FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6509, 176 aa 1>>>pF1KE6509 176 - 176 aa - 176 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.1887+/-0.000345; mu= 12.7876+/- 0.021 mean_var=56.6701+/-11.827, 0's: 0 Z-trim(114.6): 6 B-trim: 886 in 1/49 Lambda= 0.170372 statistics sampled from 24550 (24556) to 24550 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.674), E-opt: 0.2 (0.288), width: 16 Scan time: 4.060 The best scores are: opt bits E(85289) NP_036541 (OMIM: 604263) prion-like protein doppel ( 176) 1229 309.9 1.4e-84 NP_001073592 (OMIM: 123400,137440,176640,245300,60 ( 253) 151 45.0 0.00011 NP_001073590 (OMIM: 123400,137440,176640,245300,60 ( 253) 151 45.0 0.00011 NP_000302 (OMIM: 123400,137440,176640,245300,60007 ( 253) 151 45.0 0.00011 NP_898902 (OMIM: 123400,137440,176640,245300,60007 ( 253) 151 45.0 0.00011 NP_001073591 (OMIM: 123400,137440,176640,245300,60 ( 253) 151 45.0 0.00011 >>NP_036541 (OMIM: 604263) prion-like protein doppel pre (176 aa) initn: 1229 init1: 1229 opt: 1229 Z-score: 1639.7 bits: 309.9 E(85289): 1.4e-84 Smith-Waterman score: 1229; 99.4% identity (99.4% similar) in 176 aa overlap (1-176:1-176) 10 20 30 40 50 60 pF1KE6 MRKHLSWWWLATVCMLLFSHLSAVQTRGIKHRIKWNRKALPSTAQITEAQVAENRPGAFI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_036 MRKHLSWWWLATVCMLLFSHLSAVQTRGIKHRIKWNRKALPSTAQITEAQVAENRPGAFI 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 KQGRKLDIDFGAEGNRYYEANYWQFPDGIHYNGCSEANVTKEAFVTGCINATQAANQGEF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_036 KQGRKLDIDFGAEGNRYYEANYWQFPDGIHYNGCSEANVTKEAFVTGCINATQAANQGEF 70 80 90 100 110 120 130 140 150 160 170 pF1KE6 QKPDNKLHQQVLWRLVQELCSLKHCEFWLERGAGLRVTMHQPVLLCLLALIWLMVK ::::::::::::::::::::::::::::::::::::::::::::::::::::: :: NP_036 QKPDNKLHQQVLWRLVQELCSLKHCEFWLERGAGLRVTMHQPVLLCLLALIWLTVK 130 140 150 160 170 >>NP_001073592 (OMIM: 123400,137440,176640,245300,600072 (253 aa) initn: 119 init1: 55 opt: 151 Z-score: 205.2 bits: 45.0 E(85289): 0.00011 Smith-Waterman score: 151; 25.9% identity (54.9% similar) in 162 aa overlap (34-175:98-252) 10 20 30 40 50 60 pF1KE6 HLSWWWLATVCMLLFSHLSAVQTRGIKHRIKWNRKALPSTAQITEAQVAENRPGAFIKQ- .::. . :.: . : .: :: . NP_001 PHGGGWGQPHGGGWGQPHGGGWGQGGGTHSQWNKPSKPKTNMKHMAGAAAA--GAVVGGL 70 80 90 100 110 120 70 80 90 100 110 pF1KE6 -GRKLD-------IDFGAEG-NRYYEANYWQFPDGIHYNGCSEANVTKEAFVTGCINAT- : : : ::.. .:::. :. ..:. ..: .: . ... :: :.: : NP_001 GGYMLGSAMSRPIIHFGSDYEDRYYRENMHRYPNQVYYRPMDEYS-NQNNFVHDCVNITI 130 140 150 160 170 180 120 130 140 150 160 pF1KE6 -----QAANQGE-FQKPDNKLHQQVLWRLVQELCSLKH---CEFWLERGAGLRVTMHQPV ....:: : . : :. . :.:...: .. . . .::... . :: NP_001 KQHTVTTTTKGENFTETDVKMME----RVVEQMCITQYERESQAYYQRGSSMVLFSSPPV 190 200 210 220 230 240 170 pF1KE6 LLCLLALIWLMVK .: . ::.:.: NP_001 ILLISFLIFLIVG 250 >>NP_001073590 (OMIM: 123400,137440,176640,245300,600072 (253 aa) initn: 119 init1: 55 opt: 151 Z-score: 205.2 bits: 45.0 E(85289): 0.00011 Smith-Waterman score: 151; 25.9% identity (54.9% similar) in 162 aa overlap (34-175:98-252) 10 20 30 40 50 60 pF1KE6 HLSWWWLATVCMLLFSHLSAVQTRGIKHRIKWNRKALPSTAQITEAQVAENRPGAFIKQ- .::. . :.: . : .: :: . NP_001 PHGGGWGQPHGGGWGQPHGGGWGQGGGTHSQWNKPSKPKTNMKHMAGAAAA--GAVVGGL 70 80 90 100 110 120 70 80 90 100 110 pF1KE6 -GRKLD-------IDFGAEG-NRYYEANYWQFPDGIHYNGCSEANVTKEAFVTGCINAT- : : : ::.. .:::. :. ..:. ..: .: . ... :: :.: : NP_001 