FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3135, 345 aa 1>>>pF1KE3135 345 - 345 aa - 345 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.5453+/-0.000351; mu= 20.6743+/- 0.022 mean_var=64.8548+/-13.836, 0's: 0 Z-trim(113.4): 54 B-trim: 1164 in 1/51 Lambda= 0.159259 statistics sampled from 22625 (22675) to 22625 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.648), E-opt: 0.2 (0.266), width: 16 Scan time: 7.570 The best scores are: opt bits E(85289) NP_077025 (OMIM: 252010,612360) NADH dehydrogenase ( 345) 2333 544.8 1e-154 XP_006723683 (OMIM: 252010,612360) PREDICTED: NADH ( 247) 1609 378.3 9.6e-105 XP_011527644 (OMIM: 252010,612360) PREDICTED: NADH ( 299) 1609 378.4 1.1e-104 XP_006723685 (OMIM: 252010,612360) PREDICTED: NADH ( 188) 1267 299.6 3.5e-81 XP_006723686 (OMIM: 252010,612360) PREDICTED: NADH ( 188) 1267 299.6 3.5e-81 XP_006723687 (OMIM: 252010,612360) PREDICTED: NADH ( 188) 1267 299.6 3.5e-81 XP_016883550 (OMIM: 252010,612360) PREDICTED: NADH ( 188) 1267 299.6 3.5e-81 XP_011527646 (OMIM: 252010,612360) PREDICTED: NADH ( 222) 1267 299.7 4e-81 NP_001034464 (OMIM: 252010,612360) NADH dehydrogen ( 317) 1267 299.8 5.2e-81 XP_011514081 (OMIM: 615733) PREDICTED: probable 18 ( 248) 149 42.9 0.00092 XP_011514080 (OMIM: 615733) PREDICTED: probable 18 ( 271) 149 42.9 0.00098 NP_059998 (OMIM: 615733) probable 18S rRNA (guanin ( 281) 149 42.9 0.001 NP_001189489 (OMIM: 615733) probable 18S rRNA (gua ( 298) 149 42.9 0.001 XP_006715910 (OMIM: 615733) PREDICTED: probable 18 ( 304) 149 42.9 0.0011 >>NP_077025 (OMIM: 252010,612360) NADH dehydrogenase [ub (345 aa) initn: 2333 init1: 2333 opt: 2333 Z-score: 2898.6 bits: 544.8 E(85289): 1e-154 Smith-Waterman score: 2333; 100.0% identity (100.0% similar) in 345 aa overlap (1-345:1-345) 10 20 30 40 50 60 pF1KE3 MLRPAGLWRLCRRPWAARVPAENLGRREVTSGVSPRGSTSPRTLNIFDRDLKRKQKNWAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_077 MLRPAGLWRLCRRPWAARVPAENLGRREVTSGVSPRGSTSPRTLNIFDRDLKRKQKNWAA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 RQPEPTKFDYLKEEVGSRIADRVYDIPRNFPLALDLGCGRGYIAQYLNKETIGKFFQADI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_077 RQPEPTKFDYLKEEVGSRIADRVYDIPRNFPLALDLGCGRGYIAQYLNKETIGKFFQADI 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 AENALKNSSETEIPTVSVLADEEFLPFKENTFDLVVSSLSLHWVNDLPRALEQIHYILKP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_077 AENALKNSSETEIPTVSVLADEEFLPFKENTFDLVVSSLSLHWVNDLPRALEQIHYILKP 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 DGVFIGAMFGGDTLYELRCSLQLAETEREGGFSPHISPFTAVNDLGHLLGRAGFNTLTVD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_077 DGVFIGAMFGGDTLYELRCSLQLAETEREGGFSPHISPFTAVNDLGHLLGRAGFNTLTVD 