FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5239, 256 aa 1>>>pF1KE5239 256 - 256 aa - 256 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.4360+/-0.000311; mu= 14.9917+/- 0.019 mean_var=80.0556+/-16.480, 0's: 0 Z-trim(117.1): 7 B-trim: 0 in 0/53 Lambda= 0.143344 statistics sampled from 28774 (28778) to 28774 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.716), E-opt: 0.2 (0.337), width: 16 Scan time: 7.400 The best scores are: opt bits E(85289) NP_057667 (OMIM: 607412) BPI fold-containing famil ( 256) 1642 348.6 6.3e-96 NP_001230122 (OMIM: 607412) BPI fold-containing fa ( 256) 1642 348.6 6.3e-96 NP_570913 (OMIM: 607412) BPI fold-containing famil ( 256) 1642 348.6 6.3e-96 NP_872325 (OMIM: 615718) BPI fold-containing famil ( 614) 208 52.4 2.3e-06 >>NP_057667 (OMIM: 607412) BPI fold-containing family A (256 aa) initn: 1642 init1: 1642 opt: 1642 Z-score: 1843.2 bits: 348.6 E(85289): 6.3e-96 Smith-Waterman score: 1642; 100.0% identity (100.0% similar) in 256 aa overlap (1-256:1-256) 10 20 30 40 50 60 pF1KE5 MFQTGGLIVFYGLLAQTMAQFGGLPVPLDQTLPLNVNPALPLSPTGLAGSLTNALSNGLL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_057 MFQTGGLIVFYGLLAQTMAQFGGLPVPLDQTLPLNVNPALPLSPTGLAGSLTNALSNGLL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 SGGLLGILENLPLLDILKPGGGTSGGLLGGLLGKVTSVIPGLNNIIDIKVTDPQLLELGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_057 SGGLLGILENLPLLDILKPGGGTSGGLLGGLLGKVTSVIPGLNNIIDIKVTDPQLLELGL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 VQSPDGHRLYVTIPLGIKLQVNTPLVGASLLRLAVKLDITAEILAVRDKQERIHLVLGDC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_057 VQSPDGHRLYVTIPLGIKLQVNTPLVGASLLRLAVKLDITAEILAVRDKQERIHLVLGDC 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE5 THSPGSLQISLLDGLGPLPIQGLLDSLTGILNKVLPELVQGNVCPLVNEVLRGLDITLVH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_057 THSPGSLQISLLDGLGPLPIQGLLDSLTGILNKVLPELVQGNVCPLVNEVLRGLDITLVH 190 200 210 220 230 240 250 pF1KE5 DIVNMLIHGLQFVIKV :::::::::::::::: NP_057 DIVNMLIHGLQFVIKV 250 >>NP_001230122 (OMIM: 607412) BPI fold-containing family (256 aa) initn: 1642 init1: 1642 opt: 1642 Z-score: 1843.2 bits: 348.6 E(85289): 6.3e-96 Smith-Waterman score: 1642; 100.0% identity (100.0% similar) in 256 aa overlap (1-256:1-256) 10 20 30 40 50 60 pF1KE5 MFQTGGLIVFYGLLAQTMAQFGGLPVPLDQTLPLNVNPALPLSPTGLAGSLTNALSNGLL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MFQTGGLIVFYGLLAQTMAQFGGLPVPLDQTLPLNVNPALPLSPTGLAGSLTNALSNGLL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 SGGLLGILENLPLLDILKPGGGTSGGLLGGLLGKVTSVIPGLNNIIDIKVTDPQLLELGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 SGGLLGILENLPLLDILKPGGGTSGGLLGGLLGKVTSVIPGLNNIIDIKVTDPQLLELGL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 VQSPDGHRLYVTIPLGIKLQVNTPLVGASLLRLAVKLDITAEILAVRDKQERIHLVLGDC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 VQSPDGHRLYVTIPLGIKLQVNTPLVGASLLRLAVKLDITAEILAVRDKQERIHLVLGDC 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE5 