GGYMLGSAMSRPIIHFGSDYEDRYYRENMHRYPNQVYYRPMDEYS-NQNNFVHDCVNITI 130 140 150 160 170 180 120 130 140 150 160 pF1KE6 -----QAANQGE-FQKPDNKLHQQVLWRLVQELCSLKH---CEFWLERGAGLRVTMHQPV ....:: : . : :. . :.:...: .. . . .::... . :: NP_001 KQHTVTTTTKGENFTETDVKMME----RVVEQMCITQYERESQAYYQRGSSMVLFSSPPV 190 200 210 220 230 240 170 pF1KE6 LLCLLALIWLMVK .: . ::.:.: NP_001 ILLISFLIFLIVG 250 >>NP_000302 (OMIM: 123400,137440,176640,245300,600072,60 (253 aa) initn: 119 init1: 55 opt: 151 Z-score: 205.2 bits: 45.0 E(85289): 0.00011 Smith-Waterman score: 151; 25.9% identity (54.9% similar) in 162 aa overlap (34-175:98-252) 10 20 30 40 50 60 pF1KE6 HLSWWWLATVCMLLFSHLSAVQTRGIKHRIKWNRKALPSTAQITEAQVAENRPGAFIKQ- .::. . :.: . : .: :: . NP_000 PHGGGWGQPHGGGWGQPHGGGWGQGGGTHSQWNKPSKPKTNMKHMAGAAAA--GAVVGGL 70 80 90 100 110 120 70 80 90 100 110 pF1KE6 -GRKLD-------IDFGAEG-NRYYEANYWQFPDGIHYNGCSEANVTKEAFVTGCINAT- : : : ::.. .:::. :. ..:. ..: .: . ... :: :.: : NP_000 GGYMLGSAMSRPIIHFGSDYEDRYYRENMHRYPNQVYYRPMDEYS-NQNNFVHDCVNITI 130 140 150 160 170 180 120 130 140 150 160 pF1KE6 -----QAANQGE-FQKPDNKLHQQVLWRLVQELCSLKH---CEFWLERGAGLRVTMHQPV ....:: : . : :. . :.:...: .. . . .::... . :: NP_000 KQHTVTTTTKGENFTETDVKMME----RVVEQMCITQYERESQAYYQRGSSMVLFSSPPV 190 200 210 220 230 240 170 pF1KE6 LLCLLALIWLMVK .: . ::.:.: NP_000 ILLISFLIFLIVG 250 >>NP_898902 (OMIM: 123400,137440,176640,245300,600072,60 (253 aa) initn: 119 init1: 55 opt: 151 Z-score: 205.2 bits: 45.0 E(85289): 0.00011 Smith-Waterman score: 151; 25.9% identity (54.9% similar) in 162 aa overlap (34-175:98-252) 10 20 30 40 50 60 pF1KE6 HLSWWWLATVCMLLFSHLSAVQTRGIKHRIKWNRKALPSTAQITEAQVAENRPGAFIKQ- .::. . :.: . : .: :: . NP_898 PHGGGWGQPHGGGWGQPHGGGWGQGGGTHSQWNKPSKPKTNMKHMAGAAAA--GAVVGGL 70 80 90 100 110 120 70 80 90 100 110 pF1KE6 -GRKLD-------IDFGAEG-NRYYEANYWQFPDGIHYNGCSEANVTKEAFVTGCINAT- : : : ::.. .:::. :. ..:. ..: .: . ... :: :.: : NP_898 GGYMLGSAMSRPIIHFGSDYEDRYYRENMHRYPNQVYYRPMDEYS-NQNNFVHDCVNITI 130 140 150 160 170 180 120 130 140 150 160 pF1KE6 -----QAANQGE-FQKPDNKLHQQVLWRLVQELCSLKH---CEFWLERGAGLRVTMHQPV ....:: : . : :. . :.:...: .. . . .::... . :: NP_898 KQHTVTTTTKGENFTETDVKMME----RVVEQMCITQYERESQAYYQRGSSMVLFSSPPV 190 200 210 220 230 240 170 pF1KE6 LLCLLALIWLMVK .: . ::.:.: NP_898 ILLISFLIFLIVG 250 >>NP_001073591 (OMIM: 123400,137440,176640,245300,600072 (253 aa) initn: 119 init1: 55 opt: 151 Z-score: 205.2 bits: 45.0 E(85289): 0.00011 Smith-Waterman score: 151; 25.9% identity (54.9% similar) in 162 aa overlap (34-175:98-252) 10 20 30 40 50 60 pF1KE6 HLSWWWLATVCMLLFSHLSAVQTRGIKHRIKWNRKALPSTAQITEAQVAENRPGAFIKQ- .::. . :.: . : .: :: . NP_001 PHGGGWGQPHGGGWGQPHGGGWGQGGGTHSQWNKPSKPKTNMKHMAGAAAA--GAVVGGL 70 80 90 100 110 120 70 80 90 100 110 pF1KE6 -GRKLD-------IDFGAEG-NRYYEANYWQFPDGIHYNGCSEANVTKEAFVTGCINAT- : : : ::.. .:::. :. ..:. ..: .: . ... :: :.: : NP_001 GGYMLGSAMSRPIIHFGSDYEDRYYRENMHRYPNQVYYRPMDEYS-NQNNFVHDCVNITI 130 140 150 160 170 180 120 130 140 150 160 pF1KE6 -----QAANQGE-FQKPDNKLHQQVLWRLVQELCSLKH---CEFWLERGAGLRVTMHQPV ....:: : . : :. . :.:...: .. . . .::... . :: NP_001 KQHTVTTTTKGENFTETDVKMME----RVVEQMCITQYERESQAYYQRGSSMVLFSSPPV 190 200 210 220 230 240 170 pF1KE6 LLCLLALIWLMVK .: . ::.:.: NP_001 ILLISFLIFLIVG 250 176 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 13:57:05 2016 done: Tue Nov 8 13:57:05 2016 Total Scan time: 4.060 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]