FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6460, 469 aa 1>>>pF1KE6460 469 - 469 aa - 469 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.2303+/-0.000875; mu= 18.6182+/- 0.052 mean_var=69.3908+/-14.381, 0's: 0 Z-trim(106.9): 22 B-trim: 0 in 0/50 Lambda= 0.153965 statistics sampled from 9225 (9241) to 9225 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.649), E-opt: 0.2 (0.284), width: 16 Scan time: 2.790 The best scores are: opt bits E(32554) CCDS13007.1 SLC52A3 gene_id:113278|Hs108|chr20 ( 469) 3130 704.4 6.6e-203 CCDS6423.1 SLC52A2 gene_id:79581|Hs108|chr8 ( 445) 544 129.9 5.2e-30 CCDS11066.1 SLC52A1 gene_id:55065|Hs108|chr17 ( 448) 530 126.8 4.5e-29 >>CCDS13007.1 SLC52A3 gene_id:113278|Hs108|chr20 (469 aa) initn: 3130 init1: 3130 opt: 3130 Z-score: 3756.3 bits: 704.4 E(32554): 6.6e-203 Smith-Waterman score: 3130; 99.4% identity (99.6% similar) in 469 aa overlap (1-469:1-469) 10 20 30 40 50 60 pF1KE6 MAFLMHLLVCVFGMGSWVTINGLWVELPLLVMELPEGWYLPSYLTVVIQLANIGPLLVTL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 MAFLMHLLVCVFGMGSWVTINGLWVELPLLVMELPEGWYLPSYLTVVIQLANIGPLLVTL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 LHHFRPSCLSEVPIIFTLLGVGTVTCIIFAFLWNMTSWVLDGHHSIAFLVLTFFLALVDC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 LHHFRPSCLSEVPIIFTLLGVGTVTCIIFAFLWNMTSWVLDGHHSIAFLVLTFFLALVDC 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 TSSVTFLPFMSRLPTYYLTTFFVGEGLSGLLPALVALAQGSGLTTCVNVTEISDSVPSPV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 TSSVTFLPFMSRLPTYYLTTFFVGEGLSGLLPALVALAQGSGLTTCVNVTEISDSVPSPV 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE6 PTRETDIAQGVPRALVSALPGMEAPLSHLESRYLPAHFSPLVFFLLLSIMMACCLVAFFV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 PTRETDIAQGVPRALVSALPGMEAPLSHLESRYLPAHFSPLVFFLLLSIMMACCLVAFFV 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE6 LQRQPRCWEASVEDLLNDQVTLHSIRLREENDLGPAGMVDSSQGQGYLEEKAAPCCPAHL :::::::::::::::::::::::::: :::::::::: :::::::::::::::::::::: CCDS13 LQRQPRCWEASVEDLLNDQVTLHSIRPREENDLGPAGTVDSSQGQGYLEEKAAPCCPAHL 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE6 AFVYTLVAFVNALTNGMLPSVQTYSCLSYGPVAYHLAATLSIVANPLASLVSMFLPNRSL ::.::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 AFIYTLVAFVNALTNGMLPSVQTYSCLSYGPVAYHLAATLSIVANPLASLVSMFLPNRSL 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE6 