FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE2017, 594 aa 1>>>pF1KE2017 594 - 594 aa - 594 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 8.7272+/-0.0012; mu= 5.0065+/- 0.072 mean_var=224.1783+/-44.503, 0's: 0 Z-trim(107.9): 24 B-trim: 23 in 1/53 Lambda= 0.085660 statistics sampled from 9852 (9863) to 9852 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.644), E-opt: 0.2 (0.303), width: 16 Scan time: 3.310 The best scores are: opt bits E(32554) CCDS13030.1 NOP56 gene_id:10528|Hs108|chr20 ( 594) 3742 475.9 6.2e-134 CCDS2353.1 NOP58 gene_id:51602|Hs108|chr2 ( 529) 1130 153.1 8.5e-37 >>CCDS13030.1 NOP56 gene_id:10528|Hs108|chr20 (594 aa) initn: 3742 init1: 3742 opt: 3742 Z-score: 2518.0 bits: 475.9 E(32554): 6.2e-134 Smith-Waterman score: 3742; 99.5% identity (99.8% similar) in 594 aa overlap (1-594:1-594) 10 20 30 40 50 60 pF1KE2 MVLLHVLFEHAVGYALLALKEVEEISLLQPQVEESVLNLGKFHSIVRLVAFCPFASSQVA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 MVLLHVLFEHAVGYALLALKEVEEISLLQPQVEESVLNLGKFHSIVRLVAFCPFASSQVA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 LENANAVSEGVVHEDLRLLLETHLPSKKKKVLLGVGDPKIGAAIQEELGYNCQTGGVIAE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 LENANAVSEGVVHEDLRLLLETHLPSKKKKVLLGVGDPKIGAAIQEELGYNCQTGGVIAE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE2 VLRGVRLHFHNLVKGLTDLSACKAQLGLGHSYSRAKVKFNVNRVDNMIIQSISLLDQLDK .::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 ILRGVRLHFHNLVKGLTDLSACKAQLGLGHSYSRAKVKFNVNRVDNMIIQSISLLDQLDK 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE2 DINTFSMRVREWYGYHFPELVKIINDNATYCRLAQFIGNRRELNEDKLEKLEELTMDGAK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 DINTFSMRVREWYGYHFPELVKIINDNATYCRLAQFIGNRRELNEDKLEKLEELTMDGAK 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE2 AKAILDASRSSMGMDISAIDLINIESFSSRVVSLSEYRQSLHTYLRSKMSQVAPSLSALI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 AKAILDASRSSMGMDISAIDLINIESFSSRVVSLSEYRQSLHTYLRSKMSQVAPSLSALI 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE2 GEAVGARLIAHAGSLTNLAKYPASTVQILGAEKALFRALKTRGNTPKYGLIFHSTFIGRA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 GEAVGARLIAHAGSLTNLAKYPASTVQILGAEKALFRALKTRGNTPKYGLIFHSTFIGRA 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE2 AAKNKGRISRYLANKCSIASRIDCFSEVPTSVFGEKLREQVEERLSFYETGEIPRKNLDV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 AAKNKGRISRYLANKCSIASRIDCFSEVPTSVFGEKLREQVEERLSFYETGEIPRKNLDV 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE2 MKEAMVQAEEAAAEITRKLEKQEKKRLKKEKKRLAALALASSENSSSTPEECEETSEKPK :::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::: CCDS13 MKEAMVQAEEAAAEITRKLEKQEKKRLKKEKKRLAALALASSENSSSTPEECEEMSEKPK 430 440 450 460 470 480 490 500 510 520 530 540 pF1KE2 KKKKQKPQEVPQENGMEDPSISFSKPKKKKSFSKEELMSSDLEETAGSTSIPKRKKSTPK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 KKKKQKPQEVPQENGMEDPSISFSKPKKKKSFSKEELMSSDLEETAGSTSIPKRKKSTPK 