THSPGSLQISLLDGLGPLPIQGLLDSLTGILNKVLPELVQGNVCPLVNEVLRGLDITLVH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 THSPGSLQISLLDGLGPLPIQGLLDSLTGILNKVLPELVQGNVCPLVNEVLRGLDITLVH 190 200 210 220 230 240 250 pF1KE5 DIVNMLIHGLQFVIKV :::::::::::::::: NP_001 DIVNMLIHGLQFVIKV 250 >>NP_570913 (OMIM: 607412) BPI fold-containing family A (256 aa) initn: 1642 init1: 1642 opt: 1642 Z-score: 1843.2 bits: 348.6 E(85289): 6.3e-96 Smith-Waterman score: 1642; 100.0% identity (100.0% similar) in 256 aa overlap (1-256:1-256) 10 20 30 40 50 60 pF1KE5 MFQTGGLIVFYGLLAQTMAQFGGLPVPLDQTLPLNVNPALPLSPTGLAGSLTNALSNGLL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_570 MFQTGGLIVFYGLLAQTMAQFGGLPVPLDQTLPLNVNPALPLSPTGLAGSLTNALSNGLL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 SGGLLGILENLPLLDILKPGGGTSGGLLGGLLGKVTSVIPGLNNIIDIKVTDPQLLELGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_570 SGGLLGILENLPLLDILKPGGGTSGGLLGGLLGKVTSVIPGLNNIIDIKVTDPQLLELGL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 VQSPDGHRLYVTIPLGIKLQVNTPLVGASLLRLAVKLDITAEILAVRDKQERIHLVLGDC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_570 VQSPDGHRLYVTIPLGIKLQVNTPLVGASLLRLAVKLDITAEILAVRDKQERIHLVLGDC 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE5 THSPGSLQISLLDGLGPLPIQGLLDSLTGILNKVLPELVQGNVCPLVNEVLRGLDITLVH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_570 THSPGSLQISLLDGLGPLPIQGLLDSLTGILNKVLPELVQGNVCPLVNEVLRGLDITLVH 190 200 210 220 230 240 250 pF1KE5 DIVNMLIHGLQFVIKV :::::::::::::::: NP_570 DIVNMLIHGLQFVIKV 250 >>NP_872325 (OMIM: 615718) BPI fold-containing family B (614 aa) initn: 163 init1: 93 opt: 208 Z-score: 235.2 bits: 52.4 E(85289): 2.3e-06 Smith-Waterman score: 217; 29.3% identity (59.0% similar) in 229 aa overlap (33-249:154-359) 10 20 30 40 50 pF1KE5 QTGGLIVFYGLLAQTMAQFGGLPVPLDQTLPLNVNPALP---LSPTGLAGSLTNALSNGL : .. :.. ..: :: :. ..:. NP_872 RSAENAYGGHRGLGRYRAAPVGRLHRRELQPGEIPPGVATGAVGPGGLLGTGGMLAADGI 130 140 150 160 170 180 60 70 80 90 100 110 pF1KE5 LSG--GLLGILENLPLLDILKPGGGTSGGLLGGLLGK--VTSVIPGLNNIIDIKVTDPQL :.: :::: .: :: .:: . :.::. . :.. :.... ...: :.. NP_872 LAGQGGLLG------GGGLLGDGGLLGGGGVLGVLGEGGILSTVQGITGLRIVELTLPRV 190 200 210 220 230 120 130 140 150 160 170 pF1KE5 LELGLVQSPDGHRLYVTIPLGIKLQVN-TPLVGASLLRLAVKLDITAEILAVRDKQERIH :. : .:.. : .. .: :.: .: .::...:::.. . :. . NP_872 ----SVRLLPGVGVYLS--LYTRVAINGKSLIG--FLDIAVEVNITAKVRLTMDRTGYPR 240 250 260 270 280 180 190 200 210 220 230 pF1KE5 LVLGDCTHSPGSLQISLLDGLGPLPIQGLLDSLTG-ILNKVLPELVQGNVCPLVNEVLRG ::. : :.....:: :: : .:.:.:.. .: :::.:. ::.:. :: : NP_872 LVIERCDTLLGGIKVKLLRGLLP----NLVDNLVNRVLADVLPDLL----CPIVDVVL-G 290 300 310 320 330 340 240 250 pF1KE5 L---DITLVHDIVNMLIHGLQFVIKV : .. :: ... . : : NP_872 LVNDQLGLVDSLIPLGILGSVQYTFSSLPLVTGEFLELDLNTLVGEAGGGLIDYPLGWPA 350 360 370 380 390 400 256 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 22:48:03 2016 done: Mon Nov 7 22:48:04 2016 Total Scan time: 7.400 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]