FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5239, 256 aa 1>>>pF1KE5239 256 - 256 aa - 256 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.7394+/-0.000706; mu= 13.0270+/- 0.042 mean_var=74.4062+/-15.375, 0's: 0 Z-trim(110.1): 14 B-trim: 0 in 0/51 Lambda= 0.148686 statistics sampled from 11346 (11352) to 11346 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.723), E-opt: 0.2 (0.349), width: 16 Scan time: 2.040 The best scores are: opt bits E(32554) CCDS13217.1 BPIFA1 gene_id:51297|Hs108|chr20 ( 256) 1642 361.0 4.7e-100 CCDS13214.1 BPIFA2 gene_id:140683|Hs108|chr20 ( 249) 260 64.5 8e-11 >>CCDS13217.1 BPIFA1 gene_id:51297|Hs108|chr20 (256 aa) initn: 1642 init1: 1642 opt: 1642 Z-score: 1909.8 bits: 361.0 E(32554): 4.7e-100 Smith-Waterman score: 1642; 100.0% identity (100.0% similar) in 256 aa overlap (1-256:1-256) 10 20 30 40 50 60 pF1KE5 MFQTGGLIVFYGLLAQTMAQFGGLPVPLDQTLPLNVNPALPLSPTGLAGSLTNALSNGLL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 MFQTGGLIVFYGLLAQTMAQFGGLPVPLDQTLPLNVNPALPLSPTGLAGSLTNALSNGLL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 SGGLLGILENLPLLDILKPGGGTSGGLLGGLLGKVTSVIPGLNNIIDIKVTDPQLLELGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 SGGLLGILENLPLLDILKPGGGTSGGLLGGLLGKVTSVIPGLNNIIDIKVTDPQLLELGL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 VQSPDGHRLYVTIPLGIKLQVNTPLVGASLLRLAVKLDITAEILAVRDKQERIHLVLGDC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 VQSPDGHRLYVTIPLGIKLQVNTPLVGASLLRLAVKLDITAEILAVRDKQERIHLVLGDC 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE5 THSPGSLQISLLDGLGPLPIQGLLDSLTGILNKVLPELVQGNVCPLVNEVLRGLDITLVH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 THSPGSLQISLLDGLGPLPIQGLLDSLTGILNKVLPELVQGNVCPLVNEVLRGLDITLVH 190 200 210 220 230 240 250 pF1KE5 DIVNMLIHGLQFVIKV :::::::::::::::: CCDS13 DIVNMLIHGLQFVIKV 250 >>CCDS13214.1 BPIFA2 gene_id:140683|Hs108|chr20 (249 aa) initn: 143 init1: 72 opt: 260 Z-score: 307.8 bits: 64.5 E(32554): 8e-11 Smith-Waterman score: 260; 24.4% identity (61.4% similar) in 254 aa overlap (1-252:1-245) 10 20 30 40 50 60 pF1KE5 MFQTGGLIVFYGLLAQTMAQFGGLPVPLDQTLPLNVNPALPLSPTGLAGSLTNALSNGLL :.: :... :.:. : . : : . : :. :. :: .. :.:.. : CCDS13 MLQLWKLVLLCGVLTGTSES---LLDNLGNDLSNVVDKLEPVLHEGLE-TVDNTLKGILE 10 20 30 40 50 70 80 90 100 110 pF1KE5 SGGL-LGILENLPLLDILKPGGGTSGGLLGGLLGKVTSVIPGLNNIIDIKVTDPQLLELG . . ::.:.. .. : . . ::.....:. .: ..:. .:... .:.. CCDS13 KLKVDLGVLQKSSAWQLAKQKAQEAEKLLNNVISKL---LPTNTDIFGLKISNSLILDVK 60 70 80 90 100 110 120 130 140 150 160 170 pF1KE5 LVQSPDGHRLYVTIPLGIKLQVNTPLVGASLLRLAVKLDITAEILAVRDKQERIHL-VLG ::. : ...:. .. : :..: ... : ..::. . . : : . . ::: CCDS13 AEPIDDGKGLNLSFPVTANVTVAGPIIG-QIINLKASLDLLTAVTIETDPQTHQPVAVLG 120 130 140 150 160 170 180 190 200 210 220 230 pF1KE5 DCTHSPGSLQISLLDGLGPLPIQGLLDSLTGILNKVLPELVQGNVCPLVNEVLRGLDITL .:. .: :...:::: . . :. ...:. . :.... :.: ..:::. ...::... CCDS13 ECASDPTSISLSLLDKHSQI-INKFVNSVINTLKSTVSSLLQKEICPLIRIFIHSLDVNV 180 190 200 210 220 230 240 250 pF1KE5 VHDIVNMLIHGLQFVIKV ....:. : :. CCDS13 IQQVVDNPQHKTQLQTLI 240 256 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 22:48:02 2016 done: Mon Nov 7 22:48:02 2016 Total Scan time: 2.040 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]