490 500 510 520 530 540 550 560 570 580 590 pF1KE2 EETVNDPEEAGHRSGSKKKRKFSKEEPVSSGPEEAAGKSSSKKKKKFHKASQED :::::::::::::::::::::::::::::::::::.:::::::::::::::::: CCDS13 EETVNDPEEAGHRSGSKKKRKFSKEEPVSSGPEEAVGKSSSKKKKKFHKASQED 550 560 570 580 590 >>CCDS2353.1 NOP58 gene_id:51602|Hs108|chr2 (529 aa) initn: 1148 init1: 553 opt: 1130 Z-score: 774.1 bits: 153.1 E(32554): 8.5e-37 Smith-Waterman score: 1150; 40.2% identity (68.5% similar) in 533 aa overlap (6-515:3-524) 10 20 30 40 50 pF1KE2 MVLLHVLFEHAVGYALLAL---KEVEEISLLQPQVEESVLNLGKFHSIVRLVAFCPFASS :::: .::::.. . :...:.. : . : : ..::.: : : .. CCDS23 MLVLFETSVGYAIFKVLNEKKLQEVDSLWKEFETPE----KANKIVKLKHFEKFQDT 10 20 30 40 50 60 70 80 90 100 110 pF1KE2 QVALENANAVSEGVVHEDLRLLLETHLPSKKKKVLLGVGDPKIGAAIQEELGYNCQTGGV :: .:. :: ....:. .:. . :. . :.:.: :.:..:.:.:. .: . : CCDS23 AEALAAFTALMEGKINKQLKKVLKKIV--KEAHEPLAVADAKLGGVIKEKLNLSCIHSPV 60 70 80 90 100 110 120 130 140 150 160 170 pF1KE2 IAEVLRGVRLHFHNLVKGLTDLSACKAQLGLGHSYSRAKVKFNVNRVDNMIIQSISLLDQ . :..::.: .. .:. :. :::.:: :: ..::....::.::.:.:::::. CCDS23 VNELMRGIRSQMDGLIPGVEPREMAAMCLGLAHSLSRYRLKFSADKVDTMIVQAISLLDD 120 130 140 150 160 170 180 190 200 210 220 230 pF1KE2 LDKDINTFSMRVREWYGYHFPELVKIINDNATYCRLAQFIGNRRELNEDKLEKLEELTMD :::..:.. :: :::::.::::: :::.:: :::. : .:.:.. :: .: .. CCDS23 LDKELNNYIMRCREWYGWHFPELGKIISDNLTYCKCLQKVGDRKNYASAKLSELLPEEVE 180 190 200 210 220 230 240 250 260 270 280 290 pF1KE2 GAKAKAILDASRSSMGMDISAIDLINIESFSSRVVSLSEYRQSLHTYLRSKMSQVAPSLS :..:: :.. ::: ..: :. :: . ..:. .:::: .:. ::...: .::... CCDS23 -AEVKA---AAEISMGTEVSEEDICNILHLCTQVIEISEYRTQLYEYLQNRMMAIAPNVT 240 250 260 270 280 300 310 320 330 340 350 pF1KE2 ALIGEAVGARLIAHAGSLTNLAKYPASTVQILGAEKALFRALKTRGNTPKYGLIFHSTFI ...:: :::::::::::: ::::. ::::::::::::::::::.: .:::::::.:.... CCDS23 VMVGELVGARLIAHAGSLLNLAKHAASTVQILGAEKALFRALKSRRDTPKYGLIYHASLV 290 300 310 320 330 340 360 370 380 390 400 pF1KE2 GRAAAKNKGRISRYLANKCSIASRIDCFSEVPTSVFGEKLREQVEERLSFYE-------- :... :.::.:::.:: : .: : : :.: .:..: . : ..: :: : CCDS23 GQTSPKHKGKISRMLAAKTVLAIRYDAFGEDSSSAMGVENRAKLEARLRTLEDRGIRKIS 350 360 370 380 390 400 410 420 430 440 450 460 pF1KE2 -TGEIPRKNLDVMKEAMVQAEEAAAEIT-------RKLEKQEKKRLKKEKK-RLAALALA ::. :. ... :.. . ... : ::.:. .:. ::: . : . . CCDS23 GTGKALAKTEKYEHKSEVKTYDPSGDSTLPTCSKKRKIEQVDKEDEITEKKAKKAKIKVK 410 420 430 440 450 460 470 480 490 500 510 pF1KE2 SSENSSSTPEECEETSEKPKKKKKQKPQEVPQEN-GMEDP--SISFSKPKKKKSFSKEEL :. : :::: : ::::. : ... .: . :.: : ....:.:::. .:. CCDS23 VEEEEEEKVAEEEETSVK-KKKKRGKKKHIKEEPLSEEEPCTSTAIASPEKKKKKKKKRE 470 480 490 500 510 520 520 530 540 550 560 570 pF1KE2 MSSDLEETAGSTSIPKRKKSTPKEETVNDPEEAGHRSGSKKKRKFSKEEPVSSGPEEAAG CCDS23 NED 594 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 13:08:48 2016 done: Sun Nov 6 13:08:49 2016 Total Scan time: 3.310 Total Display time: 0.010 Function used was FASTA [36.3.4 Apr, 2011]