FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1627, 142 aa 1>>>pF1KE1627 142 - 142 aa - 142 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.8142+/-0.000749; mu= 13.5548+/- 0.045 mean_var=58.8084+/-11.499, 0's: 0 Z-trim(107.9): 18 B-trim: 0 in 0/51 Lambda= 0.167246 statistics sampled from 9877 (9892) to 9877 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.702), E-opt: 0.2 (0.304), width: 16 Scan time: 1.670 The best scores are: opt bits E(32554) CCDS13162.1 CST5 gene_id:1473|Hs108|chr20 ( 142) 947 236.3 4.8e-63 CCDS13161.1 CST2 gene_id:1470|Hs108|chr20 ( 141) 566 144.4 2.2e-35 CCDS13159.1 CST4 gene_id:1472|Hs108|chr20 ( 141) 556 142.0 1.2e-34 CCDS13160.1 CST1 gene_id:1469|Hs108|chr20 ( 141) 540 138.1 1.7e-33 CCDS13158.1 CST3 gene_id:1471|Hs108|chr20 ( 146) 499 128.2 1.7e-30 >>CCDS13162.1 CST5 gene_id:1473|Hs108|chr20 (142 aa) initn: 947 init1: 947 opt: 947 Z-score: 1245.4 bits: 236.3 E(32554): 4.8e-63 Smith-Waterman score: 947; 99.3% identity (99.3% similar) in 142 aa overlap (1-142:1-142) 10 20 30 40 50 60 pF1KE1 MMWPMHTPLLLLTALMVAVAGSASAQSRTLAGGIHATDLNDKSVQRALDFAISEYNKVIN ::::::::::::::::::::::::::::::::::::::::::::: :::::::::::::: CCDS13 MMWPMHTPLLLLTALMVAVAGSASAQSRTLAGGIHATDLNDKSVQCALDFAISEYNKVIN 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 KDEYYSRPLQVMAAYQQIVGGVNYYFNVKFGRTTCTKSQPNLDNCPFNDQPKLKEEEFCS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 KDEYYSRPLQVMAAYQQIVGGVNYYFNVKFGRTTCTKSQPNLDNCPFNDQPKLKEEEFCS 70 80 90 100 110 120 130 140 pF1KE1 FQINEVPWEDKISILNYKCRKV :::::::::::::::::::::: CCDS13 FQINEVPWEDKISILNYKCRKV 130 140 >>CCDS13161.1 CST2 gene_id:1470|Hs108|chr20 (141 aa) initn: 563 init1: 381 opt: 566 Z-score: 748.6 bits: 144.4 E(32554): 2.2e-35 Smith-Waterman score: 566; 56.7% identity (83.7% similar) in 141 aa overlap (1-141:1-140) 10 20 30 40 50 60 pF1KE1 MMWPMHTPLLLLTALMVAVAGSASAQSRTLAGGIHATDLNDKSVQRALDFAISEYNKVIN : ::. : ::::.. ::.: : . ..: . :::. .::::. ::::: :.::::::. . CCDS13 MAWPLCTLLLLLATQAVALAWSPQEEDRIIEGGIYDADLNDERVQRALHFVISEYNKA-T 10 20 30 40 50 70 80 90 100 110 120 pF1KE1 KDEYYSRPLQVMAAYQQIVGGVNYYFNVKFGRTTCTKSQPNLDNCPFNDQPKLKEEEFCS .:::: : :.:. : .::::::::.:... ::: :::::::::.: :..::.:.....:: CCDS13 EDEYYRRLLRVLRAREQIVGGVNYFFDIEVGRTICTKSQPNLDTCAFHEQPELQKKQLCS 60 70 80 90 100 110 130 140 pF1KE1 FQINEVPWEDKISILNYKCRKV ::: ::::::..:..: .:.. CCDS13 FQIYEVPWEDRMSLVNSRCQEA 120 130 140 >>CCDS13159.1 CST4 gene_id:1472|Hs108|chr20 (141 aa) initn: 624 init1: 385 opt: 556 Z-score: 