Result of FASTA (ccds) for
pFN21AB7931
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7931, 365 aa
1>>>pF1KB7931 365 - 365 aa - 365 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.4820+/-0.000813; mu= 5.6340+/- 0.049
mean_var=253.2491+/-51.727, 0's: 0 Z-trim(116.8): 148 B-trim: 11 in 1/53
Lambda= 0.080594
statistics sampled from 17339 (17508) to 17339 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.83), E-opt: 0.2 (0.538), width: 16
Scan time: 2.530
The best scores are: opt bits E(32554)
CCDS13168.1 VSX1 gene_id:30813|Hs108|chr20 ( 365) 2504 303.4 2e-82
CCDS58767.1 VSX1 gene_id:30813|Hs108|chr20 ( 301) 1866 229.2 3.7e-60
CCDS13169.1 VSX1 gene_id:30813|Hs108|chr20 ( 239) 1434 178.8 4.2e-45
CCDS58766.1 VSX1 gene_id:30813|Hs108|chr20 ( 236) 1429 178.2 6.2e-45
CCDS9827.1 VSX2 gene_id:338917|Hs108|chr14 ( 361) 764 101.1 1.6e-21
>>CCDS13168.1 VSX1 gene_id:30813|Hs108|chr20 (365 aa)
initn: 2504 init1: 2504 opt: 2504 Z-score: 1593.3 bits: 303.4 E(32554): 2e-82
Smith-Waterman score: 2504; 100.0% identity (100.0% similar) in 365 aa overlap (1-365:1-365)
10 20 30 40 50 60
pF1KB7 MTGRDSLSDGRTSSRALVPGGSPRGSRPRGFAITDLLGLEAELPAPAGPGQGSGCEGPAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MTGRDSLSDGRTSSRALVPGGSPRGSRPRGFAITDLLGLEAELPAPAGPGQGSGCEGPAV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 APCPGPGLDGSSLARGALPLGLGLLCGFGTQPPAAARAPCLLLADVPFLPPRGPEPAAPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 APCPGPGLDGSSLARGALPLGLGLLCGFGTQPPAAARAPCLLLADVPFLPPRGPEPAAPL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 APSRPPPALGRQKRSDSVSTSDEDSQSEDRNDLKASPTLGKRKKRRHRTVFTAHQLEELE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 APSRPPPALGRQKRSDSVSTSDEDSQSEDRNDLKASPTLGKRKKRRHRTVFTAHQLEELE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 KAFSEAHYPDVYAREMLAVKTELPEDRIQVWFQNRRAKWRKREKRWGGSSVMAEYGLYGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 KAFSEAHYPDVYAREMLAVKTELPEDRIQVWFQNRRAKWRKREKRWGGSSVMAEYGLYGA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 MVRHCIPLPDSVLNSAEGGLLGSCAPWLLGMHKKSMGMIRKPGSEDKLAGLWGSDHFKEG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MVRHCIPLPDSVLNSAEGGLLGSCAPWLLGMHKKSMGMIRKPGSEDKLAGLWGSDHFKEG
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB7 SSQSESGSQRGSDKVSPENGLEDVAIDLSSSARQETKKVHPGAGAQGGSNSTALEGPQPG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 SSQSESGSQRGSDKVSPENGLEDVAIDLSSSARQETKKVHPGAGAQGGSNSTALEGPQPG
310 320 330 340 350 360
pF1KB7 KVGAT
:::::
CCDS13 KVGAT
>>CCDS58767.1 VSX1 gene_id:30813|Hs108|chr20 (301 aa)
initn: 1866 init1: 1866 opt: 1866 Z-score: 1193.4 bits: 229.2 E(32554): 3.7e-60
