDPFPLLTAVVWGLVLWLFEYHRSTLQP
              130       140       150       160       170       180

              190       200       210  
pF1KE5 SLQSSMTYLYEDSNVWHDISDFLIYNKSRPSN
       :::::::::::::::::::::::.::::::::
CCDS13 SLQSSMTYLYEDSNVWHDISDFLVYNKSRPSN
              190       200       210  

>>CCDS13226.1 PXMP4 gene_id:11264|Hs108|chr20             (71 aa)
 initn: 371 init1: 371 opt: 371  Z-score: 519.9  bits: 101.7 E(32554): 1.2e-22
Smith-Waterman score: 371; 100.0% identity (100.0% similar) in 58 aa overlap (1-58:1-58)

               10        20        30        40        50        60
pF1KE5 MAAPPQLRALLVVVNALLRKRRYHAALAVLKGFRNGAVYGAKIRAPHALVMTFLFRNGSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::  
CCDS13 MAAPPQLRALLVVVNALLRKRRYHAALAVLKGFRNGAVYGAKIRAPHALVMTFLFRNGRS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 QEKLWAILQATYIHSWNLARFVFTYKGLRALQSYIQGKTYPAHAFLAAFLGGILVFGENN
                                                                   
CCDS13 TCTCCHASCLP                                                 
               70                                                  




212 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 22:54:42 2016 done: Mon Nov  7 22:54:43 2016
 Total Scan time:  1.870 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]