735.6 bits: 142.0 E(32554): 1.2e-34 Smith-Waterman score: 556; 56.0% identity (83.7% similar) in 141 aa overlap (1-141:1-140) 10 20 30 40 50 60 pF1KE1 MMWPMHTPLLLLTALMVAVAGSASAQSRTLAGGIHATDLNDKSVQRALDFAISEYNKVIN : :. : :::...: :.:.:.. ..: . :::. .::::. ::::: ::::::::. . CCDS13 MARPLCTLLLLMATLAGALASSSKEENRIIPGGIYDADLNDEWVQRALHFAISEYNKA-T 10 20 30 40 50 70 80 90 100 110 120 pF1KE1 KDEYYSRPLQVMAAYQQIVGGVNYYFNVKFGRTTCTKSQPNLDNCPFNDQPKLKEEEFCS .:::: :::::. : .: :::::.:.:. ::: :::::::::.: :..::.:.....:: CCDS13 EDEYYRRPLQVLRAREQTFGGVNYFFDVEVGRTICTKSQPNLDTCAFHEQPELQKKQLCS 60 70 80 90 100 110 130 140 pF1KE1 FQINEVPWEDKISILNYKCRKV :.: ::::::..:..: .:.. CCDS13 FEIYEVPWEDRMSLVNSRCQEA 120 130 140 >>CCDS13160.1 CST1 gene_id:1469|Hs108|chr20 (141 aa) initn: 557 init1: 373 opt: 540 Z-score: 714.7 bits: 138.1 E(32554): 1.7e-33 Smith-Waterman score: 540; 56.0% identity (82.3% similar) in 141 aa overlap (1-141:1-140) 10 20 30 40 50 60 pF1KE1 MMWPMHTPLLLLTALMVAVAGSASAQSRTLAGGIHATDLNDKSVQRALDFAISEYNKVIN : . : ::::..: ::.: : . ..: . :::. .::::. ::::: ::::::::. . CCDS13 MAQYLSTLLLLLATLAVALAWSPKEEDRIIPGGIYNADLNDEWVQRALHFAISEYNKA-T 10 20 30 40 50 70 80 90 100 110 120 pF1KE1 KDEYYSRPLQVMAAYQQIVGGVNYYFNVKFGRTTCTKSQPNLDNCPFNDQPKLKEEEFCS ::.:: :::.:. : :: ::::::.:.:. ::: :::::::::.: :..::.:.....:: CCDS13 KDDYYRRPLRVLRARQQTVGGVNYFFDVEVGRTICTKSQPNLDTCAFHEQPELQKKQLCS 60 70 80 90 100 110 130 140 pF1KE1 FQINEVPWEDKISILNYKCRKV :.: :::::.. :... .:.. CCDS13 FEIYEVPWENRRSLVKSRCQES 120 130 140 >>CCDS13158.1 CST3 gene_id:1471|Hs108|chr20 (146 aa) initn: 493 init1: 334 opt: 499 Z-score: 661.0 bits: 128.2 E(32554): 1.7e-30 Smith-Waterman score: 499; 51.7% identity (79.3% similar) in 145 aa overlap (1-140:1-144) 10 20 30 40 50 pF1KE1 MMWPMHTPLLLLTALMVAVA-----GSASAQSRTLAGGIHATDLNDKSVQRALDFAISEY : :...:::::. : ::.: ::. .. :.:: .......:.::::::..:: CCDS13 MAGPLRAPLLLLAILAVALAVSPAAGSSPGKPPRLVGGPMDASVEEEGVRRALDFAVGEY 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE1 NKVINKDEYYSRPLQVMAAYQQIVGGVNYYFNVKFGRTTCTKSQPNLDNCPFNDQPKLKE ::. : : :.:: :::. : .:::.::::...:..:::::::.:::::::::.:::.::. CCDS13 NKASN-DMYHSRALQVVRARKQIVAGVNYFLDVELGRTTCTKTQPNLDNCPFHDQPHLKR 70 80 90 100 110 120 130 140 pF1KE1 EEFCSFQINEVPWEDKISILNYKCRKV . :::::: :::. ... . :. CCDS13 KAFCSFQIYAVPWQGTMTLSKSTCQDA 120 130 140 142 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 13:06:52 2016 done: Sun Nov 6 13:06:52 2016 Total Scan time: 1.670 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]