Smith-Waterman score: 1866; 100.0% identity (100.0% similar) in 269 aa overlap (1-269:1-269)
10 20 30 40 50 60
pF1KB7 MTGRDSLSDGRTSSRALVPGGSPRGSRPRGFAITDLLGLEAELPAPAGPGQGSGCEGPAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 MTGRDSLSDGRTSSRALVPGGSPRGSRPRGFAITDLLGLEAELPAPAGPGQGSGCEGPAV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 APCPGPGLDGSSLARGALPLGLGLLCGFGTQPPAAARAPCLLLADVPFLPPRGPEPAAPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 APCPGPGLDGSSLARGALPLGLGLLCGFGTQPPAAARAPCLLLADVPFLPPRGPEPAAPL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 APSRPPPALGRQKRSDSVSTSDEDSQSEDRNDLKASPTLGKRKKRRHRTVFTAHQLEELE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 APSRPPPALGRQKRSDSVSTSDEDSQSEDRNDLKASPTLGKRKKRRHRTVFTAHQLEELE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 KAFSEAHYPDVYAREMLAVKTELPEDRIQVWFQNRRAKWRKREKRWGGSSVMAEYGLYGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 KAFSEAHYPDVYAREMLAVKTELPEDRIQVWFQNRRAKWRKREKRWGGSSVMAEYGLYGA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 MVRHCIPLPDSVLNSAEGGLLGSCAPWLLGMHKKSMGMIRKPGSEDKLAGLWGSDHFKEG
:::::::::::::::::::::::::::::
CCDS58 MVRHCIPLPDSVLNSAEGGLLGSCAPWLLVQTSAPGGSRSLDFAGDTQAPQTPWWCLMTF
250 260 270 280 290 300
>>CCDS13169.1 VSX1 gene_id:30813|Hs108|chr20 (239 aa)
initn: 1434 init1: 1434 opt: 1434 Z-score: 923.2 bits: 178.8 E(32554): 4.2e-45
Smith-Waterman score: 1434; 100.0% identity (100.0% similar) in 210 aa overlap (1-210:1-210)
10 20 30 40 50 60
pF1KB7 MTGRDSLSDGRTSSRALVPGGSPRGSRPRGFAITDLLGLEAELPAPAGPGQGSGCEGPAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MTGRDSLSDGRTSSRALVPGGSPRGSRPRGFAITDLLGLEAELPAPAGPGQGSGCEGPAV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 APCPGPGLDGSSLARGALPLGLGLLCGFGTQPPAAARAPCLLLADVPFLPPRGPEPAAPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 APCPGPGLDGSSLARGALPLGLGLLCGFGTQPPAAARAPCLLLADVPFLPPRGPEPAAPL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 APSRPPPALGRQKRSDSVSTSDEDSQSEDRNDLKASPTLGKRKKRRHRTVFTAHQLEELE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 APSRPPPALGRQKRSDSVSTSDEDSQSEDRNDLKASPTLGKRKKRRHRTVFTAHQLEELE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 KAFSEAHYPDVYAREMLAVKTELPEDRIQVWFQNRRAKWRKREKRWGGSSVMAEYGLYGA
::::::::::::::::::::::::::::::
CCDS13 KAFSEAHYPDVYAREMLAVKTELPEDRIQVSGVPFLRSKDTTENVSFPHSVSQSAVPSL
190 200 210 220 230
>>CCDS58766.1 VSX1 gene_id:30813|Hs108|chr20 (236 aa)
initn: 1429 init1: 1429 opt: 1429 Z-score: 920.1 bits: 178.2 E(32554): 6.2e-45
Smith-Waterman score: 1429; 100.0% identity (100.0% similar) in 209 aa overlap (1-209:1-209)
10 20 30 40 50 60