LFLGVLSVLGTCFGGYNMAMAVMSPCPLLQGHWGGEVLIVASWVLFSGCLSYVKVMLGVV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 LFLGVLSVLGTCFGGYNMAMAVMSPCPLLQGHWGGEVLIVASWVLFSGCLSYVKVMLGVV 370 380 390 400 410 420 430 440 450 460 pF1KE6 LRDLSRSALLWCGAAVQLGSLLGALLMFPLVNVLRLFSSADFCNLHCPA ::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 LRDLSRSALLWCGAAVQLGSLLGALLMFPLVNVLRLFSSADFCNLHCPA 430 440 450 460 >>CCDS6423.1 SLC52A2 gene_id:79581|Hs108|chr8 (445 aa) initn: 1085 init1: 511 opt: 544 Z-score: 652.2 bits: 129.9 E(32554): 5.2e-30 Smith-Waterman score: 1048; 43.2% identity (65.5% similar) in 472 aa overlap (4-467:11-443) 10 20 30 40 50 pF1KE6 MAFLMHLLVCVFGMGSWVTINGLWVELPLLVMELPEGWYLPSYLTVVIQLANI : :::: .::::::...::.:::::..: :::::: ::::..:.. :.:. CCDS64 MAAPTPARPVLTHLLVALFGMGSWAAVNGIWVELPVVVKELPEGWSLPSYVSVLVALGNL 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE6 GPLLVTLLHHFRPSCLSEVPI-IFTLLG-VGTVTCIIFAFLWNMTSWVLDGHHSIAFLVL : :.::: ... :. .::: . .:: :::. ..: ::. .. : ::.:::.: CCDS64 GLLVVTLWRRLAPGKDEQVPIRVVQVLGMVGTA---LLASLWHHVAPVAGQLHSVAFLAL 70 80 90 100 110 120 130 140 150 160 170 pF1KE6 TFFLALVDCTSSVTFLPFMSRLPTYYLTTFFVGEGLSGLLPALVALAQGSGLTTCVNVTE .: :::. :.:.::::::.:.:: .: .::.:.:::.::: ..::.:: : : CCDS64 AFVLALACCASNVTFLPFLSHLPPRFLRSFFLGQGLSALLPCVLALVQGVGRLEC----- 120 130 140 150 160 170 180 190 200 210 220 230 pF1KE6 ISDSVPSPVPTRETDIAQGVPRALVSALPGMEAPLSHLESRYLPAHFSPLVFFLLLSIMM : :.: ... :: ::. :: :. :: .:: :. .. CCDS64 -----P-PAP--------------INGTPG--PPLDFLE-RF-PAS----TFFWALTALL 180 190 200 240 250 260 270 280 pF1KE6 ACCLVAF--FVLQRQPRCWEASVED-LLNDQVTLHSIRLREENDLGPAGMVDSSQGQGYL . .:: ..: : :: :.. . . . .:: . . . ::. : CCDS64 VASAAAFQGLLLLLPP---PPSVPTGELGSGLQVGAPGAEEEVEESSPLQEPPSQAAGTT 210 220 230 240 250 260 290 300 310 320 330 340 pF1KE6 ---EEKAAPCCPAHLAFVYTLVAFVNALTNGMLPSVQTYSCLSYGPVAYHLAATLSIVAN . :: :. : . :.: .::::::.::.::..::: :: .:::::..:. .:: CCDS64 PGPDPKAYQLLSARSACLLGLLAATNALTNGVLPAVQSFSCLPYGRLAYHLAVVLGSAAN 270 280 290 300 310 320 350 360 370 380 390 400 pF1KE6 PLASLVSMFLPNRSLLFLGVLSVLGTCFGGYNMAMAVMSPCPLLQGHWGGEVLIVASWVL ::: ...: . ::: :: ::.::. ::: ::.::.:::: : : .: ::.: :::: CCDS64 PLACFLAMGVLCRSLAGLGGLSLLGVFCGGYLMALAVLSPCPPLVGTSAGVVLVVLSWVL 330 340 350 360 370 380 410 420 430 440 450 460 pF1KE6 FSGCLSYVKVMLGVVLRDLSRSALLWCGAAVQLGSLLGALLMFPLVNVLRLFSSADFCNL : .::::: . .:. .: ::: :.:.:.::::::. ::: ... ..: : : CCDS64 CLGVFSYVKVAASSLLHGGGRPALLAAGVAIQVGSLLGAVAMFPPTSIYHVFHSRKDCAD 390 400 410 420 430 440 pF1KE6 HCPA : CCDS64 PCDS >>CCDS11066.1 SLC52A1 gene_id:55065|Hs108|chr17 (448 aa) initn: 1060 init1: 505 opt: 530 Z-score: 635.4 bits: 126.8 E(32554): 4.5e-29 Smith-Waterman score: 1025; 41.9% identity (64.4% similar) in 472 aa overlap (4-467:11-446) 10 20 30 40 50 pF1KE6 MAFLMHLLVCVFGMGSWVTINGLWVELPLLVMELPEGWYLPSYLTVVIQLANI : :::: .::::::...::.:::::..: .::::: :::::.::. :.:. CCDS11 MAAPTLGRLVLTHLLVALFGMGSWAAVNGIWVELPVVVKDLPEGWSLPSYLSVVVALGNL 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE6 GPLLVTLLHHFRPSCLSEVPI-IFTLLGVGTVTCIIFAFLWNMTSWVLDGHHSIAFLVLT : :.::: ... :. .::: . .:.: : ..: ::. .. : ::.:::.:. CCDS11 GLLVVTLWRQLAPGKGEQVPIQVVQVLSV--VGTALLAPLWHHVAPVAGQLHSVAFLTLA 70 80 90 100 110 120 130 140 150 160 170 pF1KE6 FFLALVDCTSSVTFLPFMSRLPTYYLTTFFVGEGLSGLLPALVALAQGSGLTTCVNVTEI . ::.. :::.::::::.:.:: .: .::.:.:::.::: ..::.:: : : CCDS11 LVLAMACCTSNVTFLPFLSHLPPPFLRSFFLGQGLSALLPCVLALVQGVGRLEC------ 120 130 140 150 160 170 180 190 200 210 220 230 pF1KE6 SDSVPSPVPTRETDIAQGVPRALVSALPGMEAPLSHLESRYLPAHFSPLVFFLLLSIMMA : :.:: :. : : ::. .: .: .:: :. ... CCDS11 ----P-PAPTNGTS---G-P------------PLD------FPERFPASTFFWALTALLV 180 190 200 240 250 260 270 280 pF1KE6 CCLVAF----FVLQRQPRCWEASVEDLLNDQVTLHSIRLREENDLGPAGMVDSSQGQGYL .:: ..: : .. :. . .::.. : . ::. : . CCDS11 TSAAAFRGLLLLLPSLPSVTTGGSGPELQLGSPGAEEEEKEEEEALPL-QEPPSQAAGTI 210 220 230 240 250 260 290 300 310 320 330 340 pF1KE6 ---EEKAAPCCPAHLAFVYTLVAFVNALTNGMLPSVQTYSCLSYGPVAYHLAATLSIVAN . .: :: ::. :.::..:.:::.:::::..::: :: .:::::..:. .:: CCDS11 PGPDPEAHQLFSAHGAFLLGLMAFTSAVTNGVLPSVQSFSCLPYGRLAYHLAVVLGSAAN 270 280 290 300 310 320 350 360 370 380 390 400 pF1KE6 PLASLVSMFLPNRSLLFLGVLSVLGTCFGGYNMAMAVMSPCPLLQGHWGGEVLIVASWVL ::: ...: . ::: : ::.:: ::.: ::.:..:::: : : .: ::.: :::: CCDS11 PLACFLAMGVLCRSLAGLVGLSLLGMLFGAYLMALAILSPCPPLVGTTAGVVLVVLSWVL 330 340 350 360 370 380 410 420 430 440 450 460 pF1KE6 FSGCLSYVKVMLGVVLRDLSRSALLWCGAAVQLGSLLGALLMFPLVNVLRLFSSADFCNL .::::: . .:. .: ::: :.:.:.:::::: ::: ... ..:.: : CCDS11 CLCVFSYVKVAASSLLHGGGRPALLAAGVAIQVGSLLGAGAMFPPTSIYHVFQSRKDCVD 390 400 410 420 430 440 pF1KE6 HCPA : CCDS11 PCGP 469 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 13:30:33 2016 done: Tue Nov 8 13:30:33 2016 Total Scan time: 2.790 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]