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE3 TDEIQVNYPGMFELMEDLQGMGESNCAWNRKALLHRDTMLAAAAVYREMYRNEDGSVPAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_077 TDEIQVNYPGMFELMEDLQGMGESNCAWNRKALLHRDTMLAAAAVYREMYRNEDGSVPAT 250 260 270 280 290 300 310 320 330 340 pF1KE3 YQIYYMIGWKYHESQARPAERGSATVSFGELGKINNLMPPGKKSQ ::::::::::::::::::::::::::::::::::::::::::::: NP_077 YQIYYMIGWKYHESQARPAERGSATVSFGELGKINNLMPPGKKSQ 310 320 330 340 >>XP_006723683 (OMIM: 252010,612360) PREDICTED: NADH deh (247 aa) initn: 1609 init1: 1609 opt: 1609 Z-score: 2001.5 bits: 378.3 E(85289): 9.6e-105 Smith-Waterman score: 1609; 100.0% identity (100.0% similar) in 239 aa overlap (1-239:1-239) 10 20 30 40 50 60 pF1KE3 MLRPAGLWRLCRRPWAARVPAENLGRREVTSGVSPRGSTSPRTLNIFDRDLKRKQKNWAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 MLRPAGLWRLCRRPWAARVPAENLGRREVTSGVSPRGSTSPRTLNIFDRDLKRKQKNWAA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 RQPEPTKFDYLKEEVGSRIADRVYDIPRNFPLALDLGCGRGYIAQYLNKETIGKFFQADI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 RQPEPTKFDYLKEEVGSRIADRVYDIPRNFPLALDLGCGRGYIAQYLNKETIGKFFQADI 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 AENALKNSSETEIPTVSVLADEEFLPFKENTFDLVVSSLSLHWVNDLPRALEQIHYILKP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 AENALKNSSETEIPTVSVLADEEFLPFKENTFDLVVSSLSLHWVNDLPRALEQIHYILKP 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 DGVFIGAMFGGDTLYELRCSLQLAETEREGGFSPHISPFTAVNDLGHLLGRAGFNTLTVD ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 DGVFIGAMFGGDTLYELRCSLQLAETEREGGFSPHISPFTAVNDLGHLLGRAGFNTLTVG 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE3 TDEIQVNYPGMFELMEDLQGMGESNCAWNRKALLHRDTMLAAAAVYREMYRNEDGSVPAT XP_006 KALIDNV >>XP_011527644 (OMIM: 252010,612360) PREDICTED: NADH deh (299 aa) initn: 1609 init1: 1609 opt: 1609 Z-score: 2000.4 bits: 378.4 E(85289): 1.1e-104 Smith-Waterman score: 1609; 100.0% identity (100.0% similar) in 239 aa overlap (1-239:1-239) 10 20 30 40 50 60 pF1KE3 MLRPAGLWRLCRRPWAARVPAENLGRREVTSGVSPRGSTSPRTLNIFDRDLKRKQKNWAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 MLRPAGLWRLCRRPWAARVPAENLGRREVTSGVSPRGSTSPRTLNIFDRDLKRKQKNWAA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 RQPEPTKFDYLKEEVGSRIADRVYDIPRNFPLALDLGCGRGYIAQYLNKETIGKFFQADI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 RQPEPTKFDYLKEEVGSRIADRVYDIPRNFPLALDLGCGRGYIAQYLNKETIGKFFQADI 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 AENALKNSSETEIPTVSVLADEEFLPFKENTFDLVVSSLSLHWVNDLPRALEQIHYILKP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 AENALKNSSETEIPTVSVLADEEFLPFKENTFDLVVSSLSLHWVNDLPRALEQIHYILKP 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 DGVFIGAMFGGDTLYELRCSLQLAETEREGGFSPHISPFTAVNDLGHLLGRAGFNTLTVD ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 DGVFIGAMFGGDTLYELRCSLQLAETEREGGFSPHISPFTAVNDLGHLLGRAGFNTLTVK 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE3 TDEIQVNYPGMFELMEDLQGMGESNCAWNRKALLHRDTMLAAAAVYREMYRNEDGSVPAT XP_011 QGAWASRAPDVGKEPPGREELTGWRTRLGTEENPGGFTPVTSVDLLLTFKWPESIETAS 250 260 270 280 290 >>XP_006723685 (OMIM: 252010,612360) PREDICTED: NADH deh (188 aa) initn: 1267 init1: 1267 opt: 1267 Z-score: 1578.4 bits: 299.6 E(85289): 3.5e-81 Smith-Waterman score: 1267; 99.5% identity (99.5% similar) in 187 aa overlap (159-345:2-188) 130 140 150 160 170 180 pF1KE3 SETEIPTVSVLADEEFLPFKENTFDLVVSSLSLHWVNDLPRALEQIHYILKPDGVFIGAM : :::::::::::::::::::::::::::: XP_006 MLCLHWVNDLPRALEQIHYILKPDGVFIGAM 10 20 30 190 200 210 220 230 240 pF1KE3 FGGDTLYELRCSLQLAETEREGGFSPHISPFTAVNDLGHLLGRAGFNTLTVDTDEIQVNY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 FGGDTLYELRCSLQLAETEREGGFSPHISPFTAVNDLGHLLGRAGFNTLTVDTDEIQVNY 40 50 60 70 80 90 250 260 270 280 290 300 pF1KE3 PGMFELMEDLQGMGESNCAWNRKALLHRDTMLAAAAVYREMYRNEDGSVPATYQIYYMIG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 PGMFELMEDLQGMGESNCAWNRKALLHRDTMLAAAAVYREMYRNEDGSVPATYQIYYMIG 100 110 120 130 140 150 310 320 330 340 pF1KE3 WKYHESQARPAERGSATVSFGELGKINNLMPPGKKSQ ::::::::::::::::::::::::::::::::::::: XP_006 WKYHESQARPAERGSATVSFGELGKINNLMPPGKKSQ 160 170 180 >>XP_006723686 (OMIM: 252010,612360) PREDICTED: NADH deh (188 aa) initn: 1267 init1: 1267 opt: 1267 Z-score: 1578.4 bits: 299.6 E(85289): 3.5e-81 Smith-Waterman score: 1267; 99.5% identity (99.5% similar) in 187 aa overlap (159-345:2-188) 130 140 150 160 170 180 pF1KE3 SETEIPTVSVLADEEFLPFKENTFDLVVSSLSLHWVNDLPRALEQIHYILKPDGVFIGAM : :::::::::::::::::::::::::::: XP_006 MLCLHWVNDLPRALEQIHYILKPDGVFIGAM 10 20 30 190 200 210 220 230 240 pF1KE3 FGGDTLYELRCSLQLAETEREGGFSPHISPFTAVNDLGHLLGRAGFNTLTVDTDEIQVNY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 FGGDTLYELRCSLQLAETEREGGFSPHISPFTAVNDLGHLLGRAGFNTLTVDTDEIQVNY 40 50 60 70 80 90 250 260 270 280 290 300 pF1KE3 PGMFELMEDLQGMGESNCAWNRKALLHRDTMLAAAAVYREMYRNEDGSVPATYQIYYMIG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 PGMFELMEDLQGMGESNCAWNRKALLHRDTMLAAAAVYREMYRNEDGSVPATYQIYYMIG 100 110 120 130 140 150 310 320 330 340 pF1KE3 WKYHESQARPAERGSATVSFGELGKINNLMPPGKKSQ ::::::::::::::::::::::::::::::::::::: XP_006 WKYHESQARPAERGSATVSFGELGKINNLMPPGKKSQ 160 170 180 >>XP_006723687 (OMIM: 252010,612360) PREDICTED: NADH deh (188 aa) initn: 1267 init1: 1267 opt: 1267 Z-score: 1578.4 bits: 299.6 E(85289): 3.5e-81 Smith-Waterman score: 1267; 99.5% identity (99.5% similar) in 187 aa overlap (159-345:2-188) 130 140 150 160 170 180 pF1KE3 SETEIPTVSVLADEEFLPFKENTFDLVVSSLSLHWVNDLPRALEQIHYILKPDGVFIGAM : :::::::::::::::::::::::::::: XP_006 MLCLHWVNDLPRALEQIHYILKPDGVFIGAM 10 20 30 190 200 210 220 230 240 pF1KE3 FGGDTLYELRCSLQLAETEREGGFSPHISPFTAVNDLGHLLGRAGFNTLTVDTDEIQVNY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 FGGDTLYELRCSLQLAETEREGGFSPHISPFTAVNDLGHLLGRAGFNTLTVDTDEIQVNY 40 50 60 70 80 90 250 260 270 280 290 300 pF1KE3 PGMFELMEDLQGMGESNCAWNRKALLHRDTMLAAAAVYREMYRNEDGSVPATYQIYYMIG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 PGMFELMEDLQGMGESNCAWNRKALLHRDTMLAAAAVYREMYRNEDGSVPATYQIYYMIG 100 110 120 130 140 150 310 320 330 340 pF1KE3 WKYHESQARPAERGSATVSFGELGKINNLMPPGKKSQ ::::::::::::::::::::::::::::::::::::: XP_006 WKYHESQARPAERGSATVSFGELGKINNLMPPGKKSQ 160 170 180 >>XP_016883550 (OMIM: 252010,612360) PREDICTED: NADH deh (188 aa) initn: 1267 init1: 1267 opt: 1267 Z-score: 1578.4 bits: 299.6 E(85289): 3.5e-81 Smith-Waterman score: 1267; 99.5% identity (99.5% similar) in 187 aa overlap (159-345:2-188) 130 140 150 160 170 180 pF1KE3 SETEIPTVSVLADEEFLPFKENTFDLVVSSLSLHWVNDLPRALEQIHYILKPDGVFIGAM : :::::::::::::::::::::::::::: XP_016 MLCLHWVNDLPRALEQIHYILKPDGVFIGAM 10 20 30 190 200 210 220 230 240 pF1KE3 FGGDTLYELRCSLQLAETEREGGFSPHISPFTAVNDLGHLLGRAGFNTLTVDTDEIQVNY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 FGGDTLYELRCSLQLAETEREGGFSPHISPFTAVNDLGHLLGRAGFNTLTVDTDEIQVNY 40 50 60 70 80 90 250 260 270 280 290 300 pF1KE3 PGMFELMEDLQGMGESNCAWNRKALLHRDTMLAAAAVYREMYRNEDGSVPATYQIYYMIG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 PGMFELMEDLQGMGESNCAWNRKALLHRDTMLAAAAVYREMYRNEDGSVPATYQIYYMIG 100 110 120 130 140 150 310 320 330 340 pF1KE3 WKYHESQARPAERGSATVSFGELGKINNLMPPGKKSQ ::::::::::::::::::::::::::::::::::::: XP_016 WKYHESQARPAERGSATVSFGELGKINNLMPPGKKSQ 160 170 180 >>XP_011527646 (OMIM: 252010,612360) PREDICTED: NADH deh (222 aa) initn: 1267 init1: 1267 opt: 1267 Z-score: 1577.4 bits: 299.7 E(85289): 4e-81 Smith-Waterman score: 1267; 99.5% identity (99.5% similar) in 187 aa overlap (159-345:36-222) 130 140 150 160 170 180 pF1KE3 SETEIPTVSVLADEEFLPFKENTFDLVVSSLSLHWVNDLPRALEQIHYILKPDGVFIGAM : :::::::::::::::::::::::::::: XP_011 QGPLLLSRSLLVQIFKKLLESFSKLTLQKMLCLHWVNDLPRALEQIHYILKPDGVFIGAM 10 20 30 40 50 60 190 200 210 220 230 240 pF1KE3 FGGDTLYELRCSLQLAETEREGGFSPHISPFTAVNDLGHLLGRAGFNTLTVDTDEIQVNY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 FGGDTLYELRCSLQLAETEREGGFSPHISPFTAVNDLGHLLGRAGFNTLTVDTDEIQVNY 70 80 90 100 110 120 250 260 270 280 290 300 pF1KE3 PGMFELMEDLQGMGESNCAWNRKALLHRDTMLAAAAVYREMYRNEDGSVPATYQIYYMIG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 PGMFELMEDLQGMGESNCAWNRKALLHRDTMLAAAAVYREMYRNEDGSVPATYQIYYMIG 130 140 150 160 170 180 310 320 330 340 pF1KE3 WKYHESQARPAERGSATVSFGELGKINNLMPPGKKSQ ::::::::::::::::::::::::::::::::::::: XP_011 WKYHESQARPAERGSATVSFGELGKINNLMPPGKKSQ 190 200 210 220 >>NP_001034464 (OMIM: 252010,612360) NADH dehydrogenase (317 aa) initn: 2013 init1: 1267 opt: 1267 Z-score: 1575.4 bits: 299.8 E(85289): 5.2e-81 Smith-Waterman score: 1956; 86.4% identity (89.3% similar) in 345 aa overlap (1-345:1-317) 10 20 30 40 50 60 pF1KE3 MLRPAGLWRLCRRPWAARVPAENLGRREVTSGVSPRGSTSPRTLNIFDRDLKRKQKNWAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MLRPAGLWRLCRRPWAARVPAENLGRREVTSGVSPRGSTSPRTLNIFDRDLKRKQKNWAA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 RQPEPTKFDYLKEEVGSRIADRVYDIPRNFPLALDLGCGRGYIAQYLNKETIGKFFQADI ::::::::::::::::::::::::::::::::::::::::::::::::: ..:. NP_001 RQPEPTKFDYLKEEVGSRIADRVYDIPRNFPLALDLGCGRGYIAQYLNKL---QLFHC-- 70 80 90 100 110 130 140 150 160 170 180 pF1KE3 AENALKNSSETEIPTVSVLADEEFLPFKENTFDLVVSSLSLHWVNDLPRALEQIHYILKP .. :.. :. . . : :::::::::::::::::::: NP_001 -RKLLESFSKLTLQKM----------------------LCLHWVNDLPRALEQIHYILKP 120 130 140 150 190 200 210 220 230 240 pF1KE3 DGVFIGAMFGGDTLYELRCSLQLAETEREGGFSPHISPFTAVNDLGHLLGRAGFNTLTVD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 DGVFIGAMFGGDTLYELRCSLQLAETEREGGFSPHISPFTAVNDLGHLLGRAGFNTLTVD 160 170 180 190 200 210 250 260 270 280 290 300 pF1KE3 TDEIQVNYPGMFELMEDLQGMGESNCAWNRKALLHRDTMLAAAAVYREMYRNEDGSVPAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 TDEIQVNYPGMFELMEDLQGMGESNCAWNRKALLHRDTMLAAAAVYREMYRNEDGSVPAT 220 230 240 250 260 270 310 320 330 340 pF1KE3 YQIYYMIGWKYHESQARPAERGSATVSFGELGKINNLMPPGKKSQ ::::::::::::::::::::::::::::::::::::::::::::: NP_001 YQIYYMIGWKYHESQARPAERGSATVSFGELGKINNLMPPGKKSQ 280 290 300 310 >>XP_011514081 (OMIM: 615733) PREDICTED: probable 18S rR (248 aa) initn: 66 init1: 66 opt: 149 Z-score: 188.6 bits: 42.9 E(85289): 0.00092 Smith-Waterman score: 149; 30.5% identity (61.0% similar) in 105 aa overlap (74-172:34-136) 50 60 70 80 90 pF1KE3 LNIFDRDLKRKQKNWAARQPEPTKFDYLKEEVGSRIADRVYDI---PRNFP-LALDLGCG .. .:.: :. .. :.: : ::.::: XP_011 RGRRPEHGGPPELFYDETEARKYVRNSRMIDIQTRMAGRALELLYLPENKPCYLLDIGCG 10 20 30 40 50 60 100 110 120 130 140 150 pF1KE3 RGYIAQYLNKETIGKFFQA-DIAENALKNSSETEIPTVSVLADE-EFLPFKENTFDLVVS : ..::. : :... . ::. : .. . :: .:.: . .::: .::: .: XP_011 TGLSGSYLSDE--GHYWVGLDISPAMLDEAVDREIEGDLLLGDMGQGIPFKPGTFDGCIS 70 80 90 100 110 120 160 170 180 190 200 210 pF1KE3 SLSLHWVNDLPRALEQIHYILKPDGVFIGAMFGGDTLYELRCSLQLAETEREGGFSPHIS ...:. . . : XP_011 ISAVQWLCNANKKSENPAKRLYCFFASLFSVLVRGSRAVLQLYPENSEQLELITTQATKA 130 140 150 160 170 180 345 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 13:07:20 2016 done: Sun Nov 6 13:07:22 2016 Total Scan time: 7.570 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]