FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3135, 345 aa 1>>>pF1KE3135 345 - 345 aa - 345 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.1229+/-0.000824; mu= 17.1344+/- 0.049 mean_var=62.3048+/-12.718, 0's: 0 Z-trim(106.6): 25 B-trim: 464 in 1/48 Lambda= 0.162485 statistics sampled from 9052 (9064) to 9052 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.66), E-opt: 0.2 (0.278), width: 16 Scan time: 2.280 The best scores are: opt bits E(32554) CCDS13118.1 NDUFAF5 gene_id:79133|Hs108|chr20 ( 345) 2333 555.4 2.5e-158 CCDS33441.1 NDUFAF5 gene_id:79133|Hs108|chr20 ( 317) 1267 305.5 3.9e-83 >>CCDS13118.1 NDUFAF5 gene_id:79133|Hs108|chr20 (345 aa) initn: 2333 init1: 2333 opt: 2333 Z-score: 2956.0 bits: 555.4 E(32554): 2.5e-158 Smith-Waterman score: 2333; 100.0% identity (100.0% similar) in 345 aa overlap (1-345:1-345) 10 20 30 40 50 60 pF1KE3 MLRPAGLWRLCRRPWAARVPAENLGRREVTSGVSPRGSTSPRTLNIFDRDLKRKQKNWAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 MLRPAGLWRLCRRPWAARVPAENLGRREVTSGVSPRGSTSPRTLNIFDRDLKRKQKNWAA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 RQPEPTKFDYLKEEVGSRIADRVYDIPRNFPLALDLGCGRGYIAQYLNKETIGKFFQADI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 RQPEPTKFDYLKEEVGSRIADRVYDIPRNFPLALDLGCGRGYIAQYLNKETIGKFFQADI 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 AENALKNSSETEIPTVSVLADEEFLPFKENTFDLVVSSLSLHWVNDLPRALEQIHYILKP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 AENALKNSSETEIPTVSVLADEEFLPFKENTFDLVVSSLSLHWVNDLPRALEQIHYILKP 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 DGVFIGAMFGGDTLYELRCSLQLAETEREGGFSPHISPFTAVNDLGHLLGRAGFNTLTVD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 DGVFIGAMFGGDTLYELRCSLQLAETEREGGFSPHISPFTAVNDLGHLLGRAGFNTLTVD 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE3 TDEIQVNYPGMFELMEDLQGMGESNCAWNRKALLHRDTMLAAAAVYREMYRNEDGSVPAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 TDEIQVNYPGMFELMEDLQGMGESNCAWNRKALLHRDTMLAAAAVYREMYRNEDGSVPAT 250 260 270 280 290 300 310 320 330 340 pF1KE3 YQIYYMIGWKYHESQARPAERGSATVSFGELGKINNLMPPGKKSQ ::::::::::::::::::::::::::::::::::::::::::::: CCDS13 YQIYYMIGWKYHESQARPAERGSATVSFGELGKINNLMPPGKKSQ 310 320 330 340 >>CCDS33441.1 NDUFAF5 gene_id:79133|Hs108|chr20 (317 aa) initn: 2013 init1: 1267 opt: 1267 Z-score: 1606.0 bits: 305.5 E(32554): 3.9e-83 Smith-Waterman score: 1956; 86.4% identity (89.3% similar) in 345 aa overlap (1-345:1-317) 10 20 30 40 50 60 pF1KE3 MLRPAGLWRLCRRPWAARVPAENLGRREVTSGVSPRGSTSPRTLNIFDRDLKRKQKNWAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS33 MLRPAGLWRLCRRPWAARVPAENLGRREVTSGVSPRGSTSPRTLNIFDRDLKRKQKNWAA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 RQPEPTKFDYLKEEVGSRIADRVYDIPRNFPLALDLGCGRGYIAQYLNKETIGKFFQADI ::::::::::::::::::::::::::::::::::::::::::::::::: ..:. CCDS33 RQPEPTKFDYLKEEVGSRIADRVYDIPRNFPLALDLGCGRGYIAQYLNKL---QLFHC-- 70 80 90 100 110 130 140 150 160 170 180 pF1KE3 AENALKNSSETEIPTVSVLADEEFLPFKENTFDLVVSSLSLHWVNDLPRALEQIHYILKP .. :.. :. . . : :::::::::::::::::::: CCDS33 -RKLLESFSKLTLQKM----------------------LCLHWVNDLPRALEQIHYILKP 120 130 140 150 190 200 210 220 230 240 pF1KE3 DGVFIGAMFGGDTLYELRCSLQLAETEREGGFSPHISPFTAVNDLGHLLGRAGFNTLTVD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS33 DGVFIGAMFGGDTLYELRCSLQLAETEREGGFSPHISPFTAVNDLGHLLGRAGFNTLTVD 160 170 180 190 200 210 250 260 270 280 290 300 pF1KE3 TDEIQVNYPGMFELMEDLQGMGESNCAWNRKALLHRDTMLAAAAVYREMYRNEDGSVPAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS33 TDEIQVNYPGMFELMEDLQGMGESNCAWNRKALLHRDTMLAAAAVYREMYRNEDGSVPAT 220 230 240 250 260 270 310 320 330 340 pF1KE3 YQIYYMIGWKYHESQARPAERGSATVSFGELGKINNLMPPGKKSQ ::::::::::::::::::::::::::::::::::::::::::::: CCDS33 YQIYYMIGWKYHESQARPAERGSATVSFGELGKINNLMPPGKKSQ 280 290 300 310 345 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 13:07:20 2016 done: Sun Nov 6 13:07:20 2016 Total Scan time: 2.280 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]