pF1KB7 MTGRDSLSDGRTSSRALVPGGSPRGSRPRGFAITDLLGLEAELPAPAGPGQGSGCEGPAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 MTGRDSLSDGRTSSRALVPGGSPRGSRPRGFAITDLLGLEAELPAPAGPGQGSGCEGPAV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 APCPGPGLDGSSLARGALPLGLGLLCGFGTQPPAAARAPCLLLADVPFLPPRGPEPAAPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 APCPGPGLDGSSLARGALPLGLGLLCGFGTQPPAAARAPCLLLADVPFLPPRGPEPAAPL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 APSRPPPALGRQKRSDSVSTSDEDSQSEDRNDLKASPTLGKRKKRRHRTVFTAHQLEELE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 APSRPPPALGRQKRSDSVSTSDEDSQSEDRNDLKASPTLGKRKKRRHRTVFTAHQLEELE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 KAFSEAHYPDVYAREMLAVKTELPEDRIQVWFQNRRAKWRKREKRWGGSSVMAEYGLYGA
:::::::::::::::::::::::::::::
CCDS58 KAFSEAHYPDVYAREMLAVKTELPEDRIQCKLLLLEAPVHWTLQETHRLPRPRGGA
190 200 210 220 230
>>CCDS9827.1 VSX2 gene_id:338917|Hs108|chr14 (361 aa)
initn: 776 init1: 701 opt: 764 Z-score: 500.0 bits: 101.1 E(32554): 1.6e-21
Smith-Waterman score: 816; 45.8% identity (65.6% similar) in 369 aa overlap (1-359:1-337)
10 20 30 40 50
pF1KB7 MTGR--DSLSDGRTSSRAL-VPGGSPRGSRPRGFAITDLLGLEAELPAPAGPGQGSGCEG
:::. ..:: .. . : . ::.: .: ::.: ..:::. : : . : .. .:
CCDS98 MTGKAGEALSKPKSETVAKSTSGGAP--ARCTGFGIQEILGLNKE-PPSSHPR--AALDG
10 20 30 40 50
60 70 80 90 100 110
pF1KB7 PAVAPCPGPGLDGSSLARGALPLGLGLLCGFGTQPPAAARAPCL-LLADVPFLPPRGPEP
: :: : . :. : :.::: : : : .. : .:.: :.. .
CCDS98 LA----PGHLLAARSVLSPAGVGGMGLL-GPGGLPGFYTQPTFLEVLSD-----PQSVH-
60 70 80 90 100
120 130 140 150 160 170
pF1KB7 AAPLAPSRPPPALGRQKRSDSVSTSDEDSQSEDRNDLKAS-PTLGKRKKRRHRTVFTAHQ
::. . : :...:...:: .: ::. :.. :::::::::.::..:
CCDS98 LQPLGRASGP-----LDTSQTASSDSEDVSSSDRKMSKSALNQTKKRKKRRHRTIFTSYQ
110 120 130 140 150
180 190 200 210 220 230
pF1KB7 LEELEKAFSEAHYPDVYAREMLAVKTELPEDRIQVWFQNRRAKWRKREKRWGGSSVMAEY
::::::::.::::::::::::::.::::::::::::::::::::::::: :: :::::::
CCDS98 LEELEKAFNEAHYPDVYAREMLAMKTELPEDRIQVWFQNRRAKWRKREKCWGRSSVMAEY
160 170 180 190 200 210
240 250 260 270 280 290
pF1KB7 GLYGAMVRHCIPLPDSVLNSAEGGLLGSCAPWLLGMHKKSMGMI----RKP-GSEDKLAG
::::::::: ::::.:.:.::. :.. :::::::::::::. ::: : .. :
CCDS98 GLYGAMVRHSIPLPESILKSAKDGIMDSCAPWLLGMHKKSLEAAAESGRKPEGERQALPK
220 230 240 250 260 270
300 310 320 330 340 350
pF1KB7 LWGSDHFKEGSSQSESGSQRGSDKVSPENGLEDVAIDLSSSARQETKKVHPGAGAQGGSN
: :... :.: : . .. .: :. :. : ..:.... :: :. .: .
CCDS98 L---DKME----QDERGPD-AQAAISQEELRENSIAVLRAKAQEHSTKV---LGTVSGPD
280 290 300 310 320
360
pF1KB7 STALEGPQPGKVGAT
: : .:
CCDS98 SLARSTEKPEEEEAMDEDRPAERLSPPQLEDMA
330 340 350 360
365 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 01:38:53 2016 done: Tue Nov 8 01:38:53 2016
Total Scan time: